Wall clock time and date at job start Fri Apr 10 2020 14:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00380 * 2 1 4 4 C 1.38735 * 120.05757 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94324 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05668 * 0.02562 * 5 4 3 7 7 C 1.50692 * 119.94391 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47453 * 89.99861 * 7 6 5 9 9 C 1.53003 * 109.46773 * 59.99951 * 8 7 6 10 10 C 1.52999 * 109.46983 * 300.00051 * 8 7 6 11 11 O 1.42906 * 109.47132 * 299.99868 * 10 8 7 12 12 N 1.46895 * 109.47035 * 180.02562 * 8 7 6 13 13 C 1.46906 * 110.99789 * 179.97438 * 12 8 7 14 14 C 1.50703 * 109.47109 * 179.97438 * 13 12 8 15 15 O 1.21296 * 119.99996 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99978 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99848 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00405 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99358 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99517 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00588 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47149 * 89.99828 * 21 19 17 23 23 H 1.48498 * 109.47388 * 209.99797 * 21 19 17 24 24 H 1.48501 * 109.46930 * 330.00192 * 21 19 17 25 25 C 1.38265 * 120.10990 * 0.25322 * 6 5 4 26 26 C 1.38150 * 120.05671 * 359.45142 * 25 6 5 27 27 H 1.09000 * 109.47417 * 300.00005 * 1 2 3 28 28 H 1.09008 * 109.47187 * 59.99884 * 1 2 3 29 29 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.02502 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.96862 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.47239 * 329.99467 * 7 6 5 33 33 H 1.09005 * 109.46971 * 210.00014 * 7 6 5 34 34 H 1.09007 * 109.46476 * 180.02562 * 9 8 7 35 35 H 1.08992 * 109.47092 * 300.00016 * 9 8 7 36 36 H 1.08993 * 109.47354 * 60.00421 * 9 8 7 37 37 H 1.09000 * 109.47133 * 60.00028 * 10 8 7 38 38 H 1.08997 * 109.46976 * 180.02562 * 10 8 7 39 39 H 0.96697 * 114.00059 * 180.02562 * 11 10 8 40 40 H 1.00902 * 111.00273 * 303.95364 * 12 8 7 41 41 H 1.08992 * 109.47459 * 299.99826 * 13 12 8 42 42 H 1.09004 * 109.47040 * 59.99976 * 13 12 8 43 43 H 0.97002 * 119.99767 * 359.97438 * 16 14 13 44 44 H 0.96997 * 120.00211 * 180.02562 * 20 19 17 45 45 H 1.08004 * 119.97304 * 179.70721 * 25 6 5 46 46 H 1.08000 * 120.02516 * 180.25112 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3021 3.6757 0.0016 7 6 3.9862 5.0183 0.0028 8 6 4.2184 5.4738 -1.4393 9 6 2.8740 5.5871 -2.1610 10 6 5.1001 4.4527 -2.1609 11 8 6.3558 4.3469 -1.4869 12 7 4.8859 6.7824 -1.4381 13 6 5.1260 7.2521 -2.8092 14 6 5.8099 8.5944 -2.7677 15 8 6.0720 9.1088 -1.7010 16 7 6.1304 9.2231 -3.9160 17 6 6.7531 10.4440 -3.8782 18 1 6.9865 10.9021 -2.9285 19 6 7.0839 11.0919 -5.0621 20 7 7.6803 12.2623 -5.0260 21 14 6.6809 10.2993 -6.7049 22 1 5.3266 10.7249 -7.1409 23 1 7.6821 10.7214 -7.7170 24 1 6.7134 8.8215 -6.5626 25 6 1.9212 3.6047 0.0069 26 6 1.2916 2.3750 0.0002 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 4.0209 0.3798 0.0005 31 1 5.1347 2.5748 0.0019 32 1 4.9440 4.9377 0.5170 33 1 3.3580 5.7458 0.5169 34 1 3.0394 5.9111 -3.1885 35 1 2.3792 4.6160 -2.1618 36 1 2.2458 6.3145 -1.6469 37 1 4.6052 3.4816 -2.1618 38 1 5.2659 4.7774 -3.1881 39 1 6.9671 3.7159 -1.8908 40 1 4.3540 7.4591 -0.9116 41 1 5.7603 6.5368 -3.3325 42 1 4.1747 7.3455 -3.3331 43 1 5.9211 8.8115 -4.7690 44 1 7.9109 12.7149 -5.8523 45 1 1.3343 4.5113 0.0121 46 1 0.2130 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933425777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:58 Heat of formation + Delta-G solvation = -86.379260 kcal Electronic energy + Delta-G solvation = -27268.271589 eV Core-core repulsion = 23351.724221 eV Total energy + Delta-G solvation = -3916.547368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.58663 -39.33210 -38.19085 -37.16521 -35.44053 -33.93875 -32.48414 -31.60138 -31.32108 -29.77702 -27.95228 -27.07580 -26.27934 -25.72783 -23.75288 -22.79802 -21.49099 -19.36530 -19.17568 -18.37159 -18.33616 -17.25118 -16.55034 -16.45377 -16.05170 -15.80507 -15.33303 -14.96313 -14.80783 -14.44583 -14.21802 -14.09762 -13.82382 -13.67106 -13.31794 -13.26579 -13.01924 -12.79796 -12.41875 -12.34861 -12.29290 -12.15750 -12.00948 -11.58574 -11.48879 -11.22318 -11.19941 -11.07273 -10.93102 -10.58616 -10.51375 -9.94439 -9.88265 -9.53355 -9.18306 -8.53195 -8.26930 -8.14741 -7.99433 -6.27664 -3.78678 1.11695 1.18607 2.96058 3.04308 3.07896 3.16249 3.49622 3.79762 4.02840 4.12849 4.32727 4.50200 4.62735 4.71867 4.75600 4.77082 4.84547 4.90217 5.02712 5.06881 5.18212 5.18686 5.23616 5.32038 5.40150 5.43319 5.46561 5.52978 5.66923 5.72972 5.77432 5.89252 5.89942 6.00272 6.02998 6.05897 6.14187 6.21429 6.52084 6.59010 7.10394 7.22046 7.61945 7.65605 7.76500 8.18908 8.64166 8.99145 9.46542 9.88033 10.85669 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.027870 B = 0.002366 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.424977 B =11831.280674 C =11991.390038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.117 3.883 4 C -0.153 4.153 5 C -0.072 4.072 6 C -0.106 4.106 7 C -0.062 4.062 8 C 0.123 3.877 9 C -0.189 4.189 10 C 0.087 3.913 11 O -0.548 6.548 12 N -0.645 5.645 13 C 0.045 3.955 14 C 0.453 3.547 15 O -0.562 6.562 16 N -0.593 5.593 17 C -0.303 4.303 18 H 0.119 0.881 19 C 0.040 3.960 20 N -0.883 5.883 21 Si 0.880 3.120 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.077 4.077 26 C -0.209 4.209 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.369 0.631 40 H 0.349 0.651 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.369 0.631 44 H 0.273 0.727 45 H 0.124 0.876 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 -25.502 5.648 30.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.073 3.927 4 C -0.172 4.172 5 C -0.090 4.090 6 C -0.107 4.107 7 C -0.100 4.100 8 C 0.031 3.969 9 C -0.248 4.248 10 C 0.008 3.992 11 O -0.352 6.352 12 N -0.277 5.277 13 C -0.087 4.087 14 C 0.239 3.761 15 O -0.444 6.444 16 N -0.233 5.233 17 C -0.431 4.431 18 H 0.137 0.863 19 C -0.163 4.163 20 N -0.523 5.523 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.095 4.095 26 C -0.228 4.228 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.215 0.785 40 H 0.169 0.831 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.202 0.798 44 H 0.083 0.917 45 H 0.142 0.858 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.234 -24.942 6.731 29.496 hybrid contribution -1.264 -0.514 -2.246 2.628 sum -15.498 -25.456 4.485 30.138 Atomic orbital electron populations 1.23033 0.78528 1.03809 1.01338 1.86057 1.21277 1.27183 1.88920 1.19042 0.92416 0.84033 0.97250 1.20446 0.91274 0.98706 1.06741 1.21026 1.00404 0.90702 0.96851 1.19788 0.93229 0.95419 1.02221 1.20466 1.01404 0.92418 0.95704 1.20858 0.90739 0.90380 0.94945 1.22638 0.97996 1.02719 1.01422 1.22239 0.85144 0.97176 0.94615 1.86644 1.26271 1.66222 1.56031 1.60113 1.51961 1.02874 1.12785 1.21780 0.99196 0.96513 0.91234 1.19727 0.84796 0.86900 0.84706 1.90567 1.57124 1.67426 1.29249 1.42207 1.55141 1.19764 1.06194 1.19434 1.33828 0.93115 0.96762 0.86294 1.25037 0.97317 0.95942 0.97993 1.69623 1.40402 1.14035 1.28251 0.86672 0.79103 0.79317 0.84288 1.19731 1.20202 1.19534 1.20899 0.94115 0.96927 0.97530 1.21194 0.99842 0.92389 1.09332 0.92698 0.92712 0.88357 0.85417 0.84717 0.88940 0.91178 0.92079 0.91593 0.91833 0.93416 0.94022 0.78520 0.83060 0.89535 0.93770 0.79812 0.91685 0.85840 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.97 10.50 -19.42 -0.20 -3.18 16 3 C 0.12 1.15 6.69 -39.22 -0.26 0.89 16 4 C -0.15 -1.47 9.99 -39.43 -0.39 -1.87 16 5 C -0.07 -0.70 7.87 -39.61 -0.31 -1.01 16 6 C -0.11 -1.06 4.00 -104.61 -0.42 -1.48 16 7 C -0.06 -0.70 4.57 -27.88 -0.13 -0.83 16 8 C 0.12 1.47 0.52 -131.60 -0.07 1.41 16 9 C -0.19 -1.96 7.65 37.16 0.28 -1.68 16 10 C 0.09 0.98 4.98 37.16 0.18 1.16 16 11 O -0.55 -6.66 12.42 -35.23 -0.44 -7.10 16 12 N -0.65 -10.28 5.58 -101.21 -0.56 -10.84 16 13 C 0.05 0.77 5.38 -4.97 -0.03 0.75 16 14 C 0.45 10.53 7.82 -10.98 -0.09 10.44 16 15 O -0.56 -15.46 15.78 5.54 0.09 -15.37 16 16 N -0.59 -14.40 5.09 -10.96 -0.06 -14.46 16 17 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 18 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 19 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 20 N -0.88 -26.08 13.96 55.50 0.77 -25.31 16 21 Si 0.88 19.58 27.74 -169.99 -4.71 14.87 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 25 C -0.08 -0.70 7.89 -39.60 -0.31 -1.01 16 26 C -0.21 -1.85 9.04 -39.43 -0.36 -2.20 16 27 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 28 H 0.05 0.26 7.66 -51.92 -0.40 -0.14 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.14 1.23 7.59 -52.48 -0.40 0.83 16 32 H 0.09 1.19 7.63 -51.92 -0.40 0.80 16 33 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.06 0.65 6.41 -51.92 -0.33 0.32 16 35 H 0.07 0.62 6.19 -51.93 -0.32 0.30 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.48 6.17 -51.93 -0.32 0.15 16 38 H 0.04 0.48 6.40 -51.93 -0.33 0.14 16 39 H 0.37 2.91 9.12 45.56 0.42 3.32 16 40 H 0.35 5.74 8.42 -39.29 -0.33 5.41 16 41 H 0.09 1.38 6.30 -51.93 -0.33 1.06 16 42 H 0.04 0.66 6.31 -51.93 -0.33 0.33 16 43 H 0.37 7.87 5.76 -40.82 -0.24 7.64 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.12 0.98 8.04 -52.48 -0.42 0.55 16 46 H 0.12 0.85 6.30 -52.49 -0.33 0.52 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -35.11 367.73 -6.42 -41.53 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -5.70 Total: 16.43 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.15 Total: -2.12 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.15 Total: -50.60 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.55 Total: -25.64 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.11 -6.42 -41.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933425777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.848 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds