Wall clock time and date at job start Fri Apr 10 2020 14:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50696 * 120.00065 * 2 1 4 4 C 1.50702 * 120.00009 * 179.97438 * 2 1 3 5 5 N 1.46502 * 109.47127 * 93.91120 * 4 2 1 6 6 C 1.34272 * 119.38286 * 279.49925 * 5 4 2 7 7 O 1.21281 * 118.96838 * 1.96152 * 6 5 4 8 8 C 1.50275 * 122.05910 * 181.93922 * 6 5 4 9 9 O 1.42821 * 110.49927 * 341.62507 * 8 6 5 10 10 C 1.43390 * 113.34306 * 51.29712 * 9 8 6 11 11 C 1.45915 * 119.38022 * 99.47147 * 5 4 2 12 12 C 1.53484 * 113.80913 * 32.94724 * 11 5 4 13 13 N 1.47666 * 85.99157 * 222.04600 * 12 11 5 14 14 C 1.34772 * 134.46119 * 204.29806 * 13 12 11 15 15 O 1.21285 * 120.00089 * 180.02562 * 14 13 12 16 16 C 1.50700 * 120.00133 * 0.02964 * 14 13 12 17 17 C 1.52996 * 109.47329 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47329 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99476 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00250 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00014 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99854 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47141 * 89.99840 * 22 20 18 24 24 H 1.48496 * 109.47073 * 209.99862 * 22 20 18 25 25 H 1.48506 * 109.47065 * 330.00067 * 22 20 18 26 26 C 1.47666 * 91.08047 * 24.32117 * 13 12 11 27 27 H 1.07992 * 120.00264 * 5.19835 * 1 2 3 28 28 H 1.08001 * 119.99546 * 185.20426 * 1 2 3 29 29 H 1.09005 * 109.46927 * 270.00276 * 3 2 1 30 30 H 1.09004 * 109.46890 * 29.99541 * 3 2 1 31 31 H 1.08987 * 109.47384 * 149.99970 * 3 2 1 32 32 H 1.09001 * 109.47025 * 333.91613 * 4 2 1 33 33 H 1.08994 * 109.47241 * 213.90864 * 4 2 1 34 34 H 1.08998 * 109.27291 * 221.35921 * 8 6 5 35 35 H 1.09001 * 109.26663 * 101.88591 * 8 6 5 36 36 H 1.08997 * 109.70583 * 54.07445 * 10 9 8 37 37 H 1.09004 * 109.70394 * 174.69601 * 10 9 8 38 38 H 1.09006 * 113.78880 * 336.31734 * 12 11 5 39 39 H 1.09000 * 113.78739 * 107.77577 * 12 11 5 40 40 H 1.08997 * 109.47071 * 300.00213 * 16 14 13 41 41 H 1.08999 * 109.46421 * 59.99963 * 16 14 13 42 42 H 1.09005 * 109.47305 * 300.00535 * 17 16 14 43 43 H 1.09000 * 109.46786 * 60.00039 * 17 16 14 44 44 H 0.97004 * 119.99813 * 179.97438 * 21 20 18 45 45 H 1.09006 * 113.79436 * 221.41795 * 26 13 12 46 46 H 1.08997 * 113.79322 * 89.94768 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.3893 -1.6815 -1.3773 6 6 1.4516 -2.2667 -2.1396 7 8 0.3427 -2.4375 -1.6790 8 6 1.7329 -2.7160 -3.5457 9 8 2.9032 -2.0724 -4.0517 10 6 4.0351 -2.1832 -3.1785 11 6 3.7266 -1.4130 -1.8956 12 6 4.8335 -1.5156 -0.8373 13 7 5.3955 -0.2987 -1.4568 14 6 6.6263 0.2468 -1.5186 15 8 6.7989 1.2881 -2.1162 16 6 7.7883 -0.4368 -0.8452 17 6 9.0606 0.3836 -1.0663 18 6 10.2225 -0.2998 -0.3923 19 1 10.0688 -1.2268 0.1400 20 6 11.4818 0.2579 -0.4563 21 7 12.4958 -0.3388 0.1314 22 14 11.7477 1.8609 -1.3778 23 1 11.5600 3.0034 -0.4479 24 1 13.1264 1.8924 -1.9286 25 1 10.7681 1.9613 -2.4894 26 6 4.0684 0.0811 -1.9811 27 1 -0.5400 0.9314 -0.0847 28 1 -0.5399 -0.9315 0.0848 29 1 2.2452 1.6197 -1.0277 30 1 1.4744 2.0647 0.5138 31 1 3.0159 1.1748 0.5138 32 1 1.4459 -2.0811 0.4528 33 1 2.9838 -1.1931 0.5738 34 1 0.8824 -2.4665 -4.1801 35 1 1.8835 -3.7955 -3.5550 36 1 4.2166 -3.2319 -2.9432 37 1 4.9146 -1.7565 -3.6608 38 1 4.4811 -1.3668 0.1834 39 1 5.4658 -2.3968 -0.9464 40 1 7.5908 -0.5208 0.2235 41 1 7.9198 -1.4321 -1.2697 42 1 9.2580 0.4672 -2.1351 43 1 8.9293 1.3790 -0.6421 44 1 13.3818 0.0534 0.0861 45 1 4.0924 0.4690 -2.9996 46 1 3.4886 0.7044 -1.3004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269989861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:11 Heat of formation + Delta-G solvation = -62.542569 kcal Electronic energy + Delta-G solvation = -28320.058655 eV Core-core repulsion = 24404.544923 eV Total energy + Delta-G solvation = -3915.513732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -42.70740 -40.74750 -39.27815 -38.60330 -37.00391 -35.54275 -34.78323 -33.34512 -31.25182 -29.77024 -28.76799 -28.47622 -27.80438 -26.76218 -25.87112 -23.57874 -22.41732 -20.35850 -20.12856 -19.28508 -18.96420 -18.84242 -18.13333 -17.70011 -17.19311 -16.81390 -16.45922 -16.25061 -16.22512 -15.95652 -15.69758 -15.32141 -14.96932 -14.85539 -14.74217 -14.42769 -14.23841 -14.10892 -14.05489 -13.57074 -13.37271 -12.93603 -12.84632 -12.80250 -12.60585 -12.46398 -12.32611 -12.11744 -12.03662 -11.96377 -11.76829 -11.57869 -11.38941 -10.90083 -10.77278 -10.63082 -9.99764 -9.92956 -9.72432 -8.30680 -6.33213 0.97665 1.33571 1.35588 1.36280 1.50523 1.57402 1.60947 2.08103 2.35459 2.55829 3.05415 3.08699 3.19456 3.35807 3.47962 3.78256 3.84442 3.88328 4.08267 4.17401 4.31288 4.36530 4.37919 4.44413 4.45757 4.51259 4.56165 4.57100 4.62473 4.64557 4.73443 4.74448 4.79795 4.97390 5.02392 5.08567 5.20439 5.35999 5.44705 5.61407 5.64070 5.70005 5.84828 6.19927 6.24305 6.55983 6.73530 6.89953 7.15067 7.32369 8.84785 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.020563 B = 0.002982 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.354437 B = 9386.709018 C = 9899.758255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.164 4.164 3 C -0.122 4.122 4 C 0.139 3.861 5 N -0.578 5.578 6 C 0.488 3.512 7 O -0.560 6.560 8 C 0.048 3.952 9 O -0.376 6.376 10 C 0.072 3.928 11 C 0.110 3.890 12 C 0.099 3.901 13 N -0.643 5.643 14 C 0.542 3.458 15 O -0.584 6.584 16 C -0.107 4.107 17 C 0.004 3.996 18 C -0.526 4.526 19 H 0.053 0.947 20 C 0.015 3.985 21 N -0.943 5.943 22 Si 0.935 3.065 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.261 1.261 26 C 0.073 3.927 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.010 0.990 43 H 0.006 0.994 44 H 0.267 0.733 45 H 0.074 0.926 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.337 -6.155 -3.130 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C -0.178 4.178 4 C 0.018 3.982 5 N -0.310 5.310 6 C 0.277 3.723 7 O -0.439 6.439 8 C -0.031 4.031 9 O -0.294 6.294 10 C -0.005 4.005 11 C 0.023 3.977 12 C -0.023 4.023 13 N -0.379 5.379 14 C 0.333 3.667 15 O -0.463 6.463 16 C -0.147 4.147 17 C -0.034 4.034 18 C -0.564 4.564 19 H 0.071 0.929 20 C -0.183 4.183 21 N -0.583 5.583 22 Si 0.760 3.240 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.186 1.186 26 C -0.050 4.050 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.158 0.842 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.029 0.971 43 H 0.025 0.975 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -26.422 -5.520 -3.377 27.203 hybrid contribution 0.535 0.901 0.044 1.049 sum -25.888 -4.618 -3.333 26.507 Atomic orbital electron populations 1.23895 0.95499 1.02129 0.98046 1.22035 0.95776 0.95941 1.02715 1.21009 1.00338 0.94740 1.01699 1.20742 1.01103 0.94257 0.82135 1.47581 1.11001 1.58836 1.13556 1.21608 0.84139 0.76929 0.89598 1.90723 1.22747 1.56427 1.74039 1.22941 0.90204 1.00007 0.89958 1.88223 1.19506 1.77163 1.44496 1.22890 0.89526 1.01138 0.86907 1.22748 0.82376 0.95843 0.96728 1.23906 0.91613 0.88792 0.98031 1.49796 1.05873 1.27077 1.55164 1.20905 0.83043 0.83695 0.79019 1.90667 1.84513 1.25589 1.45576 1.21436 0.90870 1.00596 1.01762 1.19238 0.92695 0.95282 0.96162 1.21401 0.92654 1.09056 1.33264 0.92874 1.25764 0.96015 1.00511 0.95991 1.70015 1.00895 1.41519 1.45915 0.85883 0.77553 0.80531 0.80069 1.19536 1.20465 1.18559 1.24314 0.81830 0.97293 1.01591 0.87929 0.88578 0.91711 0.90775 0.91332 0.89436 0.87293 0.84243 0.86601 0.87955 0.86593 0.86549 0.86081 0.88031 0.87613 0.97143 0.97527 0.92409 0.90711 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 13.10 67.77 0.89 -1.77 16 2 C -0.16 -2.58 5.41 -16.50 -0.09 -2.67 16 3 C -0.12 -1.82 8.11 71.23 0.58 -1.24 16 4 C 0.14 1.93 5.06 85.63 0.43 2.37 16 5 N -0.58 -8.52 2.67 -791.43 -2.12 -10.64 16 6 C 0.49 8.32 7.53 87.60 0.66 8.98 16 7 O -0.56 -12.83 15.07 -3.03 -0.05 -12.87 16 8 C 0.05 0.58 6.94 71.10 0.49 1.08 16 9 O -0.38 -5.78 10.84 -148.98 -1.61 -7.39 16 10 C 0.07 0.94 5.99 71.91 0.43 1.37 16 11 C 0.11 1.58 1.51 5.38 0.01 1.59 16 12 C 0.10 1.34 7.61 86.31 0.66 1.99 16 13 N -0.64 -14.73 3.49 -843.13 -2.94 -17.67 16 14 C 0.54 18.19 8.06 87.66 0.71 18.90 16 15 O -0.58 -25.31 16.71 -3.04 -0.05 -25.36 16 16 C -0.11 -3.77 5.39 29.85 0.16 -3.61 16 17 C 0.00 0.20 3.33 29.85 0.10 0.30 16 18 C -0.53 -29.37 9.66 25.60 0.25 -29.12 16 19 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 20 C 0.01 0.87 5.47 84.65 0.46 1.33 16 21 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 22 Si 0.93 45.98 27.47 68.60 1.88 47.86 16 23 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 25 H -0.26 -12.77 6.54 99.48 0.65 -12.12 16 26 C 0.07 1.44 7.97 86.32 0.69 2.13 16 27 H 0.10 1.54 8.05 -2.91 -0.02 1.51 16 28 H 0.10 1.84 7.24 -2.91 -0.02 1.82 16 29 H 0.06 1.07 6.54 -2.38 -0.02 1.05 16 30 H 0.07 1.00 8.06 -2.38 -0.02 0.98 16 31 H 0.07 1.00 7.70 -2.39 -0.02 0.99 16 32 H 0.09 1.31 7.51 -2.39 -0.02 1.29 16 33 H 0.11 1.12 5.19 -2.39 -0.01 1.10 16 34 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.80 8.13 -2.39 -0.02 0.78 16 37 H 0.12 1.75 7.97 -2.39 -0.02 1.73 16 38 H 0.12 1.19 5.53 -2.38 -0.01 1.18 16 39 H 0.12 1.17 8.09 -2.39 -0.02 1.15 16 40 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.01 0.52 7.16 -2.38 -0.02 0.50 16 43 H 0.01 0.32 7.53 -2.39 -0.02 0.30 16 44 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.07 1.72 8.09 -2.38 -0.02 1.70 16 46 H 0.11 2.15 2.74 -2.39 -0.01 2.14 16 Total: -1.00 -77.03 366.47 2.77 -74.25 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.93 Total: 7.85 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 6.42 Total: 1.62 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -4.76 Total: -85.97 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -1.71 Total: -45.62 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Total: -77.03 2.77 -74.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269989861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.710 kcal (2) G-P(sol) polarization free energy of solvation -77.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds