Wall clock time and date at job start Fri Apr 10 2020 14:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00092 * 2 1 4 4 H 1.48495 * 109.46873 * 239.99580 * 3 2 1 5 5 H 1.48496 * 109.47258 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46865 * 119.99727 * 3 2 1 7 7 C 1.38816 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99806 * 195.49300 * 7 2 1 9 9 N 1.36933 * 120.00011 * 15.50016 * 7 2 1 10 10 C 1.44456 * 118.51103 * 206.10791 * 9 7 2 11 11 C 1.54880 * 109.32854 * 268.95360 * 10 9 7 12 12 C 1.47690 * 109.67855 * 290.10821 * 11 10 9 13 13 O 1.42561 * 113.66796 * 60.80184 * 12 11 10 14 14 C 1.40525 * 113.53971 * 272.23609 * 13 12 11 15 15 H 1.09005 * 109.40433 * 335.17065 * 14 13 12 16 16 C 1.52996 * 109.40651 * 215.41027 * 14 13 12 17 17 N 1.46504 * 109.47086 * 65.00228 * 16 14 13 18 18 C 1.34781 * 119.99542 * 179.97438 * 17 16 14 19 19 O 1.21273 * 120.00109 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.99295 * 179.97438 * 18 17 16 21 21 C 1.53004 * 109.46639 * 180.02562 * 20 18 17 22 22 C 1.50707 * 109.46718 * 180.02562 * 21 20 18 23 23 C 1.41382 * 126.57621 * 269.70928 * 22 21 20 24 24 C 1.34518 * 106.83970 * 179.83779 * 23 22 21 25 25 O 1.34303 * 108.41606 * 0.42991 * 24 23 22 26 26 C 1.34302 * 109.48105 * 359.72238 * 25 24 23 27 27 C 1.48183 * 118.51314 * 26.12626 * 9 7 2 28 28 H 0.97003 * 119.99698 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.49593 * 149.00451 * 10 9 7 30 30 H 1.08997 * 109.52061 * 28.92294 * 10 9 7 31 31 H 1.08996 * 109.44159 * 170.03707 * 11 10 9 32 32 H 1.09006 * 109.43479 * 50.16411 * 11 10 9 33 33 H 1.09004 * 108.64013 * 299.72093 * 12 11 10 34 34 H 1.09001 * 108.64625 * 181.88764 * 12 11 10 35 35 H 1.09003 * 109.47162 * 185.00460 * 16 14 13 36 36 H 1.09000 * 109.46852 * 305.00036 * 16 14 13 37 37 H 0.96995 * 119.99845 * 359.97438 * 17 16 14 38 38 H 1.08998 * 109.47483 * 299.99799 * 20 18 17 39 39 H 1.09000 * 109.47482 * 60.00442 * 20 18 17 40 40 H 1.08998 * 109.47161 * 299.99528 * 21 20 18 41 41 H 1.08995 * 109.47320 * 60.00256 * 21 20 18 42 42 H 1.08006 * 126.58147 * 0.02562 * 23 22 21 43 43 H 1.07999 * 125.79169 * 180.11853 * 24 23 22 44 44 H 1.07997 * 125.79384 * 180.02562 * 26 25 24 45 45 H 1.08994 * 109.23367 * 259.06030 * 27 9 7 46 46 H 1.08998 * 109.23186 * 18.48338 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0608 -1.2191 0.2504 9 7 1.3628 -2.3666 -0.3159 10 6 1.8767 -3.6077 0.2157 11 6 2.8900 -4.2140 -0.7865 12 6 2.1762 -4.6909 -1.9883 13 8 1.4797 -3.6613 -2.6864 14 6 0.1731 -3.4485 -2.2150 15 1 -0.1934 -4.3587 -1.7402 16 6 -0.7385 -3.0873 -3.3895 17 7 -0.8359 -4.2299 -4.3014 18 6 -1.5914 -4.1414 -5.4140 19 8 -2.1900 -3.1160 -5.6606 20 6 -1.6911 -5.3165 -6.3523 21 6 -2.6028 -4.9553 -7.5267 22 6 -2.7030 -6.1307 -8.4647 23 6 -1.8648 -6.3996 -9.5710 24 6 -2.3046 -7.5443 -10.1240 25 8 -3.3646 -7.9753 -9.4209 26 6 -3.6108 -7.1220 -8.4135 27 6 0.1671 -2.2966 -1.1883 28 1 -0.4850 0.8401 -0.0004 29 1 1.0541 -4.3062 0.3686 30 1 2.3746 -3.4181 1.1666 31 1 3.4085 -5.0499 -0.3170 32 1 3.6156 -3.4531 -1.0737 33 1 1.4590 -5.4546 -1.6874 34 1 2.8994 -5.1439 -2.6663 35 1 -1.7308 -2.8355 -3.0152 36 1 -0.3231 -2.2318 -3.9220 37 1 -0.3568 -5.0499 -4.1043 38 1 -0.6988 -5.5676 -6.7269 39 1 -2.1058 -6.1725 -5.8198 40 1 -3.5952 -4.7041 -7.1524 41 1 -2.1878 -4.0996 -8.0591 42 1 -1.0295 -5.8024 -9.9058 43 1 -1.8806 -8.0311 -10.9898 44 1 -4.4029 -7.2160 -7.6854 45 1 -0.7303 -2.3680 -0.5740 46 1 0.1647 -1.3442 -1.7183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149521582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:00 Heat of formation + Delta-G solvation = -47.108889 kcal Electronic energy + Delta-G solvation = -27058.939710 eV Core-core repulsion = 23144.095233 eV Total energy + Delta-G solvation = -3914.844477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.80150 -39.71146 -38.71143 -35.30830 -34.99270 -34.52800 -32.59691 -31.72351 -31.02947 -29.55082 -28.62390 -25.95729 -25.36094 -24.27012 -22.44939 -21.85561 -20.96860 -20.53488 -20.13838 -19.56760 -17.78102 -17.12258 -16.70127 -16.29807 -16.17731 -15.80588 -15.61281 -15.05937 -14.86732 -14.76240 -14.10345 -13.93471 -13.63422 -13.34535 -13.06529 -12.94217 -12.70074 -12.57869 -12.46403 -12.32745 -12.14894 -12.10895 -11.75204 -11.14099 -11.10233 -10.84953 -10.72844 -10.60328 -10.22841 -10.04354 -10.01062 -9.90496 -9.73373 -9.62255 -8.89380 -8.83970 -8.78675 -8.39727 -6.69640 -5.77521 -3.20411 1.49812 2.31215 2.76937 2.88349 3.34969 3.41369 3.46881 3.48685 4.27234 4.51086 4.52328 4.57655 4.73967 4.89869 5.03711 5.08457 5.15365 5.38200 5.42384 5.44807 5.47830 5.52255 5.53879 5.62532 5.75011 5.81039 5.89348 5.94971 6.00679 6.02772 6.11841 6.22865 6.26344 6.32152 6.37298 6.47915 6.65909 6.75789 6.84975 6.96436 7.17682 7.57512 7.64419 7.81981 7.96453 8.36094 8.46912 9.22260 9.88929 10.32925 11.30499 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.021016 B = 0.002348 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.992959 B =11921.461564 C =12664.943122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.585 5.585 10 C 0.157 3.843 11 C -0.184 4.184 12 C 0.079 3.921 13 O -0.360 6.360 14 C 0.056 3.944 15 H 0.047 0.953 16 C 0.124 3.876 17 N -0.723 5.723 18 C 0.508 3.492 19 O -0.544 6.544 20 C -0.133 4.133 21 C -0.035 4.035 22 C -0.176 4.176 23 C -0.208 4.208 24 C -0.045 4.045 25 O -0.180 6.180 26 C -0.042 4.042 27 C 0.166 3.834 28 H 0.255 0.745 29 H 0.028 0.972 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.398 0.602 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.201 0.799 44 H 0.202 0.798 45 H 0.037 0.963 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.782 -17.457 -14.528 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.194 4.194 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.306 5.306 10 C 0.029 3.971 11 C -0.224 4.224 12 C 0.002 3.998 13 O -0.278 6.278 14 C -0.004 4.004 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.373 5.373 18 C 0.294 3.706 19 O -0.422 6.422 20 C -0.174 4.174 21 C -0.073 4.073 22 C -0.178 4.178 23 C -0.227 4.227 24 C -0.113 4.113 25 O -0.075 6.075 26 C -0.109 4.109 27 C 0.040 3.960 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.232 0.768 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.166 0.834 43 H 0.217 0.783 44 H 0.218 0.782 45 H 0.055 0.945 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.441 -16.709 -14.882 22.812 hybrid contribution 0.906 0.488 0.347 1.086 sum -3.535 -16.221 -14.535 22.065 Atomic orbital electron populations 1.70015 1.05190 1.25677 1.54208 1.25007 0.95323 0.98370 1.00695 0.86369 0.78931 0.83382 0.78074 1.21016 1.21618 1.20970 1.19129 0.92321 0.84986 1.42084 0.91827 1.43567 1.31625 1.02030 1.53416 1.20665 0.93944 0.88178 0.94322 1.22305 1.01150 1.00750 0.98244 1.21291 0.95358 0.88734 0.94397 1.87440 1.26169 1.57233 1.56964 1.23172 0.82846 1.00222 0.94196 0.93549 1.21576 0.99568 0.88870 0.89974 1.46037 1.49602 1.17736 1.23969 1.20646 0.78829 0.89480 0.81662 1.90713 1.45645 1.31590 1.74208 1.21640 1.02474 0.97157 0.96090 1.19698 1.00641 0.94122 0.92838 1.20542 0.98308 0.99349 0.99570 1.21818 1.03426 0.99060 0.98439 1.24022 0.90202 0.97544 0.99490 1.84065 1.41867 1.46139 1.35462 1.23920 1.02684 0.91019 0.93313 1.21632 0.89134 0.95791 0.89481 0.93524 0.95388 0.93136 0.92378 0.91135 0.94815 0.91599 0.90191 0.90519 0.76844 0.88899 0.89081 0.90236 0.90068 0.83434 0.78251 0.78181 0.94523 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.06 10.98 55.49 0.61 -25.45 16 2 C 0.00 0.12 4.88 -17.43 -0.09 0.04 16 3 Si 0.90 22.00 29.58 -169.99 -5.03 16.97 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.26 -6.97 9.43 -15.06 -0.14 -7.11 16 8 H 0.06 1.72 7.88 -52.48 -0.41 1.31 16 9 N -0.59 -14.34 2.59 -171.48 -0.44 -14.78 16 10 C 0.16 3.18 5.68 -4.14 -0.02 3.15 16 11 C -0.18 -3.14 6.04 -28.31 -0.17 -3.31 16 12 C 0.08 1.23 6.04 34.59 0.21 1.44 16 13 O -0.36 -6.71 9.78 -34.09 -0.33 -7.04 16 14 C 0.06 1.01 2.35 -26.05 -0.06 0.95 16 15 H 0.05 0.76 7.21 -51.93 -0.37 0.39 16 16 C 0.12 2.09 5.23 -4.04 -0.02 2.07 16 17 N -0.72 -9.80 5.50 -60.29 -0.33 -10.14 16 18 C 0.51 7.00 7.83 -10.98 -0.09 6.91 16 19 O -0.54 -9.75 15.98 5.56 0.09 -9.66 16 20 C -0.13 -1.28 5.68 -27.88 -0.16 -1.44 16 21 C -0.04 -0.35 5.02 -27.88 -0.14 -0.49 16 22 C -0.18 -1.63 5.42 -104.74 -0.57 -2.20 16 23 C -0.21 -1.78 10.87 -39.70 -0.43 -2.21 16 24 C -0.05 -0.34 12.09 29.42 0.36 0.02 16 25 O -0.18 -1.61 10.65 5.71 0.06 -1.55 16 26 C -0.04 -0.35 12.01 29.41 0.35 0.01 16 27 C 0.17 3.85 4.50 -2.43 -0.01 3.84 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.05 1.03 7.97 -51.93 -0.41 0.62 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.03 0.46 7.28 -51.93 -0.38 0.08 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.40 4.43 8.46 -40.82 -0.35 4.08 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 41 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 42 H 0.15 1.08 8.06 -52.48 -0.42 0.65 16 43 H 0.20 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.20 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.04 0.91 8.02 -51.93 -0.42 0.49 16 46 H 0.08 2.22 6.24 -51.93 -0.32 1.90 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -33.15 376.26 -7.98 -41.13 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.29 Total: 3.16 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -0.98 Total: 1.69 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.17 Total: -50.37 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.18 Total: -18.25 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.15 -7.98 -41.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149521582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.980 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds