Wall clock time and date at job start Fri Apr 10 2020 14:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47057 * 337.85634 * 3 2 1 5 5 N 1.46508 * 109.46959 * 97.85070 * 3 2 1 6 6 C 1.34773 * 120.00294 * 275.00149 * 5 3 2 7 7 O 1.21347 * 119.99864 * 359.97438 * 6 5 3 8 8 C 1.49446 * 120.00093 * 179.97438 * 6 5 3 9 9 O 1.21347 * 120.00043 * 0.02562 * 8 6 5 10 10 N 1.34774 * 119.99856 * 179.97438 * 8 6 5 11 11 C 1.46508 * 120.00057 * 180.02562 * 10 8 6 12 12 C 1.52995 * 109.47237 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46933 * 299.99841 * 12 11 10 14 14 C 1.52995 * 109.47273 * 60.00006 * 12 11 10 15 15 C 1.50703 * 109.47139 * 180.02562 * 12 11 10 16 16 H 1.08000 * 119.99674 * 357.00566 * 15 12 11 17 17 C 1.37872 * 120.00093 * 177.00634 * 15 12 11 18 18 N 1.31519 * 120.00077 * 5.54000 * 17 15 12 19 19 Si 1.86795 * 119.99937 * 185.53324 * 17 15 12 20 20 H 1.48501 * 109.47458 * 85.00232 * 19 17 15 21 21 H 1.48503 * 109.47290 * 204.99955 * 19 17 15 22 22 H 1.48495 * 109.47379 * 325.00114 * 19 17 15 23 23 C 1.52990 * 109.46993 * 217.84971 * 3 2 1 24 24 H 1.09004 * 110.27663 * 65.64232 * 23 3 2 25 25 C 1.54952 * 110.30871 * 187.83729 * 23 3 2 26 26 C 1.55309 * 100.94223 * 155.36500 * 25 23 3 27 27 C 1.54387 * 102.24815 * 325.86290 * 26 25 23 28 28 O 1.43236 * 107.59016 * 21.36323 * 27 26 25 29 29 H 4.18736 * 15.03992 * 359.97438 * 4 2 1 30 30 H 0.97005 * 119.99631 * 94.99726 * 5 3 2 31 31 H 0.96996 * 120.00455 * 359.72684 * 10 8 6 32 32 H 1.09001 * 109.46516 * 300.00523 * 11 10 8 33 33 H 1.09000 * 109.46679 * 60.00103 * 11 10 8 34 34 H 1.09001 * 109.47625 * 53.93924 * 13 12 11 35 35 H 1.09004 * 109.47340 * 173.94135 * 13 12 11 36 36 H 1.09008 * 109.47353 * 293.93507 * 13 12 11 37 37 H 1.08999 * 109.47222 * 60.00187 * 14 12 11 38 38 H 1.09004 * 109.46861 * 180.02562 * 14 12 11 39 39 H 1.09004 * 109.46747 * 299.99662 * 14 12 11 40 40 H 0.96996 * 119.99789 * 179.97438 * 18 17 15 41 41 H 1.09005 * 111.12285 * 273.28208 * 25 23 3 42 42 H 1.08998 * 111.12753 * 37.44320 * 25 23 3 43 43 H 1.09004 * 110.84343 * 207.67651 * 26 25 23 44 44 H 1.08993 * 111.02193 * 84.13648 * 26 25 23 45 45 H 1.08996 * 109.82810 * 261.84294 * 27 26 25 46 46 H 1.09000 * 109.82393 * 140.87168 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.9510 0.3873 5 7 3.1342 0.1896 -1.3684 6 6 3.2634 -0.8708 -2.1902 7 8 2.9757 -1.9820 -1.7967 8 6 3.7609 -0.6780 -3.5862 9 8 4.0490 0.4332 -3.9796 10 7 3.8905 -1.7384 -4.4078 11 6 4.3787 -1.5495 -5.7762 12 6 4.4308 -2.9015 -6.4903 13 6 5.3753 -3.8402 -5.7369 14 6 3.0285 -3.5122 -6.5290 15 6 4.9336 -2.7073 -7.8977 16 1 5.1444 -1.7132 -8.2633 17 6 5.1245 -3.7986 -8.7183 18 7 4.7659 -4.9972 -8.3126 19 14 5.8924 -3.5748 -10.4063 20 1 7.3722 -3.5881 -10.2828 21 1 5.4602 -4.6814 -11.2974 22 1 5.4554 -2.2772 -10.9809 23 6 3.1554 1.1399 0.8851 24 1 2.8838 0.9604 1.9254 25 6 4.6919 1.2836 0.7453 26 6 4.8858 2.7730 1.1405 27 6 3.6007 3.4279 0.5899 28 8 2.6192 2.3957 0.4393 29 1 -1.0500 -0.0008 0.0008 30 1 3.3645 1.0779 -1.6828 31 1 3.6647 -2.6272 -4.0919 32 1 3.7056 -0.8810 -6.3130 33 1 5.3776 -1.1140 -5.7486 34 1 5.0741 -3.8960 -4.6908 35 1 5.3304 -4.8345 -6.1814 36 1 6.3945 -3.4590 -5.8017 37 1 2.3557 -2.8435 -7.0658 38 1 3.0658 -4.4757 -7.0374 39 1 2.6653 -3.6528 -5.5109 40 1 4.8999 -5.7649 -8.8902 41 1 5.2129 0.6224 1.4378 42 1 5.0115 1.1047 -0.2813 43 1 5.7705 3.1900 0.6592 44 1 4.9457 2.8857 2.2229 45 1 3.8051 3.8879 -0.3768 46 1 3.2404 4.1813 1.2905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817838213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:03 Heat of formation + Delta-G solvation = -81.456670 kcal Electronic energy + Delta-G solvation = -27401.742240 eV Core-core repulsion = 23485.408331 eV Total energy + Delta-G solvation = -3916.333909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.93506 -40.70763 -39.63717 -38.21178 -36.75977 -35.07409 -33.64676 -33.03407 -32.75915 -31.17453 -28.19056 -27.59684 -27.37252 -26.88710 -24.65800 -22.81936 -22.26534 -21.68285 -20.73710 -20.00275 -19.24042 -18.25564 -17.84495 -17.37644 -17.27804 -17.01811 -16.62230 -16.43697 -16.09991 -15.91844 -15.39613 -15.07837 -14.78170 -14.71423 -14.39653 -14.23800 -14.05313 -13.91896 -13.26313 -13.12038 -12.86174 -12.73155 -12.70197 -12.61764 -12.59690 -12.27244 -12.22615 -12.13428 -11.77418 -11.62573 -11.50956 -11.30931 -11.19565 -10.80573 -10.70727 -10.67766 -10.46601 -10.40665 -10.14546 -8.02445 -6.17794 0.27415 1.07576 1.44899 1.47429 1.54882 1.82372 1.91526 2.09061 2.46115 2.72165 2.75473 3.21923 3.25698 3.41481 3.51628 3.80541 3.98061 4.13629 4.22005 4.33483 4.35390 4.39140 4.46431 4.67260 4.78948 4.86898 4.91728 4.94724 4.99563 5.02905 5.03662 5.04109 5.05841 5.15916 5.19499 5.24786 5.47130 5.64205 5.68123 5.84198 6.00817 6.09516 6.17692 6.32266 6.40194 6.60985 6.66852 6.85225 6.92056 7.49960 8.97518 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.023445 B = 0.002545 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.986201 B =11000.666772 C =11553.122351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.235 4.235 3 C 0.255 3.745 4 H 0.128 0.872 5 N -0.678 5.678 6 C 0.518 3.482 7 O -0.533 6.533 8 C 0.499 3.501 9 O -0.549 6.549 10 N -0.680 5.680 11 C 0.143 3.857 12 C 0.051 3.949 13 C -0.122 4.122 14 C -0.124 4.124 15 C -0.528 4.528 16 H 0.052 0.948 17 C 0.028 3.972 18 N -0.901 5.901 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.083 3.917 24 H 0.111 0.889 25 C -0.155 4.155 26 C -0.147 4.147 27 C 0.040 3.960 28 O -0.396 6.396 29 H 0.246 0.754 30 H 0.420 0.580 31 H 0.414 0.586 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.060 0.940 36 H 0.025 0.975 37 H 0.022 0.978 38 H 0.064 0.936 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.069 0.931 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 12.742 22.073 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.236 4.236 3 C 0.152 3.848 4 H 0.146 0.854 5 N -0.332 5.332 6 C 0.298 3.702 7 O -0.409 6.409 8 C 0.279 3.721 9 O -0.428 6.428 10 N -0.332 5.332 11 C 0.020 3.980 12 C 0.051 3.949 13 C -0.179 4.179 14 C -0.182 4.182 15 C -0.567 4.567 16 H 0.070 0.930 17 C -0.172 4.172 18 N -0.539 5.539 19 Si 0.774 3.226 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.198 1.198 23 C 0.026 3.974 24 H 0.128 0.872 25 C -0.193 4.193 26 C -0.184 4.184 27 C -0.036 4.036 28 O -0.316 6.316 29 H 0.262 0.738 30 H 0.258 0.742 31 H 0.251 0.749 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.127 0.873 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.088 0.912 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.318 12.574 21.910 25.368 hybrid contribution 0.256 -0.107 -1.256 1.286 sum -2.062 12.467 20.654 24.213 Atomic orbital electron populations 1.25747 0.96863 0.99666 0.96486 1.23466 0.95176 1.01524 1.03426 1.18250 0.84106 1.01026 0.81460 0.85428 1.45709 1.64107 1.10738 1.12639 1.20092 0.78605 0.85200 0.86254 1.90758 1.49319 1.24687 1.76173 1.20226 0.79874 0.85216 0.86761 1.90719 1.50614 1.24505 1.76922 1.46073 1.63022 1.10495 1.13564 1.21562 0.97872 0.99557 0.79003 1.18369 0.93440 0.89607 0.93522 1.21683 0.97773 1.01981 0.96505 1.21735 0.96536 1.02048 0.97903 1.21235 1.44660 0.93079 0.97728 0.93011 1.25491 0.95589 0.95112 1.01039 1.69947 1.47075 0.99080 1.37815 0.85733 0.78860 0.77527 0.80442 1.20331 1.21185 1.19848 1.23333 0.93674 0.82976 0.97458 0.87179 1.23394 0.93700 0.98382 1.03818 1.23110 0.98286 0.93962 1.03053 1.23350 0.88225 0.90593 1.01476 1.88489 1.39484 1.17269 1.86348 0.73757 0.74183 0.74855 0.92854 0.92410 0.94977 0.92092 0.95600 0.95877 0.91743 0.95264 0.93046 0.87309 0.90783 0.88821 0.88702 0.91246 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 19.25 74.32 1.43 -2.14 16 2 C -0.23 -5.57 12.42 31.13 0.39 -5.19 16 3 C 0.26 5.25 2.41 43.18 0.10 5.35 16 4 H 0.13 2.50 7.58 -2.39 -0.02 2.48 16 5 N -0.68 -16.47 4.00 -452.55 -1.81 -18.28 16 6 C 0.52 15.68 7.83 87.27 0.68 16.36 16 7 O -0.53 -17.92 16.14 -3.24 -0.05 -17.97 16 8 C 0.50 17.28 7.89 87.27 0.69 17.97 16 9 O -0.55 -20.76 16.48 -3.24 -0.05 -20.82 16 10 N -0.68 -24.81 4.90 -464.41 -2.27 -27.09 16 11 C 0.14 5.93 4.50 86.38 0.39 6.32 16 12 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 13 C -0.12 -5.49 8.03 71.98 0.58 -4.92 16 14 C -0.12 -5.71 8.11 71.98 0.58 -5.13 16 15 C -0.53 -27.52 8.01 25.60 0.20 -27.32 16 16 H 0.05 2.70 7.75 -2.91 -0.02 2.68 16 17 C 0.03 1.45 5.13 84.65 0.43 1.88 16 18 N -0.90 -48.38 9.45 21.45 0.20 -48.18 16 19 Si 0.95 42.23 29.54 68.60 2.03 44.25 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.08 1.25 3.22 31.26 0.10 1.35 16 24 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 25 C -0.16 -1.79 6.45 32.05 0.21 -1.59 16 26 C -0.15 -1.30 7.02 31.86 0.22 -1.08 16 27 C 0.04 0.51 7.79 72.45 0.56 1.07 16 28 O -0.40 -7.37 10.30 -148.98 -1.53 -8.91 16 29 H 0.25 3.21 7.80 -4.42 -0.03 3.18 16 30 H 0.42 9.89 7.39 -92.70 -0.69 9.21 16 31 H 0.41 14.72 5.63 -92.71 -0.52 14.20 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.03 1.26 6.71 -2.39 -0.02 1.24 16 35 H 0.06 3.04 6.25 -2.38 -0.01 3.03 16 36 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 3.28 6.11 -2.38 -0.01 3.26 16 39 H 0.03 1.17 6.87 -2.38 -0.02 1.16 16 40 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 41 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.07 1.09 6.77 -2.39 -0.02 1.07 16 43 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -63.15 379.27 2.86 -60.29 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.20 Total: 31.38 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 6.55 Total: 5.31 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -3.88 Total: -93.54 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -1.64 Total: -47.69 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -63.15 2.86 -60.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817838213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.164 kcal (2) G-P(sol) polarization free energy of solvation -63.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds