Wall clock time and date at job start Fri Apr 10 2020 14:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50696 * 120.00065 * 2 1 4 4 C 1.50702 * 120.00009 * 179.97438 * 2 1 3 5 5 N 1.46502 * 109.47127 * 93.91120 * 4 2 1 6 6 C 1.34272 * 119.38286 * 279.49925 * 5 4 2 7 7 O 1.21281 * 118.96838 * 1.96152 * 6 5 4 8 8 C 1.50275 * 122.05910 * 181.93922 * 6 5 4 9 9 O 1.42821 * 110.49927 * 341.62507 * 8 6 5 10 10 C 1.43390 * 113.34306 * 51.29712 * 9 8 6 11 11 C 1.45915 * 119.38022 * 99.47147 * 5 4 2 12 12 C 1.53484 * 113.80913 * 32.94724 * 11 5 4 13 13 N 1.47666 * 85.99157 * 222.04600 * 12 11 5 14 14 C 1.34772 * 134.46119 * 204.29806 * 13 12 11 15 15 O 1.21285 * 120.00089 * 180.02562 * 14 13 12 16 16 C 1.50700 * 120.00133 * 0.02964 * 14 13 12 17 17 C 1.52996 * 109.47329 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47329 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99476 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00250 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00014 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99854 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47141 * 89.99840 * 22 20 18 24 24 H 1.48496 * 109.47073 * 209.99862 * 22 20 18 25 25 H 1.48506 * 109.47065 * 330.00067 * 22 20 18 26 26 C 1.47666 * 91.08047 * 24.32117 * 13 12 11 27 27 H 1.07992 * 120.00264 * 5.19835 * 1 2 3 28 28 H 1.08001 * 119.99546 * 185.20426 * 1 2 3 29 29 H 1.09005 * 109.46927 * 270.00276 * 3 2 1 30 30 H 1.09004 * 109.46890 * 29.99541 * 3 2 1 31 31 H 1.08987 * 109.47384 * 149.99970 * 3 2 1 32 32 H 1.09001 * 109.47025 * 333.91613 * 4 2 1 33 33 H 1.08994 * 109.47241 * 213.90864 * 4 2 1 34 34 H 1.08998 * 109.27291 * 221.35921 * 8 6 5 35 35 H 1.09001 * 109.26663 * 101.88591 * 8 6 5 36 36 H 1.08997 * 109.70583 * 54.07445 * 10 9 8 37 37 H 1.09004 * 109.70394 * 174.69601 * 10 9 8 38 38 H 1.09006 * 113.78880 * 336.31734 * 12 11 5 39 39 H 1.09000 * 113.78739 * 107.77577 * 12 11 5 40 40 H 1.08997 * 109.47071 * 300.00213 * 16 14 13 41 41 H 1.08999 * 109.46421 * 59.99963 * 16 14 13 42 42 H 1.09005 * 109.47305 * 300.00535 * 17 16 14 43 43 H 1.09000 * 109.46786 * 60.00039 * 17 16 14 44 44 H 0.97004 * 119.99813 * 179.97438 * 21 20 18 45 45 H 1.09006 * 113.79436 * 221.41795 * 26 13 12 46 46 H 1.08997 * 113.79322 * 89.94768 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.3893 -1.6815 -1.3773 6 6 1.4516 -2.2667 -2.1396 7 8 0.3427 -2.4375 -1.6790 8 6 1.7329 -2.7160 -3.5457 9 8 2.9032 -2.0724 -4.0517 10 6 4.0351 -2.1832 -3.1785 11 6 3.7266 -1.4130 -1.8956 12 6 4.8335 -1.5156 -0.8373 13 7 5.3955 -0.2987 -1.4568 14 6 6.6263 0.2468 -1.5186 15 8 6.7989 1.2881 -2.1162 16 6 7.7883 -0.4368 -0.8452 17 6 9.0606 0.3836 -1.0663 18 6 10.2225 -0.2998 -0.3923 19 1 10.0688 -1.2268 0.1400 20 6 11.4818 0.2579 -0.4563 21 7 12.4958 -0.3388 0.1314 22 14 11.7477 1.8609 -1.3778 23 1 11.5600 3.0034 -0.4479 24 1 13.1264 1.8924 -1.9286 25 1 10.7681 1.9613 -2.4894 26 6 4.0684 0.0811 -1.9811 27 1 -0.5400 0.9314 -0.0847 28 1 -0.5399 -0.9315 0.0848 29 1 2.2452 1.6197 -1.0277 30 1 1.4744 2.0647 0.5138 31 1 3.0159 1.1748 0.5138 32 1 1.4459 -2.0811 0.4528 33 1 2.9838 -1.1931 0.5738 34 1 0.8824 -2.4665 -4.1801 35 1 1.8835 -3.7955 -3.5550 36 1 4.2166 -3.2319 -2.9432 37 1 4.9146 -1.7565 -3.6608 38 1 4.4811 -1.3668 0.1834 39 1 5.4658 -2.3968 -0.9464 40 1 7.5908 -0.5208 0.2235 41 1 7.9198 -1.4321 -1.2697 42 1 9.2580 0.4672 -2.1351 43 1 8.9293 1.3790 -0.6421 44 1 13.3818 0.0534 0.0861 45 1 4.0924 0.4690 -2.9996 46 1 3.4886 0.7044 -1.3004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269989861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:14 Heat of formation + Delta-G solvation = -37.840513 kcal Electronic energy + Delta-G solvation = -28318.987493 eV Core-core repulsion = 24404.544923 eV Total energy + Delta-G solvation = -3914.442570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.92730 -39.74693 -38.22708 -37.82616 -36.21554 -34.01233 -33.54728 -31.45930 -30.28249 -29.04769 -27.89557 -27.59540 -26.82420 -25.40818 -25.18277 -22.46264 -20.81656 -19.67752 -19.02036 -18.35883 -18.16200 -17.51447 -17.12004 -16.60216 -16.11092 -15.93216 -15.54963 -15.29904 -15.04618 -14.81264 -14.59695 -14.19218 -14.15996 -13.92820 -13.57164 -13.49644 -13.05401 -12.86584 -12.59166 -12.57248 -12.19821 -12.01685 -11.89709 -11.78133 -11.63186 -11.46922 -11.29920 -11.01535 -10.91999 -10.23936 -10.12289 -10.02787 -9.83043 -9.37690 -9.28437 -9.23125 -9.17687 -8.70155 -8.54956 -6.07434 -4.06697 1.68299 2.07100 2.44125 2.79723 3.04687 3.19473 3.34729 3.41709 3.51982 3.74677 3.92600 4.12956 4.23940 4.46920 4.48187 4.52185 4.63522 4.75630 4.83482 4.93067 5.04600 5.07409 5.19453 5.20623 5.26711 5.28067 5.29825 5.39128 5.43853 5.46882 5.65801 5.76677 5.77188 5.88737 6.00274 6.04831 6.30795 6.32770 6.52620 6.59623 6.90064 7.29266 7.36318 7.61304 7.66594 7.75711 8.39961 8.50531 8.94842 9.55421 11.05263 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.020563 B = 0.002982 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.354437 B = 9386.709018 C = 9899.758255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C -0.124 4.124 4 C 0.142 3.858 5 N -0.583 5.583 6 C 0.491 3.509 7 O -0.532 6.532 8 C 0.047 3.953 9 O -0.363 6.363 10 C 0.075 3.925 11 C 0.097 3.903 12 C 0.099 3.901 13 N -0.649 5.649 14 C 0.537 3.463 15 O -0.531 6.531 16 C -0.115 4.115 17 C 0.001 3.999 18 C -0.526 4.526 19 H 0.073 0.927 20 C 0.070 3.930 21 N -0.903 5.903 22 Si 0.877 3.123 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.261 1.261 26 C 0.079 3.921 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.024 0.976 43 H 0.019 0.981 44 H 0.264 0.736 45 H 0.087 0.913 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.113 -5.433 -2.978 25.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C -0.180 4.180 4 C 0.021 3.979 5 N -0.315 5.315 6 C 0.279 3.721 7 O -0.409 6.409 8 C -0.033 4.033 9 O -0.280 6.280 10 C -0.002 4.002 11 C 0.009 3.991 12 C -0.025 4.025 13 N -0.388 5.388 14 C 0.329 3.671 15 O -0.405 6.405 16 C -0.154 4.154 17 C -0.037 4.037 18 C -0.564 4.564 19 H 0.091 0.909 20 C -0.132 4.132 21 N -0.541 5.541 22 Si 0.704 3.296 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.185 1.185 26 C -0.044 4.044 27 H 0.114 0.886 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.149 0.851 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.142 0.858 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.043 0.957 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.155 -4.758 -3.240 25.806 hybrid contribution 0.269 0.747 -0.042 0.795 sum -24.886 -4.011 -3.281 25.420 Atomic orbital electron populations 1.23882 0.95254 1.02239 0.97676 1.21922 0.95761 0.95479 1.03054 1.21036 1.00216 0.94722 1.02062 1.20647 1.00403 0.94667 0.82190 1.47593 1.11184 1.59309 1.13447 1.21173 0.84581 0.77439 0.88872 1.90726 1.21649 1.55177 1.73309 1.22815 0.90367 0.98763 0.91346 1.88229 1.18971 1.76677 1.44132 1.22795 0.90012 0.99766 0.87645 1.22923 0.82334 0.97598 0.96211 1.23555 0.91934 0.89804 0.97253 1.50004 1.06675 1.26193 1.55961 1.21338 0.81834 0.84428 0.79461 1.90689 1.83383 1.23353 1.43101 1.21646 0.92718 1.00741 1.00331 1.19391 0.91125 0.95326 0.97827 1.21073 0.91433 1.09775 1.34087 0.90936 1.24965 0.95945 0.97317 0.94940 1.69906 1.00302 1.39765 1.44147 0.86806 0.77438 0.84146 0.81230 1.20225 1.21387 1.18518 1.24117 0.82945 0.95265 1.02121 0.88621 0.87562 0.91038 0.91481 0.91474 0.89202 0.88944 0.85104 0.89099 0.90698 0.85767 0.88560 0.88477 0.89650 0.89580 0.95745 0.96277 0.92661 0.89428 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 13.10 29.01 0.38 -0.98 16 2 C -0.16 -1.40 5.41 -101.07 -0.55 -1.94 16 3 C -0.12 -1.02 8.11 36.00 0.29 -0.73 16 4 C 0.14 1.15 5.06 -5.19 -0.03 1.12 16 5 N -0.58 -5.00 2.67 -163.99 -0.44 -5.44 16 6 C 0.49 4.70 7.53 -11.42 -0.09 4.61 16 7 O -0.53 -6.45 15.07 5.56 0.08 -6.36 16 8 C 0.05 0.34 6.94 35.80 0.25 0.59 16 9 O -0.36 -3.21 10.84 -35.23 -0.38 -3.59 16 10 C 0.08 0.59 5.99 37.04 0.22 0.81 16 11 C 0.10 0.82 1.51 -135.75 -0.20 0.62 16 12 C 0.10 0.84 7.61 -3.16 -0.02 0.82 16 13 N -0.65 -8.13 3.49 -180.43 -0.63 -8.76 16 14 C 0.54 9.37 8.06 -10.99 -0.09 9.28 16 15 O -0.53 -11.51 16.71 5.55 0.09 -11.42 16 16 C -0.11 -2.11 5.39 -27.88 -0.15 -2.26 16 17 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 18 C -0.53 -14.67 9.66 -34.44 -0.33 -15.00 16 19 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 20 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 21 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 22 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.26 -6.57 6.54 56.52 0.37 -6.21 16 26 C 0.08 0.85 7.97 -3.15 -0.03 0.82 16 27 H 0.10 0.76 8.05 -52.49 -0.42 0.34 16 28 H 0.11 1.04 7.24 -52.49 -0.38 0.66 16 29 H 0.07 0.63 6.54 -51.93 -0.34 0.29 16 30 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 31 H 0.07 0.56 7.70 -51.94 -0.40 0.16 16 32 H 0.09 0.75 7.51 -51.93 -0.39 0.36 16 33 H 0.09 0.62 5.19 -51.93 -0.27 0.35 16 34 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 37 H 0.12 1.07 7.97 -51.93 -0.41 0.66 16 38 H 0.10 0.70 5.53 -51.93 -0.29 0.41 16 39 H 0.10 0.70 8.09 -51.93 -0.42 0.28 16 40 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 43 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 46 H 0.11 1.09 2.74 -51.93 -0.14 0.95 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -35.23 366.47 -6.94 -42.17 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.76 Total: -2.54 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.53 Total: -0.37 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.29 Total: -40.96 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.21 Total: -21.37 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.23 -6.94 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269989861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.332 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds