Wall clock time and date at job start Fri Apr 10 2020 14:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00365 * 2 1 4 4 H 1.48503 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47263 * 300.00258 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00232 * 3 2 1 7 7 C 1.38814 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00298 * 157.22052 * 7 2 1 9 9 N 1.36938 * 119.99643 * 337.21388 * 7 2 1 10 10 C 1.46495 * 120.00526 * 326.30341 * 9 7 2 11 11 C 1.52998 * 109.47161 * 264.41481 * 10 9 7 12 12 O 1.42907 * 109.47476 * 64.99874 * 11 10 9 13 13 C 1.46504 * 119.99550 * 146.30719 * 9 7 2 14 14 C 1.53042 * 109.45891 * 299.99408 * 13 9 7 15 15 C 1.53188 * 109.31390 * 181.38593 * 14 13 9 16 16 N 1.46927 * 108.78102 * 305.37072 * 15 14 13 17 17 C 1.34769 * 120.63146 * 233.58955 * 16 15 14 18 18 O 1.21282 * 120.00385 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99966 * 180.27194 * 17 16 15 20 20 C 1.50702 * 109.47354 * 179.71874 * 19 17 16 21 21 C 1.41382 * 126.58108 * 269.71326 * 20 19 17 22 22 C 1.34514 * 106.84110 * 179.83022 * 21 20 19 23 23 O 1.34312 * 108.42040 * 0.43410 * 22 21 20 24 24 C 1.34307 * 109.47152 * 359.71962 * 23 22 21 25 25 C 1.46928 * 118.73652 * 53.85549 * 16 15 14 26 26 C 1.53037 * 109.46401 * 60.06826 * 13 9 7 27 27 H 0.97002 * 119.99843 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46880 * 24.41210 * 10 9 7 29 29 H 1.08995 * 109.47549 * 144.41013 * 10 9 7 30 30 H 1.09005 * 109.47047 * 184.99425 * 11 10 9 31 31 H 1.08995 * 109.47202 * 304.99639 * 11 10 9 32 32 H 0.96696 * 113.99960 * 179.97438 * 12 11 10 33 33 H 1.09002 * 109.45736 * 180.02562 * 13 9 7 34 34 H 1.09001 * 109.49327 * 61.43719 * 14 13 9 35 35 H 1.08998 * 109.52863 * 301.36192 * 14 13 9 36 36 H 1.09000 * 109.58900 * 185.57709 * 15 14 13 37 37 H 1.09005 * 109.69886 * 65.22786 * 15 14 13 38 38 H 1.08994 * 109.47454 * 299.71956 * 19 17 16 39 39 H 1.09005 * 109.47150 * 59.72101 * 19 17 16 40 40 H 1.07999 * 126.57916 * 0.02562 * 21 20 19 41 41 H 1.07994 * 125.78900 * 180.11387 * 22 21 20 42 42 H 1.07995 * 125.78479 * 180.02562 * 24 23 22 43 43 H 1.08996 * 109.58491 * 65.92656 * 25 16 15 44 44 H 1.08992 * 109.58733 * 186.35795 * 25 16 15 45 45 H 1.09003 * 109.49710 * 298.56352 * 26 13 9 46 46 H 1.08992 * 109.49996 * 58.66428 * 26 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0270 -1.2386 -0.3627 9 7 1.4055 -2.3420 0.4583 10 6 0.4398 -2.2674 1.5573 11 6 1.1489 -2.5635 2.8803 12 8 2.1062 -1.5368 3.1480 13 6 1.7246 -3.6360 -0.1500 14 6 1.3683 -3.6016 -1.6380 15 6 1.6709 -4.9671 -2.2631 16 7 3.0713 -5.3145 -1.9857 17 6 3.9072 -5.6494 -2.9883 18 8 3.5056 -5.6665 -4.1326 19 6 5.3392 -6.0092 -2.6870 20 6 6.0530 -6.3477 -3.9704 21 6 6.1579 -7.6265 -4.5642 22 6 6.8720 -7.4742 -5.6939 23 8 7.2114 -6.1799 -5.8102 24 6 6.7174 -5.4921 -4.7678 25 6 3.5414 -5.2955 -0.5938 26 6 3.2194 -3.9210 0.0121 27 1 -0.4850 0.8401 0.0004 28 1 0.0065 -1.2678 1.5930 29 1 -0.3508 -3.0004 1.3967 30 1 0.4156 -2.5956 3.6863 31 1 1.6570 -3.5254 2.8128 32 1 2.5943 -1.6598 3.9735 33 1 1.1501 -4.4204 0.3429 34 1 1.9607 -2.8342 -2.1362 35 1 0.3084 -3.3752 -1.7537 36 1 1.5128 -4.9188 -3.3405 37 1 1.0145 -5.7225 -1.8310 38 1 5.8334 -5.1636 -2.2086 39 1 5.3647 -6.8703 -2.0191 40 1 5.7416 -8.5481 -4.1852 41 1 7.1329 -8.2603 -6.3869 42 1 6.8335 -4.4318 -4.5987 43 1 3.0344 -6.0758 -0.0262 44 1 4.6180 -5.4640 -0.5694 45 1 3.7944 -3.1505 -0.5017 46 1 3.4768 -3.9222 1.0711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098352870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:04 Heat of formation + Delta-G solvation = -40.836535 kcal Electronic energy + Delta-G solvation = -28052.309174 eV Core-core repulsion = 24137.736686 eV Total energy + Delta-G solvation = -3914.572488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.58399 -39.86817 -37.57199 -36.14953 -34.60438 -34.05600 -32.07180 -31.05429 -30.29575 -30.10542 -28.06677 -27.39397 -24.76813 -23.27908 -22.71313 -21.65667 -21.14886 -20.43523 -19.76404 -18.73191 -17.43129 -17.15208 -16.60166 -16.18798 -15.86532 -15.45057 -15.26057 -14.87006 -14.65768 -14.40208 -13.73853 -13.69229 -13.61364 -13.26839 -13.00933 -12.86270 -12.69960 -12.56038 -12.44294 -12.05589 -11.93057 -11.59699 -11.41019 -11.17188 -10.93430 -10.76599 -10.64090 -10.46817 -10.10193 -9.92811 -9.86674 -9.83768 -9.47021 -9.41965 -9.10203 -8.56453 -8.36335 -8.33529 -6.55298 -5.70738 -3.20388 1.73781 2.48913 2.83352 3.09815 3.34185 3.44956 3.52882 3.55361 4.56648 4.66808 4.71552 4.78825 4.95280 5.12497 5.16354 5.26610 5.32030 5.40721 5.45901 5.50552 5.56552 5.59944 5.72213 5.85917 5.94085 5.97575 6.02177 6.08172 6.10002 6.15465 6.26971 6.38273 6.41716 6.48921 6.61369 6.71091 6.80793 6.84623 7.05988 7.12412 7.21732 7.65598 7.70534 7.90139 8.40274 8.44200 8.62612 9.25899 9.91614 10.44055 11.32433 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016951 B = 0.003174 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.433834 B = 8820.089823 C = 9420.394082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.012 3.988 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.058 0.942 9 N -0.572 5.572 10 C 0.140 3.860 11 C 0.060 3.940 12 O -0.544 6.544 13 C 0.177 3.823 14 C -0.133 4.133 15 C 0.112 3.888 16 N -0.606 5.606 17 C 0.514 3.486 18 O -0.541 6.541 19 C -0.070 4.070 20 C -0.161 4.161 21 C -0.199 4.199 22 C -0.048 4.048 23 O -0.178 6.178 24 C -0.027 4.027 25 C 0.107 3.893 26 C -0.140 4.140 27 H 0.251 0.749 28 H 0.108 0.892 29 H 0.035 0.965 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.349 0.651 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.144 0.856 41 H 0.200 0.800 42 H 0.200 0.800 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.877 -15.143 -0.821 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.186 4.186 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.075 0.925 9 N -0.291 5.291 10 C 0.014 3.986 11 C -0.020 4.020 12 O -0.345 6.345 13 C 0.069 3.931 14 C -0.173 4.173 15 C -0.010 4.010 16 N -0.339 5.339 17 C 0.301 3.699 18 O -0.419 6.419 19 C -0.110 4.110 20 C -0.162 4.162 21 C -0.218 4.218 22 C -0.115 4.115 23 O -0.074 6.074 24 C -0.094 4.094 25 C -0.016 4.016 26 C -0.180 4.180 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.191 0.809 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.162 0.838 41 H 0.216 0.784 42 H 0.217 0.783 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.455 -14.645 -2.253 17.577 hybrid contribution 0.414 0.537 0.983 1.194 sum 9.870 -14.109 -1.270 17.265 Atomic orbital electron populations 1.69978 1.05521 1.25315 1.52997 1.24932 0.94871 0.98419 1.00417 0.86335 0.79724 0.84388 0.76841 1.20411 1.22277 1.21661 1.18803 0.94261 0.85611 1.37447 0.92485 1.43767 1.49118 1.01671 1.34498 1.21063 0.90066 1.04048 0.83446 1.23094 0.90412 0.89247 0.99284 1.86859 1.55286 1.49165 1.43191 1.20301 0.92212 0.89023 0.91564 1.22302 1.02318 0.94612 0.98087 1.21725 0.80244 0.97293 1.01762 1.48164 1.11524 1.67289 1.06970 1.20486 0.87438 0.76993 0.84953 1.90683 1.77510 1.52970 1.20711 1.20032 0.92373 1.03476 0.95158 1.19829 1.03496 0.93738 0.99181 1.21648 1.04272 0.98509 0.97364 1.23911 1.03124 0.84104 1.00397 1.84057 1.61416 1.19749 1.42130 1.23826 1.00495 0.97859 0.87260 1.21940 0.99248 0.99066 0.81346 1.22443 1.00581 0.94615 1.00360 0.93908 0.87474 0.94700 0.96313 0.96082 0.80856 0.93578 0.91112 0.91061 0.89834 0.92357 0.88040 0.88205 0.83770 0.78363 0.78284 0.91786 0.90539 0.91227 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 11.36 55.49 0.63 -24.86 16 2 C 0.01 0.34 4.90 -17.43 -0.09 0.25 16 3 Si 0.90 22.25 29.61 -169.99 -5.03 17.22 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.23 -6.07 8.06 -15.06 -0.12 -6.19 16 8 H 0.06 1.53 6.87 -52.49 -0.36 1.17 16 9 N -0.57 -13.16 2.35 -165.61 -0.39 -13.55 16 10 C 0.14 3.15 5.57 -4.05 -0.02 3.13 16 11 C 0.06 1.13 7.39 37.16 0.27 1.40 16 12 O -0.54 -10.98 13.40 -35.23 -0.47 -11.45 16 13 C 0.18 3.33 2.59 -67.89 -0.18 3.15 16 14 C -0.13 -2.53 5.31 -26.61 -0.14 -2.67 16 15 C 0.11 1.80 6.43 -3.71 -0.02 1.78 16 16 N -0.61 -8.90 2.97 -172.51 -0.51 -9.42 16 17 C 0.51 7.82 7.69 -10.99 -0.08 7.73 16 18 O -0.54 -10.33 15.45 5.56 0.09 -10.25 16 19 C -0.07 -0.80 4.56 -29.03 -0.13 -0.93 16 20 C -0.16 -1.99 4.66 -104.74 -0.49 -2.48 16 21 C -0.20 -2.25 10.87 -39.70 -0.43 -2.69 16 22 C -0.05 -0.50 12.09 29.42 0.36 -0.14 16 23 O -0.18 -2.16 10.65 5.68 0.06 -2.10 16 24 C -0.03 -0.32 12.01 29.41 0.35 0.03 16 25 C 0.11 1.34 6.37 -3.48 -0.02 1.31 16 26 C -0.14 -2.26 5.32 -26.39 -0.14 -2.40 16 27 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.11 2.84 5.35 -51.92 -0.28 2.56 16 29 H 0.03 0.73 8.04 -51.93 -0.42 0.31 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.35 5.05 9.12 45.56 0.42 5.46 16 33 H 0.05 0.81 7.87 -51.93 -0.41 0.41 16 34 H 0.07 1.55 7.71 -51.93 -0.40 1.15 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.45 7.01 -51.93 -0.36 1.08 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.99 7.70 -51.93 -0.40 0.59 16 39 H 0.10 0.91 7.93 -51.93 -0.41 0.49 16 40 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.20 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.75 5.94 -51.93 -0.31 0.45 16 45 H 0.07 1.28 7.03 -51.93 -0.37 0.92 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -33.93 372.82 -7.14 -41.07 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.24 Total: 6.42 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.89 Total: 1.29 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.27 Total: -47.83 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.33 Total: -23.80 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.93 -7.14 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098352870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.233 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds