Wall clock time and date at job start Fri Apr 10 2020 14:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47325 * 23.99091 * 3 2 1 5 5 N 1.46507 * 109.46871 * 143.99282 * 3 2 1 6 6 C 1.34776 * 119.99504 * 274.99612 * 5 3 2 7 7 O 1.21348 * 120.00086 * 0.02562 * 6 5 3 8 8 C 1.49449 * 119.99649 * 179.97438 * 6 5 3 9 9 O 1.21348 * 120.00266 * 0.02562 * 8 6 5 10 10 N 1.34781 * 120.00009 * 179.97438 * 8 6 5 11 11 C 1.46496 * 119.99924 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46996 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47163 * 59.99734 * 12 11 10 14 14 C 1.52994 * 109.47130 * 299.99950 * 12 11 10 15 15 C 1.50698 * 109.47160 * 179.97438 * 12 11 10 16 16 H 1.07995 * 120.00035 * 354.24029 * 15 12 11 17 17 C 1.37876 * 119.99985 * 174.23718 * 15 12 11 18 18 N 1.31515 * 120.00326 * 209.34672 * 17 15 12 19 19 Si 1.86803 * 120.00204 * 29.34739 * 17 15 12 20 20 H 1.48495 * 109.47217 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.47099 * 300.00253 * 19 17 15 22 22 H 1.48500 * 109.46725 * 59.99893 * 19 17 15 23 23 C 1.52999 * 109.47009 * 263.98844 * 3 2 1 24 24 H 1.09000 * 110.33128 * 185.70653 * 23 3 2 25 25 C 1.54472 * 110.37330 * 63.45410 * 23 3 2 26 26 C 1.54513 * 104.06538 * 217.18927 * 25 23 3 27 27 C 1.54476 * 104.06050 * 0.02562 * 26 25 23 28 28 O 1.44430 * 110.37411 * 307.95209 * 23 3 2 29 29 H 4.18742 * 15.04084 * 0.02562 * 4 2 1 30 30 H 0.96995 * 119.99836 * 94.99728 * 5 3 2 31 31 H 0.97000 * 119.99785 * 0.02562 * 10 8 6 32 32 H 1.08991 * 109.47777 * 59.99854 * 11 10 8 33 33 H 1.09007 * 109.47093 * 299.99292 * 11 10 8 34 34 H 1.08997 * 109.47006 * 175.40762 * 13 12 11 35 35 H 1.09000 * 109.47152 * 295.41052 * 13 12 11 36 36 H 1.08998 * 109.47183 * 55.40628 * 13 12 11 37 37 H 1.09001 * 109.46861 * 305.31244 * 14 12 11 38 38 H 1.08998 * 109.47672 * 65.31070 * 14 12 11 39 39 H 1.09006 * 109.47182 * 185.31413 * 14 12 11 40 40 H 0.97006 * 119.99683 * 354.99899 * 18 17 15 41 41 H 1.09002 * 110.51512 * 335.83218 * 25 23 3 42 42 H 1.09001 * 110.51258 * 98.40783 * 25 23 3 43 43 H 1.09002 * 110.51357 * 118.64283 * 26 25 23 44 44 H 1.08997 * 110.51467 * 241.21955 * 26 25 23 45 45 H 1.08998 * 110.37723 * 142.81286 * 27 26 25 46 46 H 1.09000 * 110.36994 * 265.14714 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.9380 -0.4178 5 7 3.1338 1.1183 -0.8121 6 6 3.2626 0.9760 -2.1461 7 8 2.9741 -0.0775 -2.6746 8 6 3.7597 2.1162 -2.9745 9 8 4.0477 3.1699 -2.4461 10 7 3.8890 1.9739 -4.3086 11 6 4.3767 3.0914 -5.1206 12 6 4.4284 2.6694 -6.5903 13 6 3.0260 2.2738 -7.0570 14 6 5.3731 1.4760 -6.7453 15 6 4.9296 3.8192 -7.4257 16 1 5.0970 4.7843 -6.9710 17 6 5.1744 3.6389 -8.7705 18 7 6.0970 4.3568 -9.3731 19 14 4.1956 2.3749 -9.7369 20 1 4.6464 2.3760 -11.1518 21 1 4.4103 1.0281 -9.1494 22 1 2.7516 2.7163 -9.6777 23 6 3.1559 0.1520 1.4346 24 1 4.2410 0.2554 1.4419 25 6 2.7255 -1.0608 2.2890 26 6 2.4047 -0.4510 3.6719 27 6 2.6785 1.0583 3.4892 28 8 2.5379 1.2921 2.0702 29 1 -1.0500 -0.0008 -0.0009 30 1 3.3641 1.9605 -0.3896 31 1 3.6591 1.1315 -4.7309 32 1 5.3755 3.3736 -4.7879 33 1 3.7034 3.9416 -5.0106 34 1 3.0474 2.0516 -8.1238 35 1 2.6961 1.3915 -6.5086 36 1 2.3356 3.0964 -6.8709 37 1 6.3474 1.7270 -6.3261 38 1 4.9614 0.6157 -6.2176 39 1 5.4836 1.2349 -7.8026 40 1 6.5545 5.0628 -8.8900 41 1 1.8390 -1.5319 1.8644 42 1 3.5396 -1.7815 2.3667 43 1 1.3595 -0.6205 3.9309 44 1 3.0593 -0.8707 4.4357 45 1 1.9489 1.6465 4.0457 46 1 3.6903 1.3023 3.8130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817838210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:44 Heat of formation + Delta-G solvation = -75.670719 kcal Electronic energy + Delta-G solvation = -27201.990614 eV Core-core repulsion = 23285.907603 eV Total energy + Delta-G solvation = -3916.083011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92922 -40.70037 -39.74221 -38.43856 -36.81368 -35.15537 -33.74902 -33.39110 -32.94747 -31.14327 -28.48491 -28.02302 -27.14768 -26.49341 -24.53114 -23.30668 -22.37601 -21.40571 -21.09533 -20.08161 -19.30914 -18.66335 -18.07230 -17.49514 -17.22792 -16.92441 -16.71693 -16.52143 -16.39816 -15.96408 -15.63854 -15.20546 -14.78155 -14.64279 -14.47682 -14.43697 -14.23839 -14.01007 -13.80811 -13.62324 -13.03756 -12.94858 -12.69225 -12.54130 -12.49671 -12.19023 -12.05129 -11.89687 -11.72115 -11.71538 -11.56505 -11.19538 -11.03330 -10.81591 -10.79293 -10.71074 -10.66794 -10.27876 -10.17555 -8.78650 -6.30728 0.23147 1.03101 1.45303 1.52016 1.74621 1.81254 1.89293 2.05154 2.46810 2.65909 2.82436 3.01845 3.28205 3.35781 3.55842 3.76048 3.98602 4.02285 4.11830 4.24407 4.25052 4.36650 4.39896 4.42370 4.70747 4.71763 4.77373 4.82363 4.84696 4.88810 4.94798 4.97565 5.01064 5.03674 5.04684 5.09828 5.16180 5.25473 5.48424 5.72540 5.77787 5.83945 6.03776 6.12609 6.26779 6.59117 6.60808 6.64780 6.86209 7.41751 8.60750 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.002409 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.869723 B =11621.021011 C =11995.258699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.227 4.227 3 C 0.260 3.740 4 H 0.128 0.872 5 N -0.684 5.684 6 C 0.520 3.480 7 O -0.530 6.530 8 C 0.500 3.500 9 O -0.549 6.549 10 N -0.680 5.680 11 C 0.154 3.846 12 C 0.031 3.969 13 C -0.152 4.152 14 C -0.142 4.142 15 C -0.611 4.611 16 H 0.021 0.979 17 C -0.007 4.007 18 N -0.923 5.923 19 Si 1.089 2.911 20 H -0.310 1.310 21 H -0.238 1.238 22 H -0.267 1.267 23 C 0.071 3.929 24 H 0.101 0.899 25 C -0.145 4.145 26 C -0.147 4.147 27 C 0.037 3.963 28 O -0.391 6.391 29 H 0.245 0.755 30 H 0.422 0.578 31 H 0.417 0.583 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.037 0.963 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.255 0.745 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 -14.863 27.024 32.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.228 4.228 3 C 0.157 3.843 4 H 0.145 0.855 5 N -0.336 5.336 6 C 0.301 3.699 7 O -0.406 6.406 8 C 0.281 3.719 9 O -0.428 6.428 10 N -0.333 5.333 11 C 0.031 3.969 12 C 0.030 3.970 13 C -0.208 4.208 14 C -0.199 4.199 15 C -0.648 4.648 16 H 0.039 0.961 17 C -0.208 4.208 18 N -0.557 5.557 19 Si 0.915 3.085 20 H -0.239 1.239 21 H -0.164 1.164 22 H -0.193 1.193 23 C 0.013 3.987 24 H 0.119 0.881 25 C -0.183 4.183 26 C -0.185 4.185 27 C -0.039 4.039 28 O -0.310 6.310 29 H 0.261 0.739 30 H 0.260 0.740 31 H 0.255 0.745 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.431 -15.356 25.442 31.178 hybrid contribution 0.350 1.578 1.249 2.043 sum -9.081 -13.778 26.691 31.380 Atomic orbital electron populations 1.25698 0.96773 0.97867 0.98516 1.23272 0.94909 1.02573 1.02038 1.18210 0.84397 0.91133 0.90570 0.85458 1.45764 1.64200 1.18087 1.05597 1.20012 0.78569 0.87601 0.83741 1.90752 1.49261 1.28368 1.72261 1.20270 0.79704 0.88190 0.83784 1.90744 1.50355 1.29185 1.72513 1.45981 1.63324 1.18021 1.05947 1.21320 0.97835 0.87350 0.90414 1.18619 0.93264 0.94549 0.90606 1.22316 0.97755 1.00651 1.00121 1.22174 0.99161 0.97232 1.01345 1.21779 1.50544 0.96790 0.95720 0.96091 1.27018 0.94111 1.02596 0.97028 1.71015 1.19562 1.21786 1.43326 0.83712 0.75278 0.76087 0.73378 1.23932 1.16354 1.19334 1.23367 0.98100 0.87633 0.89614 0.88095 1.22965 1.03373 0.97079 0.94903 1.22906 1.03423 0.94882 0.97302 1.23630 1.02432 0.96633 0.81235 1.89196 1.79825 1.42407 1.19596 0.73865 0.74046 0.74471 0.93053 0.92852 0.94117 0.91783 0.93164 0.94389 0.92222 0.93276 0.93521 0.90698 0.87814 0.90573 0.88347 0.88495 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 19.25 74.32 1.43 -1.80 16 2 C -0.23 -4.90 11.10 31.12 0.35 -4.55 16 3 C 0.26 5.03 2.38 43.18 0.10 5.13 16 4 H 0.13 2.33 7.58 -2.39 -0.02 2.31 16 5 N -0.68 -16.04 5.03 -452.54 -2.28 -18.32 16 6 C 0.52 14.91 7.83 87.27 0.68 15.59 16 7 O -0.53 -16.46 16.14 -3.24 -0.05 -16.51 16 8 C 0.50 16.64 7.89 87.27 0.69 17.33 16 9 O -0.55 -20.78 16.48 -3.24 -0.05 -20.84 16 10 N -0.68 -23.09 5.01 -464.42 -2.33 -25.42 16 11 C 0.15 6.25 4.51 86.38 0.39 6.64 16 12 C 0.03 1.36 0.50 -52.93 -0.03 1.33 16 13 C -0.15 -5.91 7.74 71.98 0.56 -5.36 16 14 C -0.14 -5.74 7.90 71.98 0.57 -5.17 16 15 C -0.61 -33.45 8.42 25.60 0.22 -33.23 16 16 H 0.02 1.27 7.99 -2.91 -0.02 1.25 16 17 C -0.01 -0.38 5.06 84.65 0.43 0.04 16 18 N -0.92 -56.72 13.70 21.45 0.29 -56.43 16 19 Si 1.09 49.36 23.53 68.60 1.61 50.98 16 20 H -0.31 -14.61 7.11 99.48 0.71 -13.91 16 21 H -0.24 -9.39 5.73 99.48 0.57 -8.82 16 22 H -0.27 -11.17 6.69 99.48 0.67 -10.51 16 23 C 0.07 1.01 3.10 31.09 0.10 1.11 16 24 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 25 C -0.15 -1.40 6.46 31.61 0.20 -1.20 16 26 C -0.15 -1.14 7.09 31.61 0.22 -0.92 16 27 C 0.04 0.40 7.63 72.48 0.55 0.95 16 28 O -0.39 -6.94 10.69 -148.98 -1.59 -8.53 16 29 H 0.24 2.74 7.80 -4.42 -0.03 2.71 16 30 H 0.42 9.74 7.99 -92.71 -0.74 9.00 16 31 H 0.42 12.90 5.71 -92.71 -0.53 12.38 16 32 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.04 1.63 2.27 -2.39 -0.01 1.62 16 35 H 0.06 2.05 7.00 -2.39 -0.02 2.04 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.97 7.02 -2.39 -0.02 1.96 16 39 H 0.05 2.07 4.40 -2.38 -0.01 2.06 16 40 H 0.26 15.94 8.73 -92.70 -0.81 15.13 16 41 H 0.07 0.86 6.98 -2.39 -0.02 0.84 16 42 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -70.56 371.85 1.59 -68.97 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.47 Total: 30.19 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 6.46 Total: -4.09 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.31 Total: -100.17 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -1.70 Total: -45.88 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 1.61 Total: 50.98 kcal Total: -70.56 1.59 -68.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817838210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.699 kcal (2) G-P(sol) polarization free energy of solvation -70.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds