Wall clock time and date at job start Fri Apr 10 2020 14:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99631 * 2 1 4 4 H 1.48497 * 109.47113 * 274.97136 * 3 2 1 5 5 H 1.48501 * 109.47149 * 34.96852 * 3 2 1 6 6 H 1.48498 * 109.47025 * 154.96878 * 3 2 1 7 7 C 1.38810 * 120.00414 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00232 * 185.13648 * 7 2 1 9 9 N 1.36937 * 119.99820 * 5.13949 * 7 2 1 10 10 C 1.47674 * 134.45626 * 173.49055 * 9 7 2 11 11 C 1.53436 * 85.97850 * 155.72066 * 10 9 7 12 12 C 1.47675 * 134.45579 * 353.50994 * 9 7 2 13 13 C 1.52897 * 113.55803 * 137.62486 * 11 10 9 14 14 N 1.47346 * 108.08408 * 180.02562 * 13 11 10 15 15 C 1.34775 * 121.05603 * 131.55173 * 14 13 11 16 16 O 1.21285 * 119.99948 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00023 * 180.02562 * 15 14 13 18 18 H 1.08993 * 115.56712 * 35.41528 * 17 15 14 19 19 C 1.53181 * 117.52182 * 181.19884 * 17 15 14 20 20 C 1.52131 * 117.51889 * 249.56872 * 17 15 14 21 21 C 1.54041 * 121.47818 * 141.71174 * 20 17 15 22 22 C 1.55178 * 101.83304 * 195.70310 * 21 20 17 23 23 O 1.44464 * 103.63182 * 36.32960 * 22 21 20 24 24 C 1.43991 * 107.04608 * 320.42815 * 23 22 21 25 25 C 1.47133 * 117.88778 * 311.56928 * 14 13 11 26 26 C 1.53225 * 108.72998 * 52.22043 * 25 14 13 27 27 O 1.42602 * 113.88656 * 268.72873 * 11 10 9 28 28 H 0.96994 * 119.99990 * 0.02562 * 1 2 3 29 29 H 1.08994 * 113.79339 * 41.45565 * 10 9 7 30 30 H 1.09002 * 113.79033 * 269.98516 * 10 9 7 31 31 H 1.09002 * 113.78847 * 90.00904 * 12 9 7 32 32 H 1.08997 * 113.79389 * 318.53492 * 12 9 7 33 33 H 1.09003 * 109.74891 * 60.35483 * 13 11 10 34 34 H 1.08998 * 109.74879 * 299.67841 * 13 11 10 35 35 H 1.08999 * 117.51999 * 214.84699 * 19 17 15 36 36 H 1.08997 * 117.51816 * 359.93948 * 19 17 15 37 37 H 1.08995 * 110.95176 * 313.84047 * 21 20 17 38 38 H 1.09002 * 110.95187 * 77.56813 * 21 20 17 39 39 H 1.08997 * 110.59534 * 277.79627 * 22 21 20 40 40 H 1.09001 * 110.59308 * 154.86436 * 22 21 20 41 41 H 1.08993 * 109.97533 * 266.93833 * 24 23 22 42 42 H 1.09005 * 109.96717 * 145.66941 * 24 23 22 43 43 H 1.08994 * 109.59018 * 171.99345 * 25 14 13 44 44 H 1.08994 * 109.59277 * 292.29948 * 25 14 13 45 45 H 1.09005 * 109.48803 * 65.84342 * 26 25 14 46 46 H 1.08994 * 109.49292 * 185.91730 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5040 2.6201 0.8024 6 1 3.5962 1.4123 0.5924 7 6 2.0104 -1.2021 0.0005 8 1 3.0871 -1.2039 0.0843 9 7 1.3299 -2.3857 -0.1052 10 6 1.7303 -3.7990 -0.2569 11 6 0.3717 -4.1388 0.3699 12 6 -0.0986 -2.7602 -0.1135 13 6 -0.3442 -5.3024 -0.3167 14 7 -1.6257 -5.5237 0.3760 15 6 -2.7766 -5.6486 -0.3141 16 8 -2.7682 -5.5788 -1.5249 17 6 -4.0739 -5.8739 0.4187 18 1 -4.1671 -5.3643 1.3777 19 6 -5.3434 -6.0359 -0.4230 20 6 -4.7318 -7.2385 0.2800 21 6 -5.4354 -7.9171 1.4705 22 6 -5.5598 -9.3820 0.9739 23 8 -4.3384 -9.5949 0.2323 24 6 -4.0711 -8.3830 -0.4978 25 6 -1.6091 -5.6036 1.8451 26 6 -0.8849 -4.3711 2.3968 27 8 0.4071 -4.2690 1.7896 28 1 -0.4850 0.8400 -0.0004 29 1 2.5826 -4.0832 0.3602 30 1 1.8285 -4.1193 -1.2942 31 1 -0.5444 -2.7715 -1.1081 32 1 -0.6993 -2.2193 0.6176 33 1 0.2691 -6.2012 -0.2530 34 1 -0.5286 -5.0559 -1.3622 35 1 -6.2716 -5.6335 -0.0172 36 1 -5.2400 -5.9785 -1.5066 37 1 -4.8217 -7.8609 2.3695 38 1 -6.4186 -7.4792 1.6433 39 1 -6.4274 -9.4941 0.3237 40 1 -5.6206 -10.0691 1.8178 41 1 -4.4989 -8.4489 -1.4981 42 1 -2.9958 -8.2169 -0.5627 43 1 -2.6317 -5.6257 2.2215 44 1 -1.0855 -6.5076 2.1561 45 1 -1.4652 -3.4766 2.1701 46 1 -0.7726 -4.4682 3.4765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053501373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:50 Heat of formation + Delta-G solvation = -19.627357 kcal Electronic energy + Delta-G solvation = -28598.771382 eV Core-core repulsion = 24685.118593 eV Total energy + Delta-G solvation = -3913.652789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90704 -39.84014 -38.54164 -36.28101 -35.95697 -34.43656 -32.26604 -30.70377 -30.03763 -28.14518 -27.63754 -26.41093 -25.09046 -23.76145 -23.33814 -23.11073 -21.55289 -20.19541 -18.95627 -18.62282 -17.44691 -16.88152 -16.63113 -16.36331 -15.98160 -15.59115 -15.33547 -15.04759 -14.73256 -14.52534 -14.14221 -14.03700 -13.72621 -13.44651 -13.29923 -13.16598 -12.82731 -12.61209 -12.52301 -12.26032 -11.92694 -11.80596 -11.35404 -11.31041 -11.15205 -10.89048 -10.82204 -10.68740 -10.64119 -10.39443 -10.23090 -9.98297 -9.89124 -9.64522 -9.53740 -9.25926 -8.80434 -8.25898 -6.86336 -5.76077 -3.07357 2.40437 2.88062 3.40741 3.45560 3.47695 3.48412 3.61681 3.94276 4.03778 4.28428 4.41965 4.45757 4.55151 4.65789 4.83062 4.90635 4.97530 5.08362 5.11117 5.16271 5.24645 5.28173 5.34652 5.39392 5.41921 5.47270 5.49493 5.56485 5.58220 5.64260 5.72960 5.81030 5.83185 5.96147 6.06723 6.29551 6.44284 6.50111 6.52367 6.56779 7.00910 7.17541 7.41401 7.50935 7.80086 7.98024 8.19377 9.05070 9.71699 10.59011 11.41608 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.025766 B = 0.003049 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.447056 B = 9180.666972 C = 9411.452378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.603 5.603 10 C 0.136 3.864 11 C 0.049 3.951 12 C 0.155 3.845 13 C 0.099 3.901 14 N -0.604 5.604 15 C 0.545 3.455 16 O -0.537 6.537 17 C -0.170 4.170 18 H 0.128 0.872 19 C -0.126 4.126 20 C -0.139 4.139 21 C -0.120 4.120 22 C 0.049 3.951 23 O -0.376 6.376 24 C 0.085 3.915 25 C 0.075 3.925 26 C 0.046 3.954 27 O -0.342 6.342 28 H 0.253 0.747 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.642 -17.710 5.132 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.009 3.991 11 C 0.007 3.993 12 C 0.029 3.971 13 C -0.024 4.024 14 N -0.337 5.337 15 C 0.333 3.667 16 O -0.414 6.414 17 C -0.191 4.191 18 H 0.146 0.854 19 C -0.163 4.163 20 C -0.140 4.140 21 C -0.158 4.158 22 C -0.028 4.028 23 O -0.295 6.295 24 C 0.008 3.992 25 C -0.049 4.049 26 C -0.032 4.032 27 O -0.260 6.260 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.277 -17.506 4.616 21.875 hybrid contribution 0.073 1.325 -0.028 1.328 sum -12.204 -16.181 4.589 20.780 Atomic orbital electron populations 1.69836 1.05088 1.25300 1.56529 1.24809 0.95668 0.97524 1.02397 0.86110 0.78740 0.83531 0.77484 1.21636 1.21757 1.20517 1.19009 0.90775 0.81825 1.43073 0.90059 1.45771 1.01922 1.00545 1.84690 1.22496 0.93367 0.86511 0.96677 1.23747 0.99213 0.94701 0.81644 1.22612 0.88538 0.87759 0.98153 1.22282 0.82959 0.98594 0.98535 1.48056 1.07307 1.71268 1.07036 1.19480 0.83884 0.76157 0.87140 1.90699 1.86228 1.50757 1.13716 1.22268 0.93104 1.01094 1.02646 0.85386 1.23035 0.94988 0.97876 1.00375 1.22210 1.02317 0.89601 0.99864 1.22667 1.00944 0.95413 0.96764 1.23552 0.87941 0.95656 0.95624 1.88948 1.42122 1.35010 1.63424 1.22519 1.00591 0.81726 0.94323 1.22468 1.02274 1.00096 0.80026 1.22882 0.86161 0.96322 0.97794 1.87953 1.26044 1.93510 1.18469 0.93709 0.92602 0.93213 0.94703 0.91078 0.91226 0.87985 0.87432 0.86879 0.89743 0.89640 0.91942 0.88796 0.91333 0.89611 0.89208 0.90566 0.92124 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.86 11.51 55.49 0.64 -27.22 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 22.54 29.56 -169.99 -5.02 17.52 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.31 10.69 -15.06 -0.16 -6.47 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.60 -15.96 3.70 -180.31 -0.67 -16.63 16 10 C 0.14 2.86 8.34 -3.18 -0.03 2.84 16 11 C 0.05 0.95 1.22 -90.30 -0.11 0.84 16 12 C 0.16 3.78 6.56 -3.16 -0.02 3.76 16 13 C 0.10 1.64 5.78 -3.63 -0.02 1.62 16 14 N -0.60 -8.88 3.03 -172.43 -0.52 -9.40 16 15 C 0.55 8.15 6.30 -10.99 -0.07 8.08 16 16 O -0.54 -9.81 15.76 5.55 0.09 -9.72 16 17 C -0.17 -1.86 5.01 -92.12 -0.46 -2.32 16 18 H 0.13 1.16 6.63 -51.93 -0.34 0.82 16 19 C -0.13 -1.21 9.81 -27.08 -0.27 -1.47 16 20 C -0.14 -1.30 2.43 -154.67 -0.38 -1.68 16 21 C -0.12 -0.83 6.94 -25.03 -0.17 -1.00 16 22 C 0.05 0.36 7.73 38.31 0.30 0.66 16 23 O -0.38 -4.21 11.53 -35.23 -0.41 -4.62 16 24 C 0.09 0.94 7.18 37.33 0.27 1.21 16 25 C 0.07 0.88 6.51 -3.58 -0.02 0.86 16 26 C 0.05 0.67 6.88 37.27 0.26 0.93 16 27 O -0.34 -6.53 10.53 -35.23 -0.37 -6.90 16 28 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.04 0.90 7.94 -51.93 -0.41 0.49 16 32 H 0.07 1.92 6.50 -51.93 -0.34 1.58 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.83 6.91 -51.93 -0.36 1.47 16 35 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.11 1.26 7.68 -51.93 -0.40 0.86 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.44 8.13 -51.93 -0.42 0.02 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 1.08 7.25 -51.93 -0.38 0.70 16 43 H 0.09 0.81 5.60 -51.93 -0.29 0.52 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.99 7.19 -51.93 -0.37 0.62 16 46 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -35.09 365.16 -8.83 -43.92 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.09 Total: 0.01 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -0.98 Total: 7.53 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.55 Total: -53.25 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.69 Total: -21.24 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.09 -8.83 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053501373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.291 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds