Wall clock time and date at job start Fri Apr 10 2020 14:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.54461 * 112.29651 * 2 1 4 4 N 1.48326 * 104.32542 * 96.98512 * 3 2 1 5 5 C 1.36936 * 128.20167 * 221.77272 * 4 3 2 6 6 H 1.07998 * 119.99716 * 164.12082 * 5 4 3 7 7 C 1.38804 * 119.99727 * 344.12245 * 5 4 3 8 8 N 1.31622 * 120.00247 * 350.53652 * 7 5 4 9 9 Si 1.86810 * 119.99877 * 170.53606 * 7 5 4 10 10 H 1.48493 * 109.47005 * 90.00021 * 9 7 5 11 11 H 1.48501 * 109.47040 * 209.99959 * 9 7 5 12 12 H 1.48500 * 109.46752 * 329.99813 * 9 7 5 13 13 C 1.48339 * 103.59738 * 42.03565 * 4 3 2 14 14 C 1.54817 * 104.14457 * 317.93152 * 13 4 3 15 15 H 1.08994 * 112.89383 * 262.94939 * 14 13 4 16 16 C 1.53743 * 108.88206 * 137.54206 * 14 13 4 17 17 N 1.47203 * 106.42742 * 229.55656 * 16 14 13 18 18 C 1.34776 * 126.69913 * 211.37064 * 17 16 14 19 19 O 1.21282 * 119.99772 * 180.02562 * 18 17 16 20 20 C 1.50696 * 120.00271 * 0.02597 * 18 17 16 21 21 C 1.53001 * 109.47043 * 179.97438 * 20 18 17 22 22 H 1.08995 * 110.76946 * 308.51896 * 21 20 18 23 23 C 1.54578 * 110.86646 * 72.27289 * 21 20 18 24 24 O 1.45834 * 104.44116 * 145.01533 * 23 21 20 25 25 C 1.34067 * 109.90917 * 329.39146 * 24 23 21 26 26 O 1.20826 * 125.09846 * 200.83935 * 25 24 23 27 27 C 1.51330 * 109.80918 * 20.83312 * 25 24 23 28 28 C 1.48243 * 106.87931 * 31.10916 * 17 16 14 29 29 H 1.08992 * 109.47661 * 61.01320 * 1 2 3 30 30 H 1.09004 * 109.46889 * 181.02015 * 1 2 3 31 31 H 1.09003 * 109.46893 * 301.01017 * 1 2 3 32 32 H 1.09000 * 110.45811 * 338.27372 * 3 2 1 33 33 H 1.09000 * 110.45841 * 215.70252 * 3 2 1 34 34 H 0.97001 * 120.00021 * 180.02562 * 8 7 5 35 35 H 1.08995 * 110.46708 * 76.68195 * 13 4 3 36 36 H 1.09010 * 110.46100 * 199.25456 * 13 4 3 37 37 H 1.09002 * 110.06459 * 348.78983 * 16 14 13 38 38 H 1.08996 * 110.07135 * 110.25727 * 16 14 13 39 39 H 1.09007 * 109.46698 * 299.99304 * 20 18 17 40 40 H 1.08997 * 109.47631 * 59.99785 * 20 18 17 41 41 H 1.09003 * 110.43375 * 263.74997 * 23 21 20 42 42 H 1.08992 * 110.44343 * 26.27328 * 23 21 20 43 43 H 1.09005 * 110.36910 * 238.85185 * 27 25 24 44 44 H 1.08998 * 110.45940 * 116.57056 * 27 25 24 45 45 H 1.09004 * 110.56242 * 209.96654 * 28 17 16 46 46 H 1.08999 * 110.07507 * 88.11817 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1160 1.4291 0.0000 4 7 2.4170 1.7024 1.4265 5 6 2.2031 2.8570 2.1310 6 1 2.2284 2.8433 3.2106 7 6 1.9538 4.0448 1.4575 8 7 2.1055 4.1052 0.1515 9 14 1.4028 5.5577 2.4048 10 1 2.5936 6.3371 2.8286 11 1 0.5434 6.4005 1.5351 12 1 0.6335 5.1380 3.6036 13 6 3.0105 0.4308 1.9075 14 6 2.1222 -0.6659 1.2711 15 1 1.3494 -1.0310 1.9475 16 6 3.0241 -1.7973 0.7515 17 7 2.6008 -2.0648 -0.6327 18 6 2.6418 -3.2502 -1.2727 19 8 2.2601 -3.3329 -2.4210 20 6 3.1620 -4.4728 -0.5618 21 6 3.1007 -5.6760 -1.5049 22 1 2.1070 -5.7742 -1.9421 23 6 4.1826 -5.5699 -2.6038 24 8 4.5999 -6.9475 -2.8376 25 6 4.4788 -7.6592 -1.7079 26 8 5.0570 -8.6938 -1.4732 27 6 3.5094 -6.9723 -0.7706 28 6 2.1130 -0.7804 -1.1895 29 1 -0.3634 0.4980 -0.8988 30 1 -0.3633 -1.0275 0.0183 31 1 -0.3633 0.5295 0.8808 32 1 1.3828 2.1416 -0.3780 33 1 3.0279 1.4670 -0.5960 34 1 1.9316 4.9354 -0.3191 35 1 4.0405 0.3369 1.5636 36 1 2.9646 0.3763 2.9952 37 1 4.0674 -1.4819 0.7691 38 1 2.8935 -2.6904 1.3626 39 1 4.1942 -4.3032 -0.2553 40 1 2.5494 -4.6698 0.3180 41 1 3.7611 -5.1404 -3.5127 42 1 5.0236 -4.9716 -2.2535 43 1 3.9987 -6.7350 0.1741 44 1 2.6363 -7.6015 -0.5973 45 1 1.3392 -0.9563 -1.9367 46 1 2.9408 -0.2257 -1.6311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091597907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:46 Heat of formation + Delta-G solvation = -107.368781 kcal Electronic energy + Delta-G solvation = -27824.592072 eV Core-core repulsion = 23907.134529 eV Total energy + Delta-G solvation = -3917.457542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09345 -41.37850 -39.74037 -38.54772 -36.49681 -35.23699 -34.22457 -32.92673 -31.12312 -30.09358 -28.54333 -27.94642 -26.76576 -26.52603 -24.01842 -22.36809 -22.27189 -22.14727 -20.23347 -19.75076 -18.77403 -18.32434 -17.73538 -17.68312 -17.26511 -16.88549 -16.60778 -16.29493 -15.88909 -15.50379 -15.26198 -15.08651 -14.70948 -14.64440 -14.46018 -14.13039 -13.72692 -13.57458 -13.45262 -13.25583 -13.02834 -12.95979 -12.89867 -12.69534 -12.44134 -12.34475 -12.26131 -12.17754 -11.87676 -11.70520 -11.53890 -11.47979 -11.46482 -11.29955 -11.23238 -10.73642 -10.69115 -9.64265 -8.83044 -7.87291 -5.22418 1.00375 1.48033 1.48960 1.57730 1.68876 1.99726 2.29916 2.51094 2.99183 3.21795 3.32970 3.47520 3.57218 3.62624 3.74293 3.93515 4.01371 4.08273 4.25922 4.29585 4.34684 4.44115 4.47418 4.56271 4.56648 4.67492 4.68694 4.76547 4.82227 4.87807 4.91618 4.97546 5.02459 5.07178 5.13888 5.25193 5.25993 5.32485 5.50688 5.51356 5.58755 5.76399 5.76648 6.23718 6.38988 6.66997 7.05088 7.19199 7.73963 8.53192 9.25681 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.036260 B = 0.002428 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.016736 B =11530.403942 C =11768.494532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.088 4.088 3 C 0.173 3.827 4 N -0.620 5.620 5 C -0.230 4.230 6 H 0.082 0.918 7 C -0.063 4.063 8 N -0.947 5.947 9 Si 0.971 3.029 10 H -0.287 1.287 11 H -0.298 1.298 12 H -0.268 1.268 13 C 0.127 3.873 14 C -0.097 4.097 15 H 0.102 0.898 16 C 0.112 3.888 17 N -0.614 5.614 18 C 0.522 3.478 19 O -0.585 6.585 20 C -0.120 4.120 21 C -0.098 4.098 22 H 0.103 0.897 23 C 0.056 3.944 24 O -0.372 6.372 25 C 0.479 3.521 26 O -0.508 6.508 27 C -0.165 4.165 28 C 0.124 3.876 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.050 0.950 33 H -0.002 1.002 34 H 0.247 0.753 35 H 0.031 0.969 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.145 0.855 44 H 0.137 0.863 45 H 0.069 0.931 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 -19.267 2.265 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 C 0.047 3.953 4 N -0.343 5.343 5 C -0.359 4.359 6 H 0.099 0.901 7 C -0.257 4.257 8 N -0.595 5.595 9 Si 0.800 3.200 10 H -0.214 1.214 11 H -0.225 1.225 12 H -0.193 1.193 13 C 0.001 3.999 14 C -0.118 4.118 15 H 0.121 0.879 16 C -0.011 4.011 17 N -0.346 5.346 18 C 0.313 3.687 19 O -0.465 6.465 20 C -0.159 4.159 21 C -0.118 4.118 22 H 0.121 0.879 23 C -0.017 4.017 24 O -0.289 6.289 25 C 0.322 3.678 26 O -0.395 6.395 27 C -0.203 4.203 28 C 0.001 3.999 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.016 0.984 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.157 0.843 41 H 0.127 0.873 42 H 0.117 0.883 43 H 0.163 0.837 44 H 0.155 0.845 45 H 0.087 0.913 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.575 -19.682 1.530 19.750 hybrid contribution -0.190 1.753 -0.201 1.775 sum 0.385 -17.928 1.329 17.982 Atomic orbital electron populations 1.21473 0.93007 1.01196 1.01059 1.22328 0.96153 0.96013 0.94521 1.21554 0.95945 0.92154 0.85653 1.45360 1.70524 1.10279 1.08146 1.19328 1.40763 0.85247 0.90550 0.90071 1.25645 1.03121 1.00162 0.96749 1.70075 1.55209 1.26308 1.07926 0.85190 0.77621 0.79462 0.77715 1.21440 1.22452 1.19266 1.22155 0.94340 0.85373 0.97986 1.23065 0.97897 0.94734 0.96098 0.87941 1.22359 0.98203 0.99405 0.81103 1.48974 1.62655 1.07817 1.15199 1.21009 0.77615 0.83831 0.86229 1.90703 1.50784 1.85557 1.19496 1.21783 1.05852 0.88709 0.99574 1.22208 1.00878 0.93623 0.95041 0.87854 1.24469 0.97993 0.77285 1.01953 1.87016 1.80231 1.25342 1.36304 1.23834 0.79636 0.82937 0.81373 1.90693 1.49162 1.24175 1.75512 1.22970 1.00621 0.96534 1.00154 1.22097 0.98180 0.83837 0.95776 0.93665 0.91387 0.93625 0.93139 0.98383 0.94418 0.95102 0.92215 0.90438 0.86158 0.85551 0.84269 0.87286 0.88327 0.83697 0.84508 0.91297 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.38 8.57 71.98 0.62 -2.77 16 2 C -0.09 -2.81 1.07 -50.67 -0.05 -2.87 16 3 C 0.17 7.74 5.10 86.52 0.44 8.18 16 4 N -0.62 -28.91 3.37 -686.20 -2.31 -31.23 16 5 C -0.23 -12.03 10.37 84.03 0.87 -11.16 16 6 H 0.08 4.05 7.85 -2.91 -0.02 4.02 16 7 C -0.06 -3.44 5.40 84.86 0.46 -2.98 16 8 N -0.95 -55.10 10.89 21.65 0.24 -54.86 16 9 Si 0.97 43.93 29.56 68.60 2.03 45.96 16 10 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 C 0.13 4.30 6.77 86.65 0.59 4.89 16 14 C -0.10 -2.52 3.76 -9.16 -0.03 -2.55 16 15 H 0.10 2.37 7.93 -2.39 -0.02 2.35 16 16 C 0.11 1.94 6.39 86.50 0.55 2.49 16 17 N -0.61 -13.27 3.34 -812.66 -2.71 -15.99 16 18 C 0.52 10.10 7.72 87.66 0.68 10.78 16 19 O -0.58 -15.99 15.38 -3.04 -0.05 -16.04 16 20 C -0.12 -0.95 3.99 29.85 0.12 -0.84 16 21 C -0.10 -0.97 2.74 -9.75 -0.03 -1.00 16 22 H 0.10 1.23 7.87 -2.39 -0.02 1.21 16 23 C 0.06 0.81 6.78 72.52 0.49 1.30 16 24 O -0.37 -7.56 11.05 -50.18 -0.55 -8.11 16 25 C 0.48 8.98 8.58 71.44 0.61 9.59 16 26 O -0.51 -13.67 18.00 21.64 0.39 -13.28 16 27 C -0.17 -1.28 6.52 30.56 0.20 -1.08 16 28 C 0.12 3.64 6.28 86.29 0.54 4.18 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 2.65 6.24 -2.39 -0.01 2.64 16 33 H 0.00 -0.08 7.18 -2.39 -0.02 -0.10 16 34 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 35 H 0.03 1.04 7.17 -2.39 -0.02 1.02 16 36 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.08 1.35 7.10 -2.39 -0.02 1.33 16 38 H 0.12 1.01 7.31 -2.39 -0.02 1.00 16 39 H 0.13 0.46 7.93 -2.38 -0.02 0.44 16 40 H 0.14 0.30 7.86 -2.39 -0.02 0.28 16 41 H 0.11 1.84 7.82 -2.39 -0.02 1.83 16 42 H 0.10 1.13 7.77 -2.39 -0.02 1.11 16 43 H 0.15 0.36 7.80 -2.38 -0.02 0.34 16 44 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 2.11 7.64 -2.38 -0.02 2.09 16 46 H 0.05 1.78 7.11 -2.39 -0.02 1.76 16 Total: -1.00 -75.57 364.55 4.06 -71.51 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 0.98 Total: 5.87 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.05 Total: 16.17 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -4.79 Total: -102.07 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.21 Total: -37.43 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -75.57 4.06 -71.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091597907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.861 kcal (2) G-P(sol) polarization free energy of solvation -75.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds