Wall clock time and date at job start Fri Apr 10 2020 14:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47057 * 337.85634 * 3 2 1 5 5 N 1.46508 * 109.46959 * 97.85070 * 3 2 1 6 6 C 1.34773 * 120.00294 * 275.00149 * 5 3 2 7 7 O 1.21347 * 119.99864 * 359.97438 * 6 5 3 8 8 C 1.49446 * 120.00093 * 179.97438 * 6 5 3 9 9 O 1.21347 * 120.00043 * 0.02562 * 8 6 5 10 10 N 1.34774 * 119.99856 * 179.97438 * 8 6 5 11 11 C 1.46508 * 120.00057 * 180.02562 * 10 8 6 12 12 C 1.52995 * 109.47237 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46933 * 299.99841 * 12 11 10 14 14 C 1.52995 * 109.47273 * 60.00006 * 12 11 10 15 15 C 1.50703 * 109.47139 * 180.02562 * 12 11 10 16 16 H 1.08000 * 119.99674 * 357.00566 * 15 12 11 17 17 C 1.37872 * 120.00093 * 177.00634 * 15 12 11 18 18 N 1.31519 * 120.00077 * 5.54000 * 17 15 12 19 19 Si 1.86795 * 119.99937 * 185.53324 * 17 15 12 20 20 H 1.48501 * 109.47458 * 85.00232 * 19 17 15 21 21 H 1.48503 * 109.47290 * 204.99955 * 19 17 15 22 22 H 1.48495 * 109.47379 * 325.00114 * 19 17 15 23 23 C 1.52990 * 109.46993 * 217.84971 * 3 2 1 24 24 H 1.09004 * 110.27663 * 65.64232 * 23 3 2 25 25 C 1.54952 * 110.30871 * 187.83729 * 23 3 2 26 26 C 1.55309 * 100.94223 * 155.36500 * 25 23 3 27 27 C 1.54387 * 102.24815 * 325.86290 * 26 25 23 28 28 O 1.43236 * 107.59016 * 21.36323 * 27 26 25 29 29 H 4.18736 * 15.03992 * 359.97438 * 4 2 1 30 30 H 0.97005 * 119.99631 * 94.99726 * 5 3 2 31 31 H 0.96996 * 120.00455 * 359.72684 * 10 8 6 32 32 H 1.09001 * 109.46516 * 300.00523 * 11 10 8 33 33 H 1.09000 * 109.46679 * 60.00103 * 11 10 8 34 34 H 1.09001 * 109.47625 * 53.93924 * 13 12 11 35 35 H 1.09004 * 109.47340 * 173.94135 * 13 12 11 36 36 H 1.09008 * 109.47353 * 293.93507 * 13 12 11 37 37 H 1.08999 * 109.47222 * 60.00187 * 14 12 11 38 38 H 1.09004 * 109.46861 * 180.02562 * 14 12 11 39 39 H 1.09004 * 109.46747 * 299.99662 * 14 12 11 40 40 H 0.96996 * 119.99789 * 179.97438 * 18 17 15 41 41 H 1.09005 * 111.12285 * 273.28208 * 25 23 3 42 42 H 1.08998 * 111.12753 * 37.44320 * 25 23 3 43 43 H 1.09004 * 110.84343 * 207.67651 * 26 25 23 44 44 H 1.08993 * 111.02193 * 84.13648 * 26 25 23 45 45 H 1.08996 * 109.82810 * 261.84294 * 27 26 25 46 46 H 1.09000 * 109.82393 * 140.87168 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.9510 0.3873 5 7 3.1342 0.1896 -1.3684 6 6 3.2634 -0.8708 -2.1902 7 8 2.9757 -1.9820 -1.7967 8 6 3.7609 -0.6780 -3.5862 9 8 4.0490 0.4332 -3.9796 10 7 3.8905 -1.7384 -4.4078 11 6 4.3787 -1.5495 -5.7762 12 6 4.4308 -2.9015 -6.4903 13 6 5.3753 -3.8402 -5.7369 14 6 3.0285 -3.5122 -6.5290 15 6 4.9336 -2.7073 -7.8977 16 1 5.1444 -1.7132 -8.2633 17 6 5.1245 -3.7986 -8.7183 18 7 4.7659 -4.9972 -8.3126 19 14 5.8924 -3.5748 -10.4063 20 1 7.3722 -3.5881 -10.2828 21 1 5.4602 -4.6814 -11.2974 22 1 5.4554 -2.2772 -10.9809 23 6 3.1554 1.1399 0.8851 24 1 2.8838 0.9604 1.9254 25 6 4.6919 1.2836 0.7453 26 6 4.8858 2.7730 1.1405 27 6 3.6007 3.4279 0.5899 28 8 2.6192 2.3957 0.4393 29 1 -1.0500 -0.0008 0.0008 30 1 3.3645 1.0779 -1.6828 31 1 3.6647 -2.6272 -4.0919 32 1 3.7056 -0.8810 -6.3130 33 1 5.3776 -1.1140 -5.7486 34 1 5.0741 -3.8960 -4.6908 35 1 5.3304 -4.8345 -6.1814 36 1 6.3945 -3.4590 -5.8017 37 1 2.3557 -2.8435 -7.0658 38 1 3.0658 -4.4757 -7.0374 39 1 2.6653 -3.6528 -5.5109 40 1 4.8999 -5.7649 -8.8902 41 1 5.2129 0.6224 1.4378 42 1 5.0115 1.1047 -0.2813 43 1 5.7705 3.1900 0.6592 44 1 4.9457 2.8857 2.2229 45 1 3.8051 3.8879 -0.3768 46 1 3.2404 4.1813 1.2905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817838213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:05 Heat of formation + Delta-G solvation = -62.088366 kcal Electronic energy + Delta-G solvation = -27400.902367 eV Core-core repulsion = 23485.408331 eV Total energy + Delta-G solvation = -3915.494036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -40.77940 -39.78994 -38.34109 -36.49671 -35.74036 -33.40570 -32.73821 -32.36839 -30.89963 -30.42110 -26.98763 -25.92015 -25.73026 -25.20975 -23.30820 -22.27682 -21.58352 -20.37485 -19.09167 -18.69919 -18.18431 -17.30078 -16.52097 -16.41887 -15.87147 -15.76449 -15.44604 -15.02037 -14.87271 -14.59966 -14.30683 -13.87149 -13.61326 -13.51908 -13.21601 -12.92923 -12.68843 -12.22490 -12.21257 -11.97685 -11.73373 -11.51610 -11.43107 -11.28036 -11.18663 -10.87883 -10.71863 -10.70790 -10.40002 -10.38970 -10.21477 -9.92899 -9.64988 -9.59124 -9.53578 -9.23419 -8.81397 -8.61208 -8.36854 -6.03609 -4.13243 1.60449 2.19191 2.69836 2.99514 3.28358 3.31151 3.35106 3.38213 3.45477 3.91759 4.02359 4.07504 4.38976 4.46335 4.47165 4.72416 4.77716 4.79387 4.90776 5.15116 5.23441 5.30464 5.35726 5.43494 5.49768 5.72467 5.77208 6.05242 6.10525 6.22848 6.46190 6.58205 6.62155 6.81579 6.84090 6.92958 6.99445 7.06101 7.32701 7.49049 7.54915 7.65114 7.70143 7.93618 7.98012 8.11444 8.30678 8.40042 8.86689 9.52354 10.98472 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.023445 B = 0.002545 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.986201 B =11000.666772 C =11553.122351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.198 4.198 3 C 0.260 3.740 4 H 0.124 0.876 5 N -0.695 5.695 6 C 0.510 3.490 7 O -0.515 6.515 8 C 0.497 3.503 9 O -0.533 6.533 10 N -0.679 5.679 11 C 0.128 3.872 12 C 0.056 3.944 13 C -0.132 4.132 14 C -0.134 4.134 15 C -0.509 4.509 16 H 0.058 0.942 17 C 0.068 3.932 18 N -0.884 5.884 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.080 3.920 24 H 0.092 0.908 25 C -0.156 4.156 26 C -0.155 4.155 27 C 0.047 3.953 28 O -0.371 6.371 29 H 0.218 0.782 30 H 0.418 0.582 31 H 0.411 0.589 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.008 0.992 35 H 0.083 0.917 36 H 0.030 0.970 37 H 0.027 0.973 38 H 0.087 0.913 39 H 0.008 0.992 40 H 0.261 0.739 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 11.859 20.573 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.199 4.199 3 C 0.156 3.844 4 H 0.142 0.858 5 N -0.350 5.350 6 C 0.292 3.708 7 O -0.389 6.389 8 C 0.276 3.724 9 O -0.411 6.411 10 N -0.331 5.331 11 C 0.006 3.994 12 C 0.056 3.944 13 C -0.189 4.189 14 C -0.191 4.191 15 C -0.548 4.548 16 H 0.077 0.923 17 C -0.134 4.134 18 N -0.522 5.522 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.200 1.200 23 C 0.022 3.978 24 H 0.110 0.890 25 C -0.194 4.194 26 C -0.192 4.192 27 C -0.030 4.030 28 O -0.290 6.290 29 H 0.235 0.765 30 H 0.255 0.745 31 H 0.248 0.752 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.027 0.973 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.106 0.894 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.401 11.661 20.381 23.604 hybrid contribution 0.345 0.107 -0.835 0.910 sum -2.056 11.768 19.547 22.908 Atomic orbital electron populations 1.24901 0.95842 1.00602 0.97812 1.22951 0.94212 1.00517 1.02195 1.17961 0.84433 0.99538 0.82505 0.85840 1.45741 1.65560 1.11502 1.12183 1.20587 0.78413 0.84793 0.87050 1.90761 1.48039 1.24000 1.76107 1.19876 0.80670 0.85886 0.85968 1.90729 1.50117 1.23959 1.76343 1.46231 1.62630 1.09991 1.14253 1.21945 0.98236 1.01211 0.77990 1.18375 0.93455 0.88377 0.94231 1.21835 0.98116 1.03578 0.95410 1.21880 0.96594 1.03599 0.97064 1.20934 1.44383 0.93314 0.96168 0.92337 1.24878 0.95137 0.95218 0.98165 1.69831 1.46625 0.98734 1.36981 0.86580 0.79639 0.77750 0.83846 1.20615 1.21322 1.19961 1.23262 0.92875 0.84243 0.97466 0.88985 1.23384 0.94764 0.97069 1.04164 1.23120 0.98916 0.95179 1.02027 1.23196 0.87775 0.90805 1.01174 1.88518 1.38146 1.16356 1.85998 0.76497 0.74470 0.75161 0.91977 0.91928 0.97258 0.89838 0.95065 0.95339 0.89414 0.97328 0.92930 0.89115 0.89275 0.89567 0.90359 0.90818 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 19.25 29.55 0.57 -1.39 16 2 C -0.20 -2.46 12.42 -37.12 -0.46 -2.92 16 3 C 0.26 2.83 2.41 -70.72 -0.17 2.66 16 4 H 0.12 1.28 7.58 -51.93 -0.39 0.89 16 5 N -0.70 -8.75 4.00 -56.98 -0.23 -8.97 16 6 C 0.51 7.94 7.83 -11.59 -0.09 7.85 16 7 O -0.51 -8.90 16.14 5.50 0.09 -8.81 16 8 C 0.50 8.78 7.89 -11.59 -0.09 8.69 16 9 O -0.53 -10.24 16.48 5.50 0.09 -10.15 16 10 N -0.68 -12.65 4.90 -60.73 -0.30 -12.95 16 11 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 12 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 13 C -0.13 -2.99 8.03 37.16 0.30 -2.69 16 14 C -0.13 -3.07 8.11 37.16 0.30 -2.77 16 15 C -0.51 -13.22 8.01 -34.44 -0.28 -13.49 16 16 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 17 C 0.07 1.78 5.13 -17.82 -0.09 1.68 16 18 N -0.88 -23.59 9.45 55.43 0.52 -23.07 16 19 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.08 0.66 3.22 -25.71 -0.08 0.58 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 25 C -0.16 -1.06 6.45 -24.48 -0.16 -1.21 16 26 C -0.15 -0.87 7.02 -24.78 -0.17 -1.04 16 27 C 0.05 0.34 7.79 37.88 0.30 0.63 16 28 O -0.37 -3.70 10.30 -35.23 -0.36 -4.06 16 29 H 0.22 1.67 7.80 -54.09 -0.42 1.25 16 30 H 0.42 5.07 7.39 -40.82 -0.30 4.77 16 31 H 0.41 7.54 5.63 -40.82 -0.23 7.31 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.01 0.17 6.71 -51.93 -0.35 -0.17 16 35 H 0.08 2.08 6.25 -51.93 -0.32 1.76 16 36 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 2.22 6.11 -51.93 -0.32 1.90 16 39 H 0.01 0.16 6.87 -51.93 -0.36 -0.19 16 40 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.72 6.77 -51.93 -0.35 0.36 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -29.93 379.27 -6.53 -36.46 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.81 Total: 9.80 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.23 Total: 0.45 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.00 Total: -44.99 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.18 Total: -23.02 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.93 -6.53 -36.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817838213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.624 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds