Wall clock time and date at job start Fri Apr 10 2020 14:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47325 * 23.99091 * 3 2 1 5 5 N 1.46507 * 109.46871 * 143.99282 * 3 2 1 6 6 C 1.34776 * 119.99504 * 274.99612 * 5 3 2 7 7 O 1.21348 * 120.00086 * 0.02562 * 6 5 3 8 8 C 1.49449 * 119.99649 * 179.97438 * 6 5 3 9 9 O 1.21348 * 120.00266 * 0.02562 * 8 6 5 10 10 N 1.34781 * 120.00009 * 179.97438 * 8 6 5 11 11 C 1.46496 * 119.99924 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46996 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47163 * 59.99734 * 12 11 10 14 14 C 1.52994 * 109.47130 * 299.99950 * 12 11 10 15 15 C 1.50698 * 109.47160 * 179.97438 * 12 11 10 16 16 H 1.07995 * 120.00035 * 354.24029 * 15 12 11 17 17 C 1.37876 * 119.99985 * 174.23718 * 15 12 11 18 18 N 1.31515 * 120.00326 * 209.34672 * 17 15 12 19 19 Si 1.86803 * 120.00204 * 29.34739 * 17 15 12 20 20 H 1.48495 * 109.47217 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.47099 * 300.00253 * 19 17 15 22 22 H 1.48500 * 109.46725 * 59.99893 * 19 17 15 23 23 C 1.52999 * 109.47009 * 263.98844 * 3 2 1 24 24 H 1.09000 * 110.33128 * 185.70653 * 23 3 2 25 25 C 1.54472 * 110.37330 * 63.45410 * 23 3 2 26 26 C 1.54513 * 104.06538 * 217.18927 * 25 23 3 27 27 C 1.54476 * 104.06050 * 0.02562 * 26 25 23 28 28 O 1.44430 * 110.37411 * 307.95209 * 23 3 2 29 29 H 4.18742 * 15.04084 * 0.02562 * 4 2 1 30 30 H 0.96995 * 119.99836 * 94.99728 * 5 3 2 31 31 H 0.97000 * 119.99785 * 0.02562 * 10 8 6 32 32 H 1.08991 * 109.47777 * 59.99854 * 11 10 8 33 33 H 1.09007 * 109.47093 * 299.99292 * 11 10 8 34 34 H 1.08997 * 109.47006 * 175.40762 * 13 12 11 35 35 H 1.09000 * 109.47152 * 295.41052 * 13 12 11 36 36 H 1.08998 * 109.47183 * 55.40628 * 13 12 11 37 37 H 1.09001 * 109.46861 * 305.31244 * 14 12 11 38 38 H 1.08998 * 109.47672 * 65.31070 * 14 12 11 39 39 H 1.09006 * 109.47182 * 185.31413 * 14 12 11 40 40 H 0.97006 * 119.99683 * 354.99899 * 18 17 15 41 41 H 1.09002 * 110.51512 * 335.83218 * 25 23 3 42 42 H 1.09001 * 110.51258 * 98.40783 * 25 23 3 43 43 H 1.09002 * 110.51357 * 118.64283 * 26 25 23 44 44 H 1.08997 * 110.51467 * 241.21955 * 26 25 23 45 45 H 1.08998 * 110.37723 * 142.81286 * 27 26 25 46 46 H 1.09000 * 110.36994 * 265.14714 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.9380 -0.4178 5 7 3.1338 1.1183 -0.8121 6 6 3.2626 0.9760 -2.1461 7 8 2.9741 -0.0775 -2.6746 8 6 3.7597 2.1162 -2.9745 9 8 4.0477 3.1699 -2.4461 10 7 3.8890 1.9739 -4.3086 11 6 4.3767 3.0914 -5.1206 12 6 4.4284 2.6694 -6.5903 13 6 3.0260 2.2738 -7.0570 14 6 5.3731 1.4760 -6.7453 15 6 4.9296 3.8192 -7.4257 16 1 5.0970 4.7843 -6.9710 17 6 5.1744 3.6389 -8.7705 18 7 6.0970 4.3568 -9.3731 19 14 4.1956 2.3749 -9.7369 20 1 4.6464 2.3760 -11.1518 21 1 4.4103 1.0281 -9.1494 22 1 2.7516 2.7163 -9.6777 23 6 3.1559 0.1520 1.4346 24 1 4.2410 0.2554 1.4419 25 6 2.7255 -1.0608 2.2890 26 6 2.4047 -0.4510 3.6719 27 6 2.6785 1.0583 3.4892 28 8 2.5379 1.2921 2.0702 29 1 -1.0500 -0.0008 -0.0009 30 1 3.3641 1.9605 -0.3896 31 1 3.6591 1.1315 -4.7309 32 1 5.3755 3.3736 -4.7879 33 1 3.7034 3.9416 -5.0106 34 1 3.0474 2.0516 -8.1238 35 1 2.6961 1.3915 -6.5086 36 1 2.3356 3.0964 -6.8709 37 1 6.3474 1.7270 -6.3261 38 1 4.9614 0.6157 -6.2176 39 1 5.4836 1.2349 -7.8026 40 1 6.5545 5.0628 -8.8900 41 1 1.8390 -1.5319 1.8644 42 1 3.5396 -1.7815 2.3667 43 1 1.3595 -0.6205 3.9309 44 1 3.0593 -0.8707 4.4357 45 1 1.9489 1.6465 4.0457 46 1 3.6903 1.3023 3.8130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817838210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:45 Heat of formation + Delta-G solvation = -51.294192 kcal Electronic energy + Delta-G solvation = -27200.933568 eV Core-core repulsion = 23285.907603 eV Total energy + Delta-G solvation = -3915.025966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76547 -39.89438 -38.48204 -36.75682 -35.84734 -33.48491 -32.84873 -32.36660 -31.47340 -30.44971 -27.19052 -26.35073 -26.04264 -24.58671 -23.26807 -22.63922 -21.78907 -20.17987 -19.39988 -18.90177 -18.21955 -17.02524 -16.84529 -16.66372 -16.27688 -16.00530 -15.62222 -15.38992 -14.91765 -14.64034 -14.38743 -14.17640 -13.77611 -13.59848 -13.17262 -12.93273 -12.74968 -12.63805 -12.26799 -12.06274 -12.03721 -11.81574 -11.74354 -11.55665 -11.35727 -11.20059 -10.79725 -10.65895 -10.45995 -10.22115 -10.20045 -10.09216 -9.93548 -9.68242 -9.46890 -9.08364 -8.90369 -8.71560 -8.05576 -6.57692 -4.10081 1.51751 2.09939 2.62112 2.90692 3.32258 3.33862 3.37916 3.39426 3.61545 3.81537 3.98447 4.13025 4.28819 4.42851 4.42979 4.60645 4.65326 4.78137 4.91943 5.05079 5.13337 5.16908 5.28413 5.34831 5.48507 5.55877 5.71021 5.74851 5.96288 6.00062 6.09198 6.32688 6.38820 6.42225 6.51356 6.59941 6.62773 6.72140 6.91264 6.99601 7.23309 7.41029 7.44866 7.56380 7.83331 8.07955 8.26212 8.32355 8.85618 9.54345 10.82762 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.002409 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.869723 B =11621.021011 C =11995.258699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.193 4.193 3 C 0.265 3.735 4 H 0.124 0.876 5 N -0.697 5.697 6 C 0.512 3.488 7 O -0.517 6.517 8 C 0.498 3.502 9 O -0.528 6.528 10 N -0.685 5.685 11 C 0.139 3.861 12 C 0.035 3.965 13 C -0.152 4.152 14 C -0.144 4.144 15 C -0.610 4.610 16 H 0.060 0.940 17 C 0.041 3.959 18 N -0.887 5.887 19 Si 1.056 2.944 20 H -0.299 1.299 21 H -0.276 1.276 22 H -0.286 1.286 23 C 0.070 3.930 24 H 0.089 0.911 25 C -0.148 4.148 26 C -0.153 4.153 27 C 0.044 3.956 28 O -0.362 6.362 29 H 0.218 0.782 30 H 0.420 0.580 31 H 0.409 0.591 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.029 0.971 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.023 0.977 39 H 0.058 0.942 40 H 0.271 0.729 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 -12.087 25.257 29.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.194 4.194 3 C 0.161 3.839 4 H 0.141 0.859 5 N -0.351 5.351 6 C 0.293 3.707 7 O -0.391 6.391 8 C 0.278 3.722 9 O -0.405 6.405 10 N -0.337 5.337 11 C 0.017 3.983 12 C 0.034 3.966 13 C -0.209 4.209 14 C -0.201 4.201 15 C -0.647 4.647 16 H 0.078 0.922 17 C -0.167 4.167 18 N -0.519 5.519 19 Si 0.890 3.110 20 H -0.227 1.227 21 H -0.203 1.203 22 H -0.215 1.215 23 C 0.012 3.988 24 H 0.107 0.893 25 C -0.186 4.186 26 C -0.190 4.190 27 C -0.032 4.032 28 O -0.281 6.281 29 H 0.235 0.765 30 H 0.258 0.742 31 H 0.246 0.754 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.111 0.889 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.878 -12.562 23.606 27.877 hybrid contribution -0.117 0.609 1.651 1.764 sum -7.995 -11.953 25.257 29.064 Atomic orbital electron populations 1.24888 0.95811 0.99110 0.99536 1.22871 0.94127 1.01412 1.00994 1.17934 0.84522 0.92005 0.89488 0.85869 1.45745 1.65516 1.17350 1.06466 1.20552 0.78333 0.88709 0.83104 1.90755 1.48178 1.28293 1.71888 1.19874 0.80562 0.87805 0.83985 1.90751 1.49620 1.28030 1.72142 1.46221 1.63152 1.18606 1.05759 1.21756 0.98822 0.86806 0.90876 1.18666 0.91792 0.95743 0.90429 1.22383 0.99365 0.99148 0.99970 1.22251 0.99705 0.96647 1.01546 1.21571 1.51312 0.96734 0.95124 0.92190 1.25704 0.94184 1.01151 0.95645 1.70882 1.17394 1.20563 1.43058 0.84073 0.75656 0.76205 0.75100 1.22721 1.20305 1.21465 1.23290 0.97685 0.86960 0.90901 0.89289 1.22950 1.03030 0.97613 0.95030 1.22911 1.02941 0.95879 0.97318 1.23438 1.01591 0.95569 0.82650 1.89231 1.79408 1.41570 1.17887 0.76531 0.74220 0.75361 0.91444 0.91630 0.93780 0.95225 0.93009 0.93470 0.95797 0.92343 0.91861 0.89884 0.89761 0.90519 0.90275 0.88879 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 19.25 29.55 0.57 -1.26 16 2 C -0.19 -2.23 11.10 -37.12 -0.41 -2.64 16 3 C 0.26 2.76 2.38 -70.71 -0.17 2.59 16 4 H 0.12 1.23 7.58 -51.93 -0.39 0.83 16 5 N -0.70 -8.64 5.03 -56.98 -0.29 -8.92 16 6 C 0.51 7.74 7.83 -11.59 -0.09 7.65 16 7 O -0.52 -8.56 16.14 5.50 0.09 -8.47 16 8 C 0.50 8.58 7.89 -11.58 -0.09 8.49 16 9 O -0.53 -10.10 16.48 5.50 0.09 -10.01 16 10 N -0.69 -12.20 5.01 -60.73 -0.30 -12.50 16 11 C 0.14 2.85 4.51 -4.04 -0.02 2.83 16 12 C 0.04 0.79 0.50 -155.66 -0.08 0.71 16 13 C -0.15 -3.18 7.74 37.16 0.29 -2.89 16 14 C -0.14 -3.07 7.90 37.15 0.29 -2.78 16 15 C -0.61 -16.38 8.42 -34.44 -0.29 -16.67 16 16 H 0.06 1.74 7.99 -52.49 -0.42 1.32 16 17 C 0.04 1.14 5.06 -17.82 -0.09 1.05 16 18 N -0.89 -26.40 13.70 55.43 0.76 -25.64 16 19 Si 1.06 25.11 23.53 -169.99 -4.00 21.11 16 20 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.02 5.73 56.52 0.32 -5.70 16 22 H -0.29 -6.49 6.69 56.52 0.38 -6.11 16 23 C 0.07 0.56 3.10 -25.96 -0.08 0.48 16 24 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 25 C -0.15 -0.88 6.46 -25.16 -0.16 -1.04 16 26 C -0.15 -0.77 7.09 -25.16 -0.18 -0.95 16 27 C 0.04 0.28 7.63 37.93 0.29 0.57 16 28 O -0.36 -3.46 10.69 -35.23 -0.38 -3.83 16 29 H 0.22 1.50 7.80 -54.09 -0.42 1.08 16 30 H 0.42 5.06 7.99 -40.82 -0.33 4.73 16 31 H 0.41 6.94 5.71 -40.82 -0.23 6.70 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.04 0.96 2.27 -51.93 -0.12 0.84 16 35 H 0.03 0.53 7.00 -51.93 -0.36 0.17 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.43 7.02 -51.93 -0.36 0.07 16 39 H 0.06 1.31 4.40 -51.93 -0.23 1.08 16 40 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16 41 H 0.08 0.55 6.98 -51.93 -0.36 0.19 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -32.04 371.85 -5.36 -37.39 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.71 Total: 9.14 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.22 Total: -3.86 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.17 Total: -47.06 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.20 Total: -22.31 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -4.00 Total: 21.11 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.04 -5.36 -37.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817838210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.901 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds