Wall clock time and date at job start Fri Apr 10 2020 14:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99631 * 2 1 4 4 H 1.48497 * 109.47113 * 274.97136 * 3 2 1 5 5 H 1.48501 * 109.47149 * 34.96852 * 3 2 1 6 6 H 1.48498 * 109.47025 * 154.96878 * 3 2 1 7 7 C 1.38810 * 120.00414 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00232 * 185.13648 * 7 2 1 9 9 N 1.36937 * 119.99820 * 5.13949 * 7 2 1 10 10 C 1.47674 * 134.45626 * 173.49055 * 9 7 2 11 11 C 1.53436 * 85.97850 * 155.72066 * 10 9 7 12 12 C 1.47675 * 134.45579 * 353.50994 * 9 7 2 13 13 C 1.52897 * 113.55803 * 137.62486 * 11 10 9 14 14 N 1.47346 * 108.08408 * 180.02562 * 13 11 10 15 15 C 1.34775 * 121.05603 * 131.55173 * 14 13 11 16 16 O 1.21285 * 119.99948 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00023 * 180.02562 * 15 14 13 18 18 H 1.08993 * 115.56712 * 35.41528 * 17 15 14 19 19 C 1.53181 * 117.52182 * 181.19884 * 17 15 14 20 20 C 1.52131 * 117.51889 * 249.56872 * 17 15 14 21 21 C 1.54041 * 121.47818 * 141.71174 * 20 17 15 22 22 C 1.55178 * 101.83304 * 195.70310 * 21 20 17 23 23 O 1.44464 * 103.63182 * 36.32960 * 22 21 20 24 24 C 1.43991 * 107.04608 * 320.42815 * 23 22 21 25 25 C 1.47133 * 117.88778 * 311.56928 * 14 13 11 26 26 C 1.53225 * 108.72998 * 52.22043 * 25 14 13 27 27 O 1.42602 * 113.88656 * 268.72873 * 11 10 9 28 28 H 0.96994 * 119.99990 * 0.02562 * 1 2 3 29 29 H 1.08994 * 113.79339 * 41.45565 * 10 9 7 30 30 H 1.09002 * 113.79033 * 269.98516 * 10 9 7 31 31 H 1.09002 * 113.78847 * 90.00904 * 12 9 7 32 32 H 1.08997 * 113.79389 * 318.53492 * 12 9 7 33 33 H 1.09003 * 109.74891 * 60.35483 * 13 11 10 34 34 H 1.08998 * 109.74879 * 299.67841 * 13 11 10 35 35 H 1.08999 * 117.51999 * 214.84699 * 19 17 15 36 36 H 1.08997 * 117.51816 * 359.93948 * 19 17 15 37 37 H 1.08995 * 110.95176 * 313.84047 * 21 20 17 38 38 H 1.09002 * 110.95187 * 77.56813 * 21 20 17 39 39 H 1.08997 * 110.59534 * 277.79627 * 22 21 20 40 40 H 1.09001 * 110.59308 * 154.86436 * 22 21 20 41 41 H 1.08993 * 109.97533 * 266.93833 * 24 23 22 42 42 H 1.09005 * 109.96717 * 145.66941 * 24 23 22 43 43 H 1.08994 * 109.59018 * 171.99345 * 25 14 13 44 44 H 1.08994 * 109.59277 * 292.29948 * 25 14 13 45 45 H 1.09005 * 109.48803 * 65.84342 * 26 25 14 46 46 H 1.08994 * 109.49292 * 185.91730 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5040 2.6201 0.8024 6 1 3.5962 1.4123 0.5924 7 6 2.0104 -1.2021 0.0005 8 1 3.0871 -1.2039 0.0843 9 7 1.3299 -2.3857 -0.1052 10 6 1.7303 -3.7990 -0.2569 11 6 0.3717 -4.1388 0.3699 12 6 -0.0986 -2.7602 -0.1135 13 6 -0.3442 -5.3024 -0.3167 14 7 -1.6257 -5.5237 0.3760 15 6 -2.7766 -5.6486 -0.3141 16 8 -2.7682 -5.5788 -1.5249 17 6 -4.0739 -5.8739 0.4187 18 1 -4.1671 -5.3643 1.3777 19 6 -5.3434 -6.0359 -0.4230 20 6 -4.7318 -7.2385 0.2800 21 6 -5.4354 -7.9171 1.4705 22 6 -5.5598 -9.3820 0.9739 23 8 -4.3384 -9.5949 0.2323 24 6 -4.0711 -8.3830 -0.4978 25 6 -1.6091 -5.6036 1.8451 26 6 -0.8849 -4.3711 2.3968 27 8 0.4071 -4.2690 1.7896 28 1 -0.4850 0.8400 -0.0004 29 1 2.5826 -4.0832 0.3602 30 1 1.8285 -4.1193 -1.2942 31 1 -0.5444 -2.7715 -1.1081 32 1 -0.6993 -2.2193 0.6176 33 1 0.2691 -6.2012 -0.2530 34 1 -0.5286 -5.0559 -1.3622 35 1 -6.2716 -5.6335 -0.0172 36 1 -5.2400 -5.9785 -1.5066 37 1 -4.8217 -7.8609 2.3695 38 1 -6.4186 -7.4792 1.6433 39 1 -6.4274 -9.4941 0.3237 40 1 -5.6206 -10.0691 1.8178 41 1 -4.4989 -8.4489 -1.4981 42 1 -2.9958 -8.2169 -0.5627 43 1 -2.6317 -5.6257 2.2215 44 1 -1.0855 -6.5076 2.1561 45 1 -1.4652 -3.4766 2.1701 46 1 -0.7726 -4.4682 3.4765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053501373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:49 Heat of formation + Delta-G solvation = -44.980646 kcal Electronic energy + Delta-G solvation = -28599.870783 eV Core-core repulsion = 24685.118593 eV Total energy + Delta-G solvation = -3914.752190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.99904 -41.03521 -39.71834 -37.80936 -36.84348 -35.77114 -34.31849 -31.65035 -31.22398 -29.49957 -28.66658 -27.97989 -26.90617 -25.05288 -24.59761 -23.73492 -23.14853 -21.06472 -20.43377 -19.71105 -18.84130 -18.49340 -17.72568 -17.32300 -17.17042 -16.92346 -16.68303 -16.25514 -15.97315 -15.78848 -15.70136 -15.23140 -15.01029 -14.89343 -14.61267 -14.24134 -14.01741 -13.77508 -13.52142 -13.38107 -13.30569 -13.03328 -12.88719 -12.78963 -12.52997 -12.42628 -12.11595 -11.98003 -11.96264 -11.75967 -11.53233 -11.39705 -11.06757 -11.00164 -10.83440 -10.73511 -10.66664 -9.57754 -8.97233 -7.95386 -5.29048 1.33827 1.42060 1.45004 1.53857 1.77857 2.43307 2.61384 2.65999 2.91166 3.17100 3.21451 3.32418 3.47241 3.59516 3.65901 3.72254 3.81731 3.92638 4.00045 4.08032 4.26086 4.29260 4.37617 4.45565 4.52295 4.58738 4.59490 4.60453 4.67676 4.72151 4.77903 4.81985 4.85197 4.87909 4.92381 4.97533 5.06820 5.11187 5.11650 5.16765 5.28316 5.42726 5.83848 5.84758 6.26976 6.32542 6.85294 7.04460 7.54859 8.48767 9.22031 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.025766 B = 0.003049 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.447056 B = 9180.666972 C = 9411.452378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.069 4.069 3 Si 0.982 3.018 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.235 4.235 8 H 0.087 0.913 9 N -0.634 5.634 10 C 0.133 3.867 11 C 0.079 3.921 12 C 0.157 3.843 13 C 0.107 3.893 14 N -0.609 5.609 15 C 0.537 3.463 16 O -0.581 6.581 17 C -0.179 4.179 18 H 0.154 0.846 19 C -0.124 4.124 20 C -0.125 4.125 21 C -0.111 4.111 22 C 0.040 3.960 23 O -0.398 6.398 24 C 0.083 3.917 25 C 0.080 3.920 26 C 0.039 3.961 27 O -0.362 6.362 28 H 0.248 0.752 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.009 0.991 32 H 0.037 0.963 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.125 0.875 44 H 0.099 0.901 45 H 0.034 0.966 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.455 -19.234 7.283 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.363 4.363 8 H 0.105 0.895 9 N -0.361 5.361 10 C 0.008 3.992 11 C 0.037 3.963 12 C 0.031 3.969 13 C -0.016 4.016 14 N -0.341 5.341 15 C 0.327 3.673 16 O -0.462 6.462 17 C -0.200 4.200 18 H 0.172 0.828 19 C -0.161 4.161 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.035 4.035 23 O -0.318 6.318 24 C 0.006 3.994 25 C -0.041 4.041 26 C -0.038 4.038 27 O -0.281 6.281 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.027 0.973 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.157 0.843 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.143 0.857 44 H 0.117 0.883 45 H 0.052 0.948 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.079 -19.073 6.798 24.106 hybrid contribution 0.321 1.735 -0.695 1.896 sum -12.758 -17.338 6.103 22.375 Atomic orbital electron populations 1.70042 1.06659 1.25626 1.58033 1.25709 0.96587 1.01080 1.02749 0.85012 0.77950 0.78831 0.77274 1.21481 1.21954 1.18867 1.19446 0.91370 0.83200 1.42249 0.89520 1.46161 1.03014 1.01960 1.84939 1.22718 0.94763 0.83614 0.98077 1.23200 0.97586 0.92996 0.82490 1.22431 0.87469 0.90987 0.96054 1.22012 0.84293 0.98125 0.97207 1.48206 1.06597 1.70909 1.08407 1.20256 0.85106 0.74994 0.86922 1.90674 1.86957 1.52675 1.15863 1.22310 0.91199 1.02971 1.03487 0.82812 1.23135 0.95549 0.98179 0.99261 1.22213 1.01356 0.88450 1.00539 1.22730 1.02125 0.94328 0.95647 1.23843 0.86812 0.96765 0.96120 1.88927 1.43965 1.35031 1.63867 1.22416 0.99446 0.82864 0.94637 1.22647 1.04340 0.99288 0.77869 1.23198 0.84285 0.96694 0.99592 1.87907 1.28904 1.93525 1.17734 0.94319 0.91429 0.91312 0.97327 0.94479 0.88558 0.90025 0.84344 0.89143 0.88557 0.87070 0.91083 0.86857 0.92038 0.91792 0.85669 0.88321 0.94751 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.02 11.51 21.65 0.25 -59.77 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.98 47.18 29.56 68.60 2.03 49.21 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.23 -13.77 10.69 84.03 0.90 -12.87 16 8 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 9 N -0.63 -34.50 3.70 -729.26 -2.70 -37.20 16 10 C 0.13 5.63 8.34 86.30 0.72 6.35 16 11 C 0.08 3.12 1.22 -10.49 -0.01 3.11 16 12 C 0.16 8.02 6.56 86.31 0.57 8.59 16 13 C 0.11 3.54 5.78 86.18 0.50 4.03 16 14 N -0.61 -17.40 3.03 -817.82 -2.48 -19.88 16 15 C 0.54 15.96 6.30 87.66 0.55 16.51 16 16 O -0.58 -22.12 15.76 -3.05 -0.05 -22.17 16 17 C -0.18 -3.54 5.01 -11.77 -0.06 -3.60 16 18 H 0.15 2.21 6.63 -2.39 -0.02 2.19 16 19 C -0.12 -2.17 9.81 30.37 0.30 -1.87 16 20 C -0.12 -2.05 2.43 -52.29 -0.13 -2.17 16 21 C -0.11 -1.07 6.94 31.69 0.22 -0.85 16 22 C 0.04 0.48 7.73 72.73 0.56 1.04 16 23 O -0.40 -8.31 11.53 -148.98 -1.72 -10.02 16 24 C 0.08 1.79 7.18 72.09 0.52 2.30 16 25 C 0.08 1.67 6.51 86.33 0.56 2.23 16 26 C 0.04 1.08 6.88 72.06 0.50 1.57 16 27 O -0.36 -13.56 10.53 -148.98 -1.57 -15.12 16 28 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.07 2.66 8.09 -2.39 -0.02 2.64 16 31 H 0.01 0.50 7.94 -2.39 -0.02 0.48 16 32 H 0.04 2.12 6.50 -2.39 -0.02 2.11 16 33 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.08 3.04 6.91 -2.39 -0.02 3.03 16 35 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 2.02 7.68 -2.39 -0.02 2.01 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.11 0.56 8.13 -2.39 -0.02 0.54 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.63 7.25 -2.38 -0.02 1.61 16 43 H 0.13 1.73 5.60 -2.39 -0.01 1.71 16 44 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.03 1.13 7.19 -2.38 -0.02 1.11 16 46 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -81.07 365.16 0.91 -80.17 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.98 Total: 14.00 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 6.16 Total: 20.78 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -4.92 Total: -116.84 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -3.33 Total: -47.32 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -81.07 0.91 -80.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053501373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.187 kcal (2) G-P(sol) polarization free energy of solvation -81.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds