Wall clock time and date at job start Fri Apr 10 2020 14:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00145 * 2 1 4 4 H 1.48498 * 109.47164 * 274.81334 * 3 2 1 5 5 H 1.48495 * 109.47103 * 34.81782 * 3 2 1 6 6 H 1.48497 * 109.46944 * 154.81576 * 3 2 1 7 7 C 1.38816 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00024 * 187.58165 * 7 2 1 9 9 N 1.36940 * 119.99717 * 7.58421 * 7 2 1 10 10 C 1.47674 * 134.45367 * 187.09457 * 9 7 2 11 11 C 1.53444 * 85.97728 * 204.32688 * 10 9 7 12 12 C 1.47669 * 134.45624 * 7.13998 * 9 7 2 13 13 C 1.52486 * 113.60472 * 222.52012 * 11 10 9 14 14 N 1.47341 * 108.26793 * 180.19146 * 13 11 10 15 15 C 1.34779 * 121.05317 * 228.35199 * 14 13 11 16 16 O 1.21280 * 120.00241 * 359.72531 * 15 14 13 17 17 C 1.50695 * 119.99653 * 179.71712 * 15 14 13 18 18 H 1.09000 * 115.60143 * 34.14268 * 17 15 14 19 19 C 1.53255 * 117.53308 * 248.27880 * 17 15 14 20 20 C 1.51801 * 117.53096 * 180.02562 * 17 15 14 21 21 C 1.54489 * 122.10300 * 218.75885 * 20 17 15 22 22 C 1.55160 * 100.84317 * 176.23628 * 21 20 17 23 23 O 1.43750 * 105.30596 * 324.82219 * 22 21 20 24 24 C 1.43545 * 109.96705 * 24.27445 * 23 22 21 25 25 C 1.47121 * 117.88877 * 48.08214 * 14 13 11 26 26 C 1.53223 * 108.72684 * 308.02063 * 25 14 13 27 27 O 1.42493 * 113.80724 * 91.24496 * 11 10 9 28 28 H 0.96998 * 119.99792 * 0.02562 * 1 2 3 29 29 H 1.08996 * 113.79334 * 90.06419 * 10 9 7 30 30 H 1.09001 * 113.89746 * 318.60099 * 10 9 7 31 31 H 1.08997 * 113.79458 * 41.41420 * 12 9 7 32 32 H 1.08996 * 113.79465 * 269.93717 * 12 9 7 33 33 H 1.09004 * 109.69365 * 60.45715 * 13 11 10 34 34 H 1.08999 * 109.58682 * 299.87020 * 13 11 10 35 35 H 1.08994 * 117.53274 * 145.20242 * 19 17 15 36 36 H 1.08997 * 117.57890 * 359.97032 * 19 17 15 37 37 H 1.08997 * 111.04130 * 58.36532 * 21 20 17 38 38 H 1.09000 * 111.23817 * 294.18796 * 21 20 17 39 39 H 1.09000 * 110.27577 * 205.86026 * 22 21 20 40 40 H 1.09003 * 110.35392 * 83.81666 * 22 21 20 41 41 H 1.09004 * 109.89388 * 116.80710 * 24 23 22 42 42 H 1.09004 * 109.89465 * 237.84087 * 24 23 22 43 43 H 1.09001 * 109.59808 * 67.79514 * 25 14 13 44 44 H 1.09002 * 109.59781 * 188.25096 * 25 14 13 45 45 H 1.09005 * 109.49292 * 174.08929 * 26 25 14 46 46 H 1.08995 * 109.49348 * 294.16754 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3960 2.1051 -1.3951 5 1 1.5024 2.6211 0.7994 6 1 3.5950 1.4128 0.5958 7 6 2.0103 -1.2022 -0.0005 8 1 3.0831 -1.2063 0.1229 9 7 1.3345 -2.3828 -0.1576 10 6 1.7112 -3.8085 -0.0784 11 6 0.5091 -4.0656 -0.9968 12 6 -0.0626 -2.7405 -0.4748 13 6 -0.3182 -5.2815 -0.5937 14 7 -1.4305 -5.4208 -1.5498 15 6 -2.6954 -5.6058 -1.1227 16 8 -2.9318 -5.6648 0.0654 17 6 -3.8160 -5.7390 -2.1214 18 1 -3.5581 -6.2396 -3.0547 19 6 -4.8453 -4.6054 -2.1867 20 6 -5.2187 -5.9450 -1.5789 21 6 -6.2293 -6.8973 -2.2560 22 6 -7.4218 -6.8082 -1.2674 23 8 -6.8266 -6.6756 0.0343 24 6 -5.5080 -6.1206 -0.0839 25 6 -1.1176 -5.3456 -2.9854 26 6 -0.3111 -4.0693 -3.2468 27 8 0.8309 -4.0452 -2.3847 28 1 -0.4850 0.8400 -0.0004 29 1 1.6029 -4.2372 0.9179 30 1 2.6726 -4.0374 -0.5381 31 1 -0.5104 -2.1190 -1.2503 32 1 -0.6984 -2.8515 0.4035 33 1 -0.7130 -5.1401 0.4124 34 1 0.3064 -6.1743 -0.6227 35 1 -5.2641 -4.3607 -3.1628 36 1 -4.7126 -3.7635 -1.5072 37 1 -5.8361 -7.9126 -2.3078 38 1 -6.5104 -6.5361 -3.2452 39 1 -8.0226 -7.7163 -1.3174 40 1 -8.0364 -5.9364 -1.4923 41 1 -5.4661 -5.1539 0.4181 42 1 -4.7788 -6.7997 0.3579 43 1 -0.5297 -6.2158 -3.2775 44 1 -2.0432 -5.3173 -3.5604 45 1 0.0174 -4.0531 -4.2861 46 1 -0.9349 -3.1978 -3.0486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053501371.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:43 Heat of formation + Delta-G solvation = -44.456843 kcal Electronic energy + Delta-G solvation = -28569.420087 eV Core-core repulsion = 24654.690611 eV Total energy + Delta-G solvation = -3914.729476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.99991 -41.07160 -39.68041 -37.79516 -36.85317 -35.77100 -34.32525 -31.67655 -31.22925 -29.55862 -28.76117 -27.84624 -26.92623 -25.07228 -24.58235 -23.55514 -23.23925 -21.14408 -20.48017 -19.73875 -18.84179 -18.41464 -17.65298 -17.23226 -17.12565 -16.88273 -16.59315 -16.42493 -15.94421 -15.76317 -15.74522 -15.27133 -14.96219 -14.85352 -14.66758 -14.21620 -14.00444 -13.80616 -13.57814 -13.41767 -13.28257 -13.00616 -12.89118 -12.81061 -12.53133 -12.39448 -12.09356 -12.01402 -11.95659 -11.76040 -11.54420 -11.41174 -11.03505 -10.96600 -10.84686 -10.74069 -10.42906 -9.55442 -8.99378 -7.96728 -5.29888 1.37425 1.41861 1.44643 1.53649 1.76011 2.43137 2.62305 2.63384 2.94956 3.13771 3.23391 3.29915 3.50853 3.59419 3.64820 3.72812 3.81293 3.93798 4.03120 4.13136 4.28951 4.31061 4.41029 4.46409 4.49481 4.60048 4.62073 4.68774 4.72657 4.76649 4.79065 4.82856 4.86088 4.91425 4.93880 4.94865 5.06457 5.07943 5.13418 5.14326 5.30624 5.41526 5.83487 6.02218 6.28928 6.34300 6.84194 7.07534 7.54140 8.48144 9.21313 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018362 B = 0.003271 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.490086 B = 8558.426447 C = 9159.390130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.069 4.069 3 Si 0.983 3.017 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.235 4.235 8 H 0.087 0.913 9 N -0.633 5.633 10 C 0.132 3.868 11 C 0.082 3.918 12 C 0.161 3.839 13 C 0.108 3.892 14 N -0.609 5.609 15 C 0.534 3.466 16 O -0.578 6.578 17 C -0.162 4.162 18 H 0.171 0.829 19 C -0.123 4.123 20 C -0.139 4.139 21 C -0.105 4.105 22 C 0.042 3.958 23 O -0.414 6.414 24 C 0.096 3.904 25 C 0.079 3.921 26 C 0.037 3.963 27 O -0.361 6.361 28 H 0.248 0.752 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.008 0.992 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.149 0.851 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.044 0.956 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.130 0.870 45 H 0.137 0.863 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.923 -17.202 -13.099 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.261 4.261 3 Si 0.810 3.190 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.363 4.363 8 H 0.105 0.895 9 N -0.360 5.360 10 C 0.007 3.993 11 C 0.040 3.960 12 C 0.035 3.965 13 C -0.016 4.016 14 N -0.341 5.341 15 C 0.324 3.676 16 O -0.459 6.459 17 C -0.183 4.183 18 H 0.188 0.812 19 C -0.161 4.161 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.034 4.034 23 O -0.335 6.335 24 C 0.020 3.980 25 C -0.043 4.043 26 C -0.039 4.039 27 O -0.280 6.280 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.026 0.974 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.167 0.833 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.122 0.878 44 H 0.148 0.852 45 H 0.154 0.846 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.885 -16.963 -12.320 23.622 hybrid contribution 0.352 1.598 0.759 1.803 sum -10.534 -15.365 -11.562 21.925 Atomic orbital electron populations 1.70054 1.06722 1.25688 1.58118 1.25717 0.96519 1.01222 1.02685 0.85000 0.77850 0.78713 0.77416 1.21160 1.22163 1.18875 1.19463 0.91350 0.83372 1.42115 0.89524 1.46278 1.06843 1.00695 1.82147 1.22715 0.96582 0.84030 0.95963 1.23037 0.96448 0.93117 0.83444 1.22360 0.87386 0.91662 0.95064 1.21902 0.87850 0.97865 0.93942 1.48201 1.06297 1.71177 1.08438 1.20365 0.83345 0.75028 0.88888 1.90681 1.83410 1.52408 1.19363 1.22195 0.87598 1.07329 1.01157 0.81162 1.23075 0.98346 0.90367 1.04272 1.22121 0.95756 1.00747 0.95321 1.22786 0.92390 0.99131 0.99894 1.23653 0.95816 1.02738 0.81188 1.88467 1.29827 1.84710 1.30465 1.22298 0.83437 0.97733 0.94527 1.22699 1.02858 0.99094 0.79635 1.23216 0.88112 0.96704 0.95902 1.87891 1.31544 1.94408 1.14138 0.94327 0.91671 0.91202 0.95428 0.97419 0.90287 0.88322 0.83302 0.90427 0.88911 0.86308 0.87915 0.91323 0.93731 0.91506 0.87823 0.85222 0.84553 0.94964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.45 11.77 21.65 0.25 -60.20 16 2 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 3 Si 0.98 47.17 29.56 68.60 2.03 49.19 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.23 -13.76 10.69 84.03 0.90 -12.86 16 8 H 0.09 4.82 7.84 -2.91 -0.02 4.80 16 9 N -0.63 -34.30 3.69 -729.28 -2.69 -36.99 16 10 C 0.13 5.53 8.33 86.30 0.72 6.24 16 11 C 0.08 3.14 1.21 -10.62 -0.01 3.12 16 12 C 0.16 8.21 6.43 86.31 0.56 8.77 16 13 C 0.11 3.44 5.75 86.05 0.49 3.94 16 14 N -0.61 -16.33 3.03 -818.63 -2.48 -18.81 16 15 C 0.53 15.18 7.50 87.66 0.66 15.83 16 16 O -0.58 -21.57 13.37 -3.03 -0.04 -21.61 16 17 C -0.16 -2.96 4.88 -11.85 -0.06 -3.02 16 18 H 0.17 1.63 6.87 -2.39 -0.02 1.61 16 19 C -0.12 -2.19 10.03 30.27 0.30 -1.88 16 20 C -0.14 -2.67 2.28 -52.38 -0.12 -2.79 16 21 C -0.10 -1.26 6.98 31.84 0.22 -1.03 16 22 C 0.04 0.67 7.79 72.72 0.57 1.23 16 23 O -0.41 -11.05 11.37 -148.98 -1.69 -12.74 16 24 C 0.10 2.69 6.00 72.08 0.43 3.12 16 25 C 0.08 1.43 6.45 86.34 0.56 1.99 16 26 C 0.04 0.96 6.88 72.06 0.50 1.46 16 27 O -0.36 -12.99 10.52 -148.98 -1.57 -14.55 16 28 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 30 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.03 1.56 6.85 -2.39 -0.02 1.54 16 32 H 0.01 0.45 7.92 -2.39 -0.02 0.43 16 33 H 0.08 2.92 6.89 -2.38 -0.02 2.90 16 34 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.04 1.45 8.12 -2.38 -0.02 1.43 16 42 H 0.07 2.14 6.84 -2.38 -0.02 2.13 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.13 1.39 5.77 -2.39 -0.01 1.37 16 45 H 0.14 2.53 8.14 -2.38 -0.02 2.51 16 46 H 0.03 1.01 7.19 -2.39 -0.02 0.99 16 Total: -1.00 -83.10 363.44 0.97 -82.13 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.98 Total: 13.07 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 6.18 Total: 20.52 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -4.92 Total: -116.00 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -3.30 Total: -48.91 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.19 kcal Total: -83.10 0.97 -82.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053501371.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.675 kcal (2) G-P(sol) polarization free energy of solvation -83.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds