Wall clock time and date at job start Fri Apr 10 2020 14:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00092 * 2 1 4 4 H 1.48495 * 109.46873 * 239.99580 * 3 2 1 5 5 H 1.48496 * 109.47258 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46865 * 119.99727 * 3 2 1 7 7 C 1.38816 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99806 * 195.49300 * 7 2 1 9 9 N 1.36933 * 120.00011 * 15.50016 * 7 2 1 10 10 C 1.44456 * 118.51103 * 206.10791 * 9 7 2 11 11 C 1.54880 * 109.32854 * 268.95360 * 10 9 7 12 12 C 1.47690 * 109.67855 * 290.10821 * 11 10 9 13 13 O 1.42561 * 113.66796 * 60.80184 * 12 11 10 14 14 C 1.40525 * 113.53971 * 272.23609 * 13 12 11 15 15 H 1.09005 * 109.40433 * 335.17065 * 14 13 12 16 16 C 1.52996 * 109.40651 * 215.41027 * 14 13 12 17 17 N 1.46504 * 109.47086 * 65.00228 * 16 14 13 18 18 C 1.34781 * 119.99542 * 179.97438 * 17 16 14 19 19 O 1.21273 * 120.00109 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.99295 * 179.97438 * 18 17 16 21 21 C 1.53004 * 109.46639 * 180.02562 * 20 18 17 22 22 C 1.50707 * 109.46718 * 180.02562 * 21 20 18 23 23 C 1.41382 * 126.57621 * 269.70928 * 22 21 20 24 24 C 1.34518 * 106.83970 * 179.83779 * 23 22 21 25 25 O 1.34303 * 108.41606 * 0.42991 * 24 23 22 26 26 C 1.34302 * 109.48105 * 359.72238 * 25 24 23 27 27 C 1.48183 * 118.51314 * 26.12626 * 9 7 2 28 28 H 0.97003 * 119.99698 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.49593 * 149.00451 * 10 9 7 30 30 H 1.08997 * 109.52061 * 28.92294 * 10 9 7 31 31 H 1.08996 * 109.44159 * 170.03707 * 11 10 9 32 32 H 1.09006 * 109.43479 * 50.16411 * 11 10 9 33 33 H 1.09004 * 108.64013 * 299.72093 * 12 11 10 34 34 H 1.09001 * 108.64625 * 181.88764 * 12 11 10 35 35 H 1.09003 * 109.47162 * 185.00460 * 16 14 13 36 36 H 1.09000 * 109.46852 * 305.00036 * 16 14 13 37 37 H 0.96995 * 119.99845 * 359.97438 * 17 16 14 38 38 H 1.08998 * 109.47483 * 299.99799 * 20 18 17 39 39 H 1.09000 * 109.47482 * 60.00442 * 20 18 17 40 40 H 1.08998 * 109.47161 * 299.99528 * 21 20 18 41 41 H 1.08995 * 109.47320 * 60.00256 * 21 20 18 42 42 H 1.08006 * 126.58147 * 0.02562 * 23 22 21 43 43 H 1.07999 * 125.79169 * 180.11853 * 24 23 22 44 44 H 1.07997 * 125.79384 * 180.02562 * 26 25 24 45 45 H 1.08994 * 109.23367 * 259.06030 * 27 9 7 46 46 H 1.08998 * 109.23186 * 18.48338 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0608 -1.2191 0.2504 9 7 1.3628 -2.3666 -0.3159 10 6 1.8767 -3.6077 0.2157 11 6 2.8900 -4.2140 -0.7865 12 6 2.1762 -4.6909 -1.9883 13 8 1.4797 -3.6613 -2.6864 14 6 0.1731 -3.4485 -2.2150 15 1 -0.1934 -4.3587 -1.7402 16 6 -0.7385 -3.0873 -3.3895 17 7 -0.8359 -4.2299 -4.3014 18 6 -1.5914 -4.1414 -5.4140 19 8 -2.1900 -3.1160 -5.6606 20 6 -1.6911 -5.3165 -6.3523 21 6 -2.6028 -4.9553 -7.5267 22 6 -2.7030 -6.1307 -8.4647 23 6 -1.8648 -6.3996 -9.5710 24 6 -2.3046 -7.5443 -10.1240 25 8 -3.3646 -7.9753 -9.4209 26 6 -3.6108 -7.1220 -8.4135 27 6 0.1671 -2.2966 -1.1883 28 1 -0.4850 0.8401 -0.0004 29 1 1.0541 -4.3062 0.3686 30 1 2.3746 -3.4181 1.1666 31 1 3.4085 -5.0499 -0.3170 32 1 3.6156 -3.4531 -1.0737 33 1 1.4590 -5.4546 -1.6874 34 1 2.8994 -5.1439 -2.6663 35 1 -1.7308 -2.8355 -3.0152 36 1 -0.3231 -2.2318 -3.9220 37 1 -0.3568 -5.0499 -4.1043 38 1 -0.6988 -5.5676 -6.7269 39 1 -2.1058 -6.1725 -5.8198 40 1 -3.5952 -4.7041 -7.1524 41 1 -2.1878 -4.0996 -8.0591 42 1 -1.0295 -5.8024 -9.9058 43 1 -1.8806 -8.0311 -10.9898 44 1 -4.4029 -7.2160 -7.6854 45 1 -0.7303 -2.3680 -0.5740 46 1 0.1647 -1.3442 -1.7183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149521582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:00 Heat of formation + Delta-G solvation = -69.534501 kcal Electronic energy + Delta-G solvation = -27059.912158 eV Core-core repulsion = 23144.095233 eV Total energy + Delta-G solvation = -3915.816925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.40268 -40.95801 -40.11205 -36.90344 -36.11377 -35.66846 -34.13176 -32.99586 -32.31500 -30.54985 -29.84992 -27.40822 -27.05210 -25.46622 -23.93825 -22.43071 -22.36942 -21.65020 -21.24248 -20.85664 -18.85910 -18.50745 -17.82192 -17.77101 -17.22741 -16.81883 -16.72474 -16.53626 -16.23416 -15.73172 -15.49354 -15.34957 -14.91969 -14.65400 -14.44481 -14.20261 -13.89427 -13.81197 -13.63432 -13.38789 -13.30742 -13.04172 -13.01841 -12.92673 -12.72642 -12.47317 -12.30812 -12.00708 -11.86773 -11.80006 -11.45518 -11.36030 -11.00234 -10.58000 -10.51012 -10.25485 -10.10827 -9.39495 -8.67676 -7.86560 -5.31317 0.91784 1.43103 1.46984 1.52621 1.66827 1.67770 2.21604 2.37834 2.51300 2.92863 3.27147 3.58503 3.72698 3.94485 4.03038 4.04779 4.12498 4.20042 4.22516 4.27612 4.35316 4.41504 4.48630 4.58873 4.62836 4.69510 4.79767 4.84074 4.87261 4.89070 4.91597 5.14487 5.14955 5.22258 5.25877 5.27963 5.38059 5.43709 5.52062 5.61110 5.63532 5.70655 6.25711 6.39144 6.57684 6.59194 7.16640 7.28702 7.93173 8.30603 9.18064 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.021016 B = 0.002348 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.992959 B =11921.461564 C =12664.943122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.960 3.040 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.260 4.260 8 H 0.061 0.939 9 N -0.603 5.603 10 C 0.147 3.853 11 C -0.170 4.170 12 C 0.068 3.932 13 O -0.378 6.378 14 C 0.078 3.922 15 H 0.076 0.924 16 C 0.135 3.865 17 N -0.710 5.710 18 C 0.506 3.494 19 O -0.591 6.591 20 C -0.119 4.119 21 C -0.030 4.030 22 C -0.193 4.193 23 C -0.230 4.230 24 C -0.041 4.041 25 O -0.191 6.191 26 C -0.043 4.043 27 C 0.172 3.828 28 H 0.248 0.752 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.415 0.585 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.154 0.846 43 H 0.233 0.767 44 H 0.225 0.775 45 H 0.012 0.988 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 -20.709 -15.418 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.789 3.211 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.391 4.391 8 H 0.079 0.921 9 N -0.325 5.325 10 C 0.021 3.979 11 C -0.211 4.211 12 C -0.008 4.008 13 O -0.297 6.297 14 C 0.018 3.982 15 H 0.093 0.907 16 C 0.010 3.990 17 N -0.362 5.362 18 C 0.294 3.706 19 O -0.472 6.472 20 C -0.158 4.158 21 C -0.068 4.068 22 C -0.195 4.195 23 C -0.249 4.249 24 C -0.108 4.108 25 O -0.086 6.086 26 C -0.110 4.110 27 C 0.046 3.954 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.251 0.749 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.172 0.828 43 H 0.249 0.751 44 H 0.241 0.759 45 H 0.030 0.970 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.476 -20.030 -15.766 25.727 hybrid contribution 0.660 1.436 0.645 1.707 sum -2.816 -18.594 -15.122 24.131 Atomic orbital electron populations 1.70170 1.06349 1.25676 1.55839 1.25702 0.96084 1.01228 1.01505 0.85450 0.77690 0.79848 0.78147 1.21076 1.22047 1.19898 1.19406 0.92399 0.86392 1.40911 0.92082 1.43815 1.31661 1.02764 1.54280 1.20916 0.95186 0.86999 0.94832 1.22154 0.99717 1.01019 0.98181 1.21580 0.96449 0.88461 0.94335 1.87444 1.26228 1.58640 1.57370 1.22738 0.83444 0.98925 0.93115 0.90655 1.21173 0.98601 0.89238 0.89961 1.45841 1.49716 1.17237 1.23394 1.21441 0.77526 0.90002 0.81626 1.90700 1.47513 1.33802 1.75183 1.21624 1.03593 0.95701 0.94923 1.19566 1.00172 0.93999 0.93062 1.20529 0.99412 0.99446 1.00076 1.22040 1.04087 0.99939 0.98793 1.24653 0.89275 0.97127 0.99702 1.84083 1.42374 1.46444 1.35743 1.24369 1.02768 0.90466 0.93367 1.21389 0.87957 0.96175 0.89916 0.94254 0.93569 0.94088 0.88476 0.94005 0.91747 0.88579 0.91057 0.93651 0.74859 0.87118 0.86168 0.91017 0.92005 0.82823 0.75087 0.75910 0.97012 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 10.98 21.65 0.24 -55.74 16 2 C -0.05 -2.85 4.88 84.86 0.41 -2.44 16 3 Si 0.96 46.43 29.58 68.60 2.03 48.46 16 4 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.26 -14.50 9.43 84.03 0.79 -13.71 16 8 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16 9 N -0.60 -29.85 2.59 -696.44 -1.80 -31.66 16 10 C 0.15 5.75 5.68 87.40 0.50 6.24 16 11 C -0.17 -5.32 6.04 29.57 0.18 -5.14 16 12 C 0.07 1.84 6.04 70.32 0.42 2.27 16 13 O -0.38 -13.38 9.78 -144.91 -1.42 -14.80 16 14 C 0.08 2.76 2.35 31.03 0.07 2.83 16 15 H 0.08 2.25 7.21 -2.38 -0.02 2.24 16 16 C 0.14 4.63 5.23 86.38 0.45 5.09 16 17 N -0.71 -18.18 5.50 -463.06 -2.55 -20.73 16 18 C 0.51 13.48 7.83 87.66 0.69 14.17 16 19 O -0.59 -21.66 15.98 -3.01 -0.05 -21.71 16 20 C -0.12 -2.01 5.68 29.85 0.17 -1.84 16 21 C -0.03 -0.57 5.02 29.85 0.15 -0.42 16 22 C -0.19 -3.27 5.42 -19.94 -0.11 -3.38 16 23 C -0.23 -3.55 10.87 22.19 0.24 -3.31 16 24 C -0.04 -0.51 12.09 66.97 0.81 0.30 16 25 O -0.19 -2.99 10.65 -2.47 -0.03 -3.01 16 26 C -0.04 -0.62 12.01 66.97 0.80 0.19 16 27 C 0.17 8.23 4.50 86.50 0.39 8.62 16 28 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 30 H 0.04 1.65 7.97 -2.39 -0.02 1.63 16 31 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.06 1.41 7.28 -2.38 -0.02 1.39 16 34 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.41 7.86 8.46 -92.71 -0.78 7.07 16 38 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 41 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 42 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 43 H 0.23 1.07 8.06 -2.91 -0.02 1.04 16 44 H 0.22 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.01 0.61 8.02 -2.39 -0.02 0.60 16 46 H 0.04 2.31 6.24 -2.39 -0.01 2.30 16 Total: -1.00 -75.89 376.26 2.59 -73.30 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.19 Total: 16.43 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 5.97 Total: 9.46 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -4.11 Total: -108.13 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.49 Total: -39.52 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -75.89 2.59 -73.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149521582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.764 kcal (2) G-P(sol) polarization free energy of solvation -75.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds