Wall clock time and date at job start Fri Apr 10 2020 14:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.50912 * 2 1 4 4 C 1.53094 * 109.50767 * 120.13555 * 2 1 3 5 5 N 1.47016 * 109.25686 * 176.78357 * 4 2 1 6 6 C 1.46907 * 110.99968 * 177.60773 * 5 4 2 7 7 C 1.50711 * 109.46842 * 293.62808 * 6 5 4 8 8 O 1.21280 * 119.99975 * 353.88738 * 7 6 5 9 9 N 1.34776 * 119.99814 * 173.88613 * 7 6 5 10 10 C 1.46495 * 119.99756 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.46997 * 89.99939 * 10 9 7 12 12 H 1.07998 * 119.99948 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99738 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99961 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00482 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47269 * 89.99342 * 15 13 11 17 17 H 1.48495 * 109.47384 * 209.99962 * 15 13 11 18 18 H 1.48503 * 109.46511 * 329.99789 * 15 13 11 19 19 C 1.46504 * 120.00002 * 359.97438 * 9 7 6 20 20 C 1.50701 * 109.46867 * 90.00208 * 19 9 7 21 21 C 1.34514 * 125.79428 * 89.99715 * 20 19 9 22 22 C 1.41373 * 106.84478 * 179.97438 * 21 20 19 23 23 C 1.34515 * 106.83857 * 359.97438 * 22 21 20 24 24 O 1.34299 * 108.42071 * 359.73816 * 23 22 21 25 25 C 1.47018 * 110.75296 * 301.37723 * 5 4 2 26 26 C 1.53094 * 109.25207 * 58.61906 * 25 5 4 27 27 O 1.43020 * 109.50291 * 239.91348 * 2 1 3 28 28 H 1.09005 * 109.46801 * 180.08382 * 1 2 3 29 29 H 1.08993 * 109.47000 * 300.08245 * 1 2 3 30 30 H 1.08998 * 109.47250 * 60.08303 * 1 2 3 31 31 H 1.09005 * 109.50554 * 296.71606 * 4 2 1 32 32 H 1.09001 * 109.51266 * 56.84554 * 4 2 1 33 33 H 1.08996 * 109.47449 * 53.62671 * 6 5 4 34 34 H 1.08996 * 109.47272 * 173.63382 * 6 5 4 35 35 H 1.08995 * 109.47247 * 210.00222 * 10 9 7 36 36 H 1.08998 * 109.47270 * 330.00263 * 10 9 7 37 37 H 0.96999 * 120.00565 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.46886 * 209.99810 * 19 9 7 39 39 H 1.08998 * 109.46975 * 330.00092 * 19 9 7 40 40 H 1.08005 * 126.56863 * 359.96679 * 21 20 19 41 41 H 1.07999 * 126.58117 * 179.97438 * 22 21 20 42 42 H 1.08009 * 125.78972 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.50663 * 178.55456 * 25 5 4 44 44 H 1.08995 * 109.50736 * 298.64259 * 25 5 4 45 45 H 1.09002 * 109.50546 * 183.21569 * 26 25 5 46 46 H 1.09000 * 109.50876 * 63.08806 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0412 -0.7245 1.2480 5 7 3.5093 -0.7890 1.2040 6 6 4.0447 -1.4280 2.4136 7 6 3.7668 -0.5531 3.6089 8 8 3.2809 0.5474 3.4549 9 7 4.0584 -0.9936 4.8488 10 6 3.7888 -0.1429 6.0105 11 6 2.3945 -0.4104 6.5163 12 1 1.7718 -1.1414 6.0220 13 6 1.9144 0.2772 7.6106 14 7 0.6975 0.0441 8.0517 15 14 2.9918 1.5409 8.4661 16 1 2.7785 2.8737 7.8468 17 1 2.6354 1.6015 9.9064 18 1 4.4180 1.1520 8.3250 19 6 4.6449 -2.3232 5.0347 20 6 6.1477 -2.2198 4.9911 21 6 6.9525 -2.0060 6.0475 22 6 8.2774 -1.9821 5.5548 23 6 8.2031 -2.1834 4.2269 24 8 6.9111 -2.3328 3.8920 25 6 3.9640 -1.4885 -0.0065 26 6 3.4334 -0.7564 -1.2420 27 8 2.0075 -0.6758 -1.1665 28 1 -0.3633 -1.0277 0.0015 29 1 -0.3633 0.5151 0.8892 30 1 -0.3634 0.5125 -0.8907 31 1 1.7274 -0.1804 2.1389 32 1 1.6332 -1.7349 1.2753 33 1 3.5670 -2.3976 2.5542 34 1 5.1207 -1.5652 2.3062 35 1 4.5095 -0.3639 6.7978 36 1 3.8758 0.9045 5.7219 37 1 0.3595 0.5281 8.8214 38 1 4.3361 -2.7247 5.9998 39 1 4.3030 -2.9855 4.2394 40 1 6.6453 -1.8771 7.0748 41 1 9.1767 -1.8313 6.1336 42 1 9.0407 -2.2224 3.5461 43 1 5.0536 -1.5021 -0.0315 44 1 3.5873 -2.5113 0.0010 45 1 3.7200 -1.3033 -2.1402 46 1 3.8534 0.2489 -1.2777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032865548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:37 Heat of formation + Delta-G solvation = -44.000046 kcal Electronic energy + Delta-G solvation = -28431.561713 eV Core-core repulsion = 24516.852045 eV Total energy + Delta-G solvation = -3914.709668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.45366 -39.94241 -38.77657 -35.71901 -35.05413 -32.89838 -32.72498 -32.67387 -30.41428 -29.67923 -28.19754 -26.96624 -25.54971 -24.59610 -22.73307 -21.86032 -21.58136 -20.62109 -20.32200 -18.65149 -17.42279 -16.92128 -16.72396 -16.31190 -16.27406 -15.67831 -15.58673 -15.29415 -14.84003 -14.74285 -14.24532 -14.04337 -13.72536 -13.55039 -12.93611 -12.76042 -12.68851 -12.64438 -12.61510 -12.34147 -12.30686 -11.92520 -11.76836 -11.74558 -11.55816 -11.20916 -11.13282 -10.90572 -10.57566 -10.46235 -10.20502 -9.83353 -9.66266 -9.60217 -9.04027 -8.63210 -8.43423 -8.25212 -7.90174 -6.13267 -4.12680 1.77340 2.69443 3.00380 3.26485 3.31368 3.33092 3.35321 3.51002 3.78072 4.07667 4.36035 4.76188 4.81736 4.92584 4.95589 5.05824 5.11210 5.12993 5.18271 5.23955 5.26920 5.30096 5.41186 5.47385 5.54815 5.59738 5.66861 5.75369 5.78938 5.86347 5.88285 6.04638 6.08304 6.11440 6.17563 6.23320 6.57483 6.60810 6.85392 6.95866 7.00982 7.16194 7.23921 7.27938 7.55247 8.09907 8.41082 8.86520 8.91743 9.46916 10.99781 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009029 B = 0.005104 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.355947 B = 5484.379175 C = 8098.298694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.092 3.908 3 H 0.069 0.931 4 C 0.021 3.979 5 N -0.519 5.519 6 C 0.036 3.964 7 C 0.513 3.487 8 O -0.514 6.514 9 N -0.591 5.591 10 C 0.218 3.782 11 C -0.530 4.530 12 H 0.075 0.925 13 C 0.075 3.925 14 N -0.896 5.896 15 Si 0.873 3.127 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.266 1.266 19 C 0.190 3.810 20 C -0.027 4.027 21 C -0.195 4.195 22 C -0.213 4.213 23 C -0.048 4.048 24 O -0.177 6.177 25 C 0.018 3.982 26 C 0.068 3.932 27 O -0.387 6.387 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.037 0.963 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.031 0.969 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.199 0.801 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.095 0.905 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.209 -6.606 -13.141 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.035 3.965 3 H 0.087 0.913 4 C -0.107 4.107 5 N -0.243 5.243 6 C -0.095 4.095 7 C 0.299 3.701 8 O -0.388 6.388 9 N -0.323 5.323 10 C 0.098 3.902 11 C -0.569 4.569 12 H 0.093 0.907 13 C -0.128 4.128 14 N -0.534 5.534 15 Si 0.700 3.300 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.190 1.190 19 C 0.066 3.934 20 C -0.078 4.078 21 C -0.215 4.215 22 C -0.233 4.233 23 C -0.116 4.116 24 O -0.073 6.073 25 C -0.110 4.110 26 C -0.010 4.010 27 O -0.307 6.307 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.167 0.833 41 H 0.163 0.837 42 H 0.215 0.785 43 H 0.103 0.897 44 H 0.059 0.941 45 H 0.113 0.887 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.718 -5.578 -13.515 18.128 hybrid contribution 0.776 -0.125 1.163 1.403 sum 11.494 -5.703 -12.352 17.810 Atomic orbital electron populations 1.21745 0.92770 1.02838 1.02776 1.22153 0.94801 0.95803 0.83776 0.91321 1.22978 0.86784 1.00080 1.00867 1.61841 1.09889 1.51981 1.00633 1.22099 1.01834 0.95704 0.89841 1.20202 0.78702 0.87560 0.83591 1.90658 1.42275 1.20986 1.84922 1.48000 1.60586 1.16400 1.07333 1.19688 0.97144 0.90956 0.82449 1.21291 0.97807 1.24272 1.13490 0.90666 1.24822 0.94869 0.96406 0.96657 1.69888 1.15967 1.42092 1.25438 0.86890 0.81300 0.82782 0.78995 1.19874 1.21041 1.19026 1.19911 0.82029 0.86353 1.05134 1.23307 0.94719 1.05568 0.84238 1.21695 0.92461 1.07032 1.00339 1.21825 0.98353 1.08170 0.94918 1.23952 0.84319 1.06573 0.96712 1.83991 1.17251 1.70343 1.35763 1.22805 1.00995 0.96253 0.90974 1.22578 0.81381 1.00280 0.96728 1.87944 1.20752 1.78639 1.43333 0.92026 0.90458 0.91794 0.87471 0.94485 0.92354 0.87891 0.95155 0.94432 0.92505 0.86295 0.89669 0.83310 0.83725 0.78470 0.89743 0.94068 0.88667 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.57 37.16 0.36 -1.42 16 2 C 0.09 1.32 3.43 -26.68 -0.09 1.23 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.02 0.33 4.58 -3.71 -0.02 0.31 16 5 N -0.52 -8.02 4.42 -235.74 -1.04 -9.06 16 6 C 0.04 0.56 4.18 -4.97 -0.02 0.54 16 7 C 0.51 10.35 7.25 -10.98 -0.08 10.27 16 8 O -0.51 -12.41 14.25 5.56 0.08 -12.33 16 9 N -0.59 -11.78 2.44 -176.43 -0.43 -12.21 16 10 C 0.22 5.17 4.23 -5.19 -0.02 5.15 16 11 C -0.53 -14.65 9.94 -34.44 -0.34 -14.99 16 12 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 13 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 14 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 15 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 19 C 0.19 2.94 5.76 -5.19 -0.03 2.91 16 20 C -0.03 -0.40 6.90 -35.62 -0.25 -0.64 16 21 C -0.20 -2.80 10.81 -39.71 -0.43 -3.23 16 22 C -0.21 -2.61 10.91 -39.71 -0.43 -3.04 16 23 C -0.05 -0.54 12.09 29.42 0.36 -0.18 16 24 O -0.18 -2.41 9.78 5.73 0.06 -2.35 16 25 C 0.02 0.22 5.65 -3.71 -0.02 0.19 16 26 C 0.07 0.77 7.01 37.21 0.26 1.03 16 27 O -0.39 -5.37 10.47 -35.23 -0.37 -5.74 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.11 2.06 6.10 -51.93 -0.32 1.74 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.82 7.04 -51.93 -0.37 0.46 16 34 H 0.10 1.46 7.15 -51.93 -0.37 1.09 16 35 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 36 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.12 1.79 8.07 -51.93 -0.42 1.37 16 39 H 0.09 1.10 6.27 -51.93 -0.33 0.78 16 40 H 0.15 2.08 8.06 -52.48 -0.42 1.65 16 41 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.20 1.41 8.06 -52.48 -0.42 0.99 16 43 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 44 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -33.92 373.69 -8.01 -41.93 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.19 Total: 3.60 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.86 Total: 0.16 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.70 Total: -47.46 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.23 Total: -20.42 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.92 -8.01 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032865548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.067 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds