Wall clock time and date at job start Fri Apr 10 2020 14:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47595 * 52.08506 * 3 2 1 5 5 N 1.46500 * 109.47155 * 292.08240 * 3 2 1 6 6 C 1.34773 * 119.99837 * 85.27907 * 5 3 2 7 7 O 1.21350 * 119.99806 * 359.72382 * 6 5 3 8 8 C 1.49451 * 120.00397 * 179.72625 * 6 5 3 9 9 O 1.21350 * 119.99797 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00397 * 179.97438 * 8 6 5 11 11 C 1.46494 * 120.00450 * 179.97438 * 10 8 6 12 12 C 1.52993 * 109.47505 * 179.97438 * 11 10 8 13 13 C 1.52991 * 109.47516 * 300.00335 * 12 11 10 14 14 C 1.53000 * 109.46925 * 60.00328 * 12 11 10 15 15 C 1.50707 * 109.47179 * 179.97438 * 12 11 10 16 16 H 1.07995 * 119.99860 * 357.00932 * 15 12 11 17 17 C 1.37874 * 119.99631 * 177.00514 * 15 12 11 18 18 N 1.31518 * 120.00495 * 5.54826 * 17 15 12 19 19 Si 1.86812 * 119.99768 * 185.54363 * 17 15 12 20 20 H 1.48504 * 109.46674 * 85.00230 * 19 17 15 21 21 H 1.48498 * 109.47160 * 205.00438 * 19 17 15 22 22 H 1.48498 * 109.46782 * 325.00701 * 19 17 15 23 23 C 1.53007 * 109.46871 * 172.08604 * 3 2 1 24 24 H 1.09005 * 109.86806 * 174.29623 * 23 3 2 25 25 C 1.54096 * 109.88077 * 295.30426 * 23 3 2 26 26 C 1.54805 * 104.18776 * 121.45217 * 25 23 3 27 27 C 1.54998 * 102.09393 * 20.88403 * 26 25 23 28 28 O 1.43750 * 109.87690 * 53.29328 * 23 3 2 29 29 H 4.18741 * 15.03894 * 0.02562 * 4 2 1 30 30 H 0.96995 * 120.00113 * 265.00357 * 5 3 2 31 31 H 0.97008 * 119.99671 * 359.97438 * 10 8 6 32 32 H 1.09002 * 109.47025 * 300.00493 * 11 10 8 33 33 H 1.09000 * 109.47223 * 59.99566 * 11 10 8 34 34 H 1.09000 * 109.47405 * 53.92867 * 13 12 11 35 35 H 1.08999 * 109.47801 * 173.93294 * 13 12 11 36 36 H 1.09011 * 109.47017 * 293.93413 * 13 12 11 37 37 H 1.09000 * 109.47525 * 60.00042 * 14 12 11 38 38 H 1.09001 * 109.47578 * 179.97438 * 14 12 11 39 39 H 1.08999 * 109.47075 * 299.99504 * 14 12 11 40 40 H 0.97004 * 120.00205 * 179.97438 * 18 17 15 41 41 H 1.08993 * 110.49036 * 240.13206 * 25 23 3 42 42 H 1.09005 * 110.48412 * 2.64839 * 25 23 3 43 43 H 1.09002 * 110.90618 * 139.08022 * 26 25 23 44 44 H 1.08999 * 110.91020 * 262.68477 * 26 25 23 45 45 H 1.08999 * 110.61591 * 81.47056 * 27 26 25 46 46 H 1.08999 * 110.62236 * 204.47531 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0096 -0.6306 -0.8107 5 7 3.1345 -0.5184 1.2799 6 6 3.2692 -1.8471 1.4609 7 8 2.9809 -2.6137 0.5655 8 6 3.7734 -2.3764 2.7645 9 8 4.0620 -1.6098 3.6597 10 7 3.9075 -3.7052 2.9457 11 6 4.4023 -4.2240 4.2232 12 6 4.4584 -5.7518 4.1659 13 6 3.0567 -6.3041 3.8997 14 6 5.3997 -6.1856 3.0404 15 6 4.9680 -6.2855 5.4800 16 1 5.2717 -5.6020 6.2590 17 6 5.0465 -7.6462 5.6875 18 7 4.7812 -8.4779 4.7038 19 14 5.5297 -8.3088 7.3660 20 1 4.3257 -8.3899 8.2314 21 1 6.1211 -9.6622 7.2124 22 1 6.5264 -7.4007 7.9883 23 6 3.1553 1.4297 -0.1986 24 1 4.2405 1.4534 -0.0990 25 6 2.7457 1.9430 -1.5927 26 6 1.9058 3.2098 -1.2989 27 6 2.3714 3.5836 0.1314 28 8 2.5559 2.3019 0.7743 29 1 -1.0500 0.0000 -0.0008 30 1 3.3649 0.0944 1.9956 31 1 3.6764 -4.3180 2.2301 32 1 5.4008 -3.8302 4.4131 33 1 3.7315 -3.9152 5.0250 34 1 2.6454 -5.8357 3.0055 35 1 3.1131 -7.3825 3.7518 36 1 2.4129 -6.0874 4.7522 37 1 6.3984 -5.7922 3.2300 38 1 5.4402 -7.2741 2.9998 39 1 5.0316 -5.7997 2.0899 40 1 4.8367 -9.4353 4.8497 41 1 3.6279 2.1978 -2.1798 42 1 2.1450 1.1967 -2.1126 43 1 2.1422 4.0056 -2.0053 44 1 0.8400 2.9820 -1.3140 45 1 3.3123 4.1328 0.0976 46 1 1.6051 4.1642 0.6451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817838211.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:49 Heat of formation + Delta-G solvation = -62.754223 kcal Electronic energy + Delta-G solvation = -27149.747222 eV Core-core repulsion = 23234.224312 eV Total energy + Delta-G solvation = -3915.522910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.69013 -39.83401 -38.33643 -36.47495 -35.71179 -33.40205 -32.81714 -32.28323 -30.88047 -30.42719 -26.95090 -25.78874 -25.71481 -25.14936 -23.18157 -22.57812 -21.82920 -20.10765 -19.06055 -18.77604 -18.15815 -17.06694 -16.60595 -16.35174 -15.88811 -15.79564 -15.51035 -15.16911 -14.83274 -14.47052 -14.28089 -14.05119 -13.52207 -13.46107 -13.20520 -12.91464 -12.65195 -12.21032 -12.19792 -11.99874 -11.62855 -11.48119 -11.41619 -11.27312 -11.17102 -10.86504 -10.76835 -10.69750 -10.45007 -10.38375 -10.20113 -10.06847 -9.63315 -9.58605 -9.52641 -9.21518 -8.79796 -8.58551 -8.35238 -6.02149 -4.11636 1.63181 2.18767 2.67889 2.99739 3.29595 3.36150 3.37532 3.39399 3.46861 3.94275 4.00973 4.18543 4.33812 4.40681 4.44990 4.60828 4.79179 4.82934 5.02817 5.11655 5.23579 5.24844 5.33178 5.35242 5.49792 5.61981 5.77573 6.05234 6.12664 6.25097 6.43144 6.48236 6.64825 6.83629 6.85971 6.94844 7.01123 7.09529 7.34389 7.46559 7.56433 7.67659 7.72163 7.96225 7.99560 8.13092 8.33001 8.42319 8.88231 9.53802 10.99876 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.032957 B = 0.002286 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.396205 B =12246.619626 C =12522.316241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.190 4.190 3 C 0.259 3.741 4 H 0.122 0.878 5 N -0.697 5.697 6 C 0.511 3.489 7 O -0.517 6.517 8 C 0.497 3.503 9 O -0.532 6.532 10 N -0.680 5.680 11 C 0.128 3.872 12 C 0.056 3.944 13 C -0.132 4.132 14 C -0.133 4.133 15 C -0.508 4.508 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.884 5.884 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.073 3.927 24 H 0.089 0.911 25 C -0.148 4.148 26 C -0.153 4.153 27 C 0.047 3.953 28 O -0.365 6.365 29 H 0.217 0.783 30 H 0.420 0.580 31 H 0.411 0.589 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.009 0.991 35 H 0.083 0.917 36 H 0.030 0.970 37 H 0.027 0.973 38 H 0.087 0.913 39 H 0.008 0.992 40 H 0.260 0.740 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 21.383 -14.012 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.191 4.191 3 C 0.154 3.846 4 H 0.139 0.861 5 N -0.351 5.351 6 C 0.292 3.708 7 O -0.391 6.391 8 C 0.276 3.724 9 O -0.410 6.410 10 N -0.332 5.332 11 C 0.006 3.994 12 C 0.055 3.945 13 C -0.190 4.190 14 C -0.191 4.191 15 C -0.547 4.547 16 H 0.077 0.923 17 C -0.134 4.134 18 N -0.522 5.522 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.200 1.200 23 C 0.015 3.985 24 H 0.106 0.894 25 C -0.186 4.186 26 C -0.190 4.190 27 C -0.030 4.030 28 O -0.284 6.284 29 H 0.234 0.766 30 H 0.258 0.742 31 H 0.248 0.752 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.106 0.894 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.413 21.063 -13.809 25.761 hybrid contribution 0.007 -0.353 0.703 0.786 sum -5.406 20.711 -13.106 25.098 Atomic orbital electron populations 1.24866 0.95792 1.00350 0.98714 1.22917 0.94152 1.00477 1.01578 1.18115 0.84496 0.94077 0.87871 0.86059 1.45737 1.65510 1.07092 1.16748 1.20596 0.78342 0.82930 0.88902 1.90756 1.48259 1.56744 1.43364 1.19869 0.80703 0.84309 0.87511 1.90736 1.50090 1.56975 1.43195 1.46223 1.62474 1.05493 1.18972 1.21937 0.98179 0.97374 0.81885 1.18383 0.93451 0.86710 0.95964 1.21833 0.96597 1.03848 0.96676 1.21876 0.97762 1.04551 0.94894 1.20929 1.43527 0.91653 0.98573 0.92337 1.24884 0.94959 0.96906 0.96696 1.69833 1.49131 1.02654 1.30561 0.86581 0.78709 0.78117 0.84408 1.20623 1.21338 1.19966 1.23039 0.97831 0.88555 0.89122 0.89358 1.22939 1.01064 0.98362 0.96277 1.23106 1.01040 0.97471 0.97408 1.23606 1.00699 0.86375 0.92306 1.88994 1.82369 1.21678 1.35318 0.76597 0.74248 0.75182 0.91949 0.91959 0.97248 0.89843 0.95073 0.95339 0.89430 0.97326 0.92950 0.89826 0.89744 0.90018 0.90326 0.91889 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 19.25 29.55 0.57 -1.35 16 2 C -0.19 -2.27 11.41 -37.12 -0.42 -2.69 16 3 C 0.26 2.83 2.19 -70.72 -0.16 2.67 16 4 H 0.12 1.29 7.57 -51.93 -0.39 0.89 16 5 N -0.70 -9.11 5.02 -56.98 -0.29 -9.39 16 6 C 0.51 8.17 7.84 -11.59 -0.09 8.08 16 7 O -0.52 -9.10 16.14 5.50 0.09 -9.01 16 8 C 0.50 9.00 7.89 -11.59 -0.09 8.91 16 9 O -0.53 -10.52 16.48 5.50 0.09 -10.43 16 10 N -0.68 -12.88 4.90 -60.74 -0.30 -13.17 16 11 C 0.13 2.71 4.50 -4.05 -0.02 2.70 16 12 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 13 C -0.13 -3.05 8.03 37.15 0.30 -2.75 16 14 C -0.13 -3.06 8.10 37.16 0.30 -2.76 16 15 C -0.51 -13.26 8.01 -34.44 -0.28 -13.54 16 16 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 17 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 18 N -0.88 -23.70 9.45 55.43 0.52 -23.17 16 19 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.07 0.61 3.24 -26.16 -0.08 0.52 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 C -0.15 -0.90 6.28 -25.21 -0.16 -1.06 16 26 C -0.15 -0.83 7.16 -24.72 -0.18 -1.01 16 27 C 0.05 0.30 7.72 38.21 0.29 0.60 16 28 O -0.36 -3.56 10.47 -35.23 -0.37 -3.93 16 29 H 0.22 1.57 7.80 -54.09 -0.42 1.15 16 30 H 0.42 5.33 7.93 -40.82 -0.32 5.00 16 31 H 0.41 7.64 5.63 -40.82 -0.23 7.41 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.01 0.18 6.71 -51.93 -0.35 -0.17 16 35 H 0.08 2.10 6.25 -51.93 -0.32 1.78 16 36 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 2.22 6.10 -51.93 -0.32 1.90 16 39 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 40 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.54 7.25 -51.93 -0.38 0.16 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -30.23 380.17 -6.58 -36.81 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.86 Total: 9.64 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -0.18 Total: 1.23 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.06 Total: -45.74 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.19 Total: -23.37 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.23 -6.58 -36.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817838211.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.945 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds