Wall clock time and date at job start Fri Apr 10 2020 14:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00380 * 2 1 4 4 C 1.38735 * 120.05757 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94324 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05668 * 0.02562 * 5 4 3 7 7 C 1.50692 * 119.94391 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47453 * 89.99861 * 7 6 5 9 9 C 1.53003 * 109.46773 * 59.99951 * 8 7 6 10 10 C 1.52999 * 109.46983 * 300.00051 * 8 7 6 11 11 O 1.42906 * 109.47132 * 299.99868 * 10 8 7 12 12 N 1.46895 * 109.47035 * 180.02562 * 8 7 6 13 13 C 1.46906 * 110.99789 * 179.97438 * 12 8 7 14 14 C 1.50703 * 109.47109 * 179.97438 * 13 12 8 15 15 O 1.21296 * 119.99996 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99978 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99848 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00405 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99358 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99517 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00588 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47149 * 89.99828 * 21 19 17 23 23 H 1.48498 * 109.47388 * 209.99797 * 21 19 17 24 24 H 1.48501 * 109.46930 * 330.00192 * 21 19 17 25 25 C 1.38265 * 120.10990 * 0.25322 * 6 5 4 26 26 C 1.38150 * 120.05671 * 359.45142 * 25 6 5 27 27 H 1.09000 * 109.47417 * 300.00005 * 1 2 3 28 28 H 1.09008 * 109.47187 * 59.99884 * 1 2 3 29 29 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.02502 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.96862 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.47239 * 329.99467 * 7 6 5 33 33 H 1.09005 * 109.46971 * 210.00014 * 7 6 5 34 34 H 1.09007 * 109.46476 * 180.02562 * 9 8 7 35 35 H 1.08992 * 109.47092 * 300.00016 * 9 8 7 36 36 H 1.08993 * 109.47354 * 60.00421 * 9 8 7 37 37 H 1.09000 * 109.47133 * 60.00028 * 10 8 7 38 38 H 1.08997 * 109.46976 * 180.02562 * 10 8 7 39 39 H 0.96697 * 114.00059 * 180.02562 * 11 10 8 40 40 H 1.00902 * 111.00273 * 303.95364 * 12 8 7 41 41 H 1.08992 * 109.47459 * 299.99826 * 13 12 8 42 42 H 1.09004 * 109.47040 * 59.99976 * 13 12 8 43 43 H 0.97002 * 119.99767 * 359.97438 * 16 14 13 44 44 H 0.96997 * 120.00211 * 180.02562 * 20 19 17 45 45 H 1.08004 * 119.97304 * 179.70721 * 25 6 5 46 46 H 1.08000 * 120.02516 * 180.25112 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3021 3.6757 0.0016 7 6 3.9862 5.0183 0.0028 8 6 4.2184 5.4738 -1.4393 9 6 2.8740 5.5871 -2.1610 10 6 5.1001 4.4527 -2.1609 11 8 6.3558 4.3469 -1.4869 12 7 4.8859 6.7824 -1.4381 13 6 5.1260 7.2521 -2.8092 14 6 5.8099 8.5944 -2.7677 15 8 6.0720 9.1088 -1.7010 16 7 6.1304 9.2231 -3.9160 17 6 6.7531 10.4440 -3.8782 18 1 6.9865 10.9021 -2.9285 19 6 7.0839 11.0919 -5.0621 20 7 7.6803 12.2623 -5.0260 21 14 6.6809 10.2993 -6.7049 22 1 5.3266 10.7249 -7.1409 23 1 7.6821 10.7214 -7.7170 24 1 6.7134 8.8215 -6.5626 25 6 1.9212 3.6047 0.0069 26 6 1.2916 2.3750 0.0002 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 4.0209 0.3798 0.0005 31 1 5.1347 2.5748 0.0019 32 1 4.9440 4.9377 0.5170 33 1 3.3580 5.7458 0.5169 34 1 3.0394 5.9111 -3.1885 35 1 2.3792 4.6160 -2.1618 36 1 2.2458 6.3145 -1.6469 37 1 4.6052 3.4816 -2.1618 38 1 5.2659 4.7774 -3.1881 39 1 6.9671 3.7159 -1.8908 40 1 4.3540 7.4591 -0.9116 41 1 5.7603 6.5368 -3.3325 42 1 4.1747 7.3455 -3.3331 43 1 5.9211 8.8115 -4.7690 44 1 7.9109 12.7149 -5.8523 45 1 1.3343 4.5113 0.0121 46 1 0.2130 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933425777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:57 Heat of formation + Delta-G solvation = -115.409341 kcal Electronic energy + Delta-G solvation = -27269.530428 eV Core-core repulsion = 23351.724221 eV Total energy + Delta-G solvation = -3917.806207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31525 -40.50732 -39.62729 -38.01717 -36.46530 -35.93203 -33.79683 -33.42892 -32.00101 -30.70534 -28.54553 -28.33044 -27.27063 -26.76440 -25.39667 -23.47475 -22.28009 -21.27011 -20.29138 -20.11034 -19.00148 -18.12852 -18.00123 -17.12688 -17.09271 -16.64975 -16.57572 -16.47523 -15.97458 -15.71239 -15.22204 -14.92938 -14.88484 -14.66386 -14.58175 -14.47032 -14.23066 -14.04295 -13.88959 -13.41405 -13.27590 -13.06191 -12.95771 -12.76595 -12.56667 -12.41662 -12.26231 -12.07324 -11.96984 -11.91827 -11.62308 -11.50941 -11.36412 -10.75235 -10.41488 -10.24349 -9.87315 -9.22638 -8.96255 -8.40687 -6.01494 0.43304 0.47100 1.29906 1.35283 1.44481 1.96471 2.23253 2.42172 2.65583 2.85258 3.15370 3.33925 3.50752 3.85269 3.97244 4.00117 4.02499 4.13754 4.18048 4.32116 4.37941 4.40785 4.41026 4.50056 4.51701 4.54115 4.63815 4.70892 4.72060 4.78413 4.78685 4.95642 4.96505 5.14791 5.19343 5.31718 5.38555 5.44212 5.53858 5.79555 5.88127 5.92892 6.14338 6.43965 6.49150 6.60745 6.88757 7.06949 7.40237 7.97399 8.77055 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.027870 B = 0.002366 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.424977 B =11831.280674 C =11991.390038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.109 3.891 4 C -0.164 4.164 5 C -0.075 4.075 6 C -0.113 4.113 7 C -0.055 4.055 8 C 0.121 3.879 9 C -0.183 4.183 10 C 0.087 3.913 11 O -0.571 6.571 12 N -0.666 5.666 13 C 0.063 3.937 14 C 0.450 3.550 15 O -0.613 6.613 16 N -0.592 5.592 17 C -0.328 4.328 18 H 0.054 0.946 19 C -0.017 4.017 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.256 1.256 23 H -0.275 1.275 24 H -0.232 1.232 25 C -0.078 4.078 26 C -0.209 4.209 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.386 0.614 40 H 0.342 0.658 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.137 0.863 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.258 -28.458 3.469 33.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.064 3.936 4 C -0.182 4.182 5 C -0.093 4.093 6 C -0.114 4.114 7 C -0.092 4.092 8 C 0.031 3.969 9 C -0.242 4.242 10 C 0.009 3.991 11 O -0.377 6.377 12 N -0.298 5.298 13 C -0.070 4.070 14 C 0.238 3.762 15 O -0.497 6.497 16 N -0.234 5.234 17 C -0.457 4.457 18 H 0.072 0.928 19 C -0.216 4.216 20 N -0.575 5.575 21 Si 0.786 3.214 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.156 1.156 25 C -0.096 4.096 26 C -0.227 4.227 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.234 0.766 40 H 0.162 0.838 41 H 0.123 0.877 42 H 0.095 0.905 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.155 0.845 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.558 -27.946 4.552 32.800 hybrid contribution -0.543 0.391 -1.397 1.549 sum -17.101 -27.555 3.155 32.583 Atomic orbital electron populations 1.23307 0.76661 1.05404 1.02154 1.86038 1.23292 1.27084 1.88820 1.19230 0.92649 0.84645 0.97083 1.20592 0.91731 0.98915 1.06972 1.21040 1.00477 0.90778 0.96972 1.19680 0.93688 0.94605 1.03395 1.20330 1.00429 0.93344 0.95139 1.20992 0.91670 0.88415 0.95867 1.22573 0.96853 1.03603 1.01157 1.22284 0.84901 0.97638 0.94319 1.86609 1.27073 1.67136 1.56919 1.60102 1.53386 1.04221 1.12091 1.21656 1.00140 0.92484 0.92686 1.20983 0.83218 0.88498 0.83487 1.90543 1.58738 1.69239 1.31199 1.42024 1.55187 1.18535 1.07609 1.19004 1.36243 0.95478 0.94981 0.92762 1.26138 0.96142 0.96238 1.03033 1.69808 1.41454 1.16098 1.30157 0.85354 0.79329 0.80165 0.76602 1.17993 1.19976 1.15573 1.21055 0.93776 0.97696 0.97025 1.21414 1.00927 0.91830 1.08568 0.91888 0.91796 0.86551 0.84783 0.84733 0.91199 0.91064 0.91788 0.90321 0.91487 0.91871 0.93712 0.76576 0.83841 0.87654 0.90480 0.77565 0.91158 0.84527 0.83698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.63 10.50 -92.41 -0.97 -6.60 16 3 C 0.11 1.93 6.69 22.51 0.15 2.08 16 4 C -0.16 -2.93 9.99 22.37 0.22 -2.71 16 5 C -0.07 -1.36 7.87 22.25 0.18 -1.18 16 6 C -0.11 -2.08 4.00 -19.85 -0.08 -2.16 16 7 C -0.05 -1.18 4.57 29.85 0.14 -1.04 16 8 C 0.12 2.70 0.52 3.53 0.00 2.70 16 9 C -0.18 -3.25 7.65 71.98 0.55 -2.70 16 10 C 0.09 1.76 4.98 71.98 0.36 2.12 16 11 O -0.57 -13.15 12.42 -148.98 -1.85 -15.00 16 12 N -0.67 -20.57 5.58 -474.13 -2.64 -23.21 16 13 C 0.06 2.00 5.38 85.56 0.46 2.46 16 14 C 0.45 20.98 7.82 87.66 0.69 21.66 16 15 O -0.61 -35.09 15.78 -3.08 -0.05 -35.14 16 16 N -0.59 -28.53 5.09 -306.98 -1.56 -30.09 16 17 C -0.33 -19.55 10.16 84.04 0.85 -18.70 16 18 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 19 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 20 N -0.93 -56.95 13.96 21.66 0.30 -56.65 16 21 Si 0.97 39.10 27.74 68.60 1.90 41.00 16 22 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 25 C -0.08 -1.24 7.89 22.26 0.18 -1.06 16 26 C -0.21 -3.16 9.04 22.37 0.20 -2.96 16 27 H 0.06 0.43 7.66 -2.39 -0.02 0.41 16 28 H 0.06 0.42 7.66 -2.38 -0.02 0.41 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.13 2.38 7.59 -2.91 -0.02 2.35 16 32 H 0.07 1.82 7.63 -2.38 -0.02 1.80 16 33 H 0.07 1.48 8.08 -2.38 -0.02 1.46 16 34 H 0.06 1.11 6.41 -2.38 -0.02 1.09 16 35 H 0.08 1.22 6.19 -2.39 -0.01 1.20 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.09 6.17 -2.39 -0.01 1.08 16 38 H 0.04 0.88 6.40 -2.39 -0.02 0.86 16 39 H 0.39 5.52 9.12 -74.06 -0.68 4.85 16 40 H 0.34 11.22 8.42 -89.69 -0.76 10.47 16 41 H 0.11 3.03 6.30 -2.39 -0.02 3.02 16 42 H 0.08 2.00 6.31 -2.38 -0.02 1.99 16 43 H 0.39 15.50 5.76 -92.71 -0.53 14.96 16 44 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.14 1.78 8.04 -2.91 -0.02 1.76 16 46 H 0.15 1.52 6.30 -2.91 -0.02 1.50 16 Total: -1.00 -81.17 367.73 -0.38 -81.55 By element: Atomic # 1 Polarization: 45.84 SS G_CDS: -0.98 Total: 44.85 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 5.47 Total: -0.71 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -3.91 Total: -109.95 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -2.87 Total: -56.74 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.90 Total: 41.00 kcal Total: -81.17 -0.38 -81.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933425777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.856 kcal (2) G-P(sol) polarization free energy of solvation -81.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds