Wall clock time and date at job start Fri Apr 10 2020 14:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.50912 * 2 1 4 4 C 1.53094 * 109.50767 * 120.13555 * 2 1 3 5 5 N 1.47016 * 109.25686 * 176.78357 * 4 2 1 6 6 C 1.46907 * 110.99968 * 177.60773 * 5 4 2 7 7 C 1.50711 * 109.46842 * 293.62808 * 6 5 4 8 8 O 1.21280 * 119.99975 * 353.88738 * 7 6 5 9 9 N 1.34776 * 119.99814 * 173.88613 * 7 6 5 10 10 C 1.46495 * 119.99756 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.46997 * 89.99939 * 10 9 7 12 12 H 1.07998 * 119.99948 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99738 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99961 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00482 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47269 * 89.99342 * 15 13 11 17 17 H 1.48495 * 109.47384 * 209.99962 * 15 13 11 18 18 H 1.48503 * 109.46511 * 329.99789 * 15 13 11 19 19 C 1.46504 * 120.00002 * 359.97438 * 9 7 6 20 20 C 1.50701 * 109.46867 * 90.00208 * 19 9 7 21 21 C 1.34514 * 125.79428 * 89.99715 * 20 19 9 22 22 C 1.41373 * 106.84478 * 179.97438 * 21 20 19 23 23 C 1.34515 * 106.83857 * 359.97438 * 22 21 20 24 24 O 1.34299 * 108.42071 * 359.73816 * 23 22 21 25 25 C 1.47018 * 110.75296 * 301.37723 * 5 4 2 26 26 C 1.53094 * 109.25207 * 58.61906 * 25 5 4 27 27 O 1.43020 * 109.50291 * 239.91348 * 2 1 3 28 28 H 1.09005 * 109.46801 * 180.08382 * 1 2 3 29 29 H 1.08993 * 109.47000 * 300.08245 * 1 2 3 30 30 H 1.08998 * 109.47250 * 60.08303 * 1 2 3 31 31 H 1.09005 * 109.50554 * 296.71606 * 4 2 1 32 32 H 1.09001 * 109.51266 * 56.84554 * 4 2 1 33 33 H 1.08996 * 109.47449 * 53.62671 * 6 5 4 34 34 H 1.08996 * 109.47272 * 173.63382 * 6 5 4 35 35 H 1.08995 * 109.47247 * 210.00222 * 10 9 7 36 36 H 1.08998 * 109.47270 * 330.00263 * 10 9 7 37 37 H 0.96999 * 120.00565 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.46886 * 209.99810 * 19 9 7 39 39 H 1.08998 * 109.46975 * 330.00092 * 19 9 7 40 40 H 1.08005 * 126.56863 * 359.96679 * 21 20 19 41 41 H 1.07999 * 126.58117 * 179.97438 * 22 21 20 42 42 H 1.08009 * 125.78972 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.50663 * 178.55456 * 25 5 4 44 44 H 1.08995 * 109.50736 * 298.64259 * 25 5 4 45 45 H 1.09002 * 109.50546 * 183.21569 * 26 25 5 46 46 H 1.09000 * 109.50876 * 63.08806 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0412 -0.7245 1.2480 5 7 3.5093 -0.7890 1.2040 6 6 4.0447 -1.4280 2.4136 7 6 3.7668 -0.5531 3.6089 8 8 3.2809 0.5474 3.4549 9 7 4.0584 -0.9936 4.8488 10 6 3.7888 -0.1429 6.0105 11 6 2.3945 -0.4104 6.5163 12 1 1.7718 -1.1414 6.0220 13 6 1.9144 0.2772 7.6106 14 7 0.6975 0.0441 8.0517 15 14 2.9918 1.5409 8.4661 16 1 2.7785 2.8737 7.8468 17 1 2.6354 1.6015 9.9064 18 1 4.4180 1.1520 8.3250 19 6 4.6449 -2.3232 5.0347 20 6 6.1477 -2.2198 4.9911 21 6 6.9525 -2.0060 6.0475 22 6 8.2774 -1.9821 5.5548 23 6 8.2031 -2.1834 4.2269 24 8 6.9111 -2.3328 3.8920 25 6 3.9640 -1.4885 -0.0065 26 6 3.4334 -0.7564 -1.2420 27 8 2.0075 -0.6758 -1.1665 28 1 -0.3633 -1.0277 0.0015 29 1 -0.3633 0.5151 0.8892 30 1 -0.3634 0.5125 -0.8907 31 1 1.7274 -0.1804 2.1389 32 1 1.6332 -1.7349 1.2753 33 1 3.5670 -2.3976 2.5542 34 1 5.1207 -1.5652 2.3062 35 1 4.5095 -0.3639 6.7978 36 1 3.8758 0.9045 5.7219 37 1 0.3595 0.5281 8.8214 38 1 4.3361 -2.7247 5.9998 39 1 4.3030 -2.9855 4.2394 40 1 6.6453 -1.8771 7.0748 41 1 9.1767 -1.8313 6.1336 42 1 9.0407 -2.2224 3.5461 43 1 5.0536 -1.5021 -0.0315 44 1 3.5873 -2.5113 0.0010 45 1 3.7200 -1.3033 -2.1402 46 1 3.8534 0.2489 -1.2777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032865548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:36 Heat of formation + Delta-G solvation = -68.087274 kcal Electronic energy + Delta-G solvation = -28432.606214 eV Core-core repulsion = 24516.852045 eV Total energy + Delta-G solvation = -3915.754168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.44738 -41.24527 -40.12211 -37.12864 -36.43609 -34.82008 -33.86046 -33.76125 -31.87099 -30.92481 -29.62808 -28.25897 -26.80005 -25.92179 -24.15904 -23.28763 -22.60433 -21.69247 -21.42428 -20.09982 -19.19385 -18.38124 -18.06371 -17.56411 -17.40007 -16.93008 -16.80503 -16.56961 -16.24737 -15.89488 -15.70093 -15.38094 -15.06604 -14.79373 -14.55271 -14.21783 -14.00039 -13.74956 -13.63833 -13.57945 -13.53327 -13.42789 -13.19326 -12.96241 -12.79211 -12.66549 -12.49827 -12.30565 -12.15076 -12.07299 -11.76188 -11.50393 -10.90229 -10.83611 -10.80184 -10.49970 -9.66746 -9.43000 -9.37958 -8.34342 -6.38962 0.74824 1.31342 1.35220 1.42954 1.65892 1.70506 2.09788 2.21752 2.29623 2.72205 2.86416 3.00156 3.52400 3.76390 3.83810 3.90910 4.01746 4.02907 4.10705 4.17314 4.21280 4.26764 4.33430 4.39258 4.48346 4.56505 4.58827 4.68363 4.74026 4.76605 4.84167 4.89908 4.93594 4.94966 5.03875 5.05835 5.19921 5.21936 5.42498 5.49026 5.63678 5.72767 5.92016 6.19358 6.21333 6.23646 6.55872 6.62552 7.20585 7.35559 8.82119 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009029 B = 0.005104 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.355947 B = 5484.379175 C = 8098.298694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.097 3.903 3 H 0.055 0.945 4 C 0.027 3.973 5 N -0.537 5.537 6 C 0.051 3.949 7 C 0.503 3.497 8 O -0.565 6.565 9 N -0.596 5.596 10 C 0.230 3.770 11 C -0.532 4.532 12 H 0.035 0.965 13 C 0.018 3.982 14 N -0.942 5.942 15 Si 0.939 3.061 16 H -0.279 1.279 17 H -0.274 1.274 18 H -0.241 1.241 19 C 0.189 3.811 20 C -0.046 4.046 21 C -0.207 4.207 22 C -0.229 4.229 23 C -0.032 4.032 24 O -0.183 6.183 25 C 0.019 3.981 26 C 0.062 3.938 27 O -0.394 6.394 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.047 0.953 36 H 0.015 0.985 37 H 0.268 0.732 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.145 0.855 41 H 0.167 0.833 42 H 0.242 0.758 43 H 0.108 0.892 44 H 0.050 0.950 45 H 0.129 0.871 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.343 -7.526 -14.587 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.039 3.961 3 H 0.073 0.927 4 C -0.102 4.102 5 N -0.263 5.263 6 C -0.079 4.079 7 C 0.292 3.708 8 O -0.443 6.443 9 N -0.328 5.328 10 C 0.108 3.892 11 C -0.570 4.570 12 H 0.053 0.947 13 C -0.181 4.181 14 N -0.582 5.582 15 Si 0.763 3.237 16 H -0.205 1.205 17 H -0.199 1.199 18 H -0.164 1.164 19 C 0.066 3.934 20 C -0.097 4.097 21 C -0.228 4.228 22 C -0.248 4.248 23 C -0.099 4.099 24 O -0.079 6.079 25 C -0.108 4.108 26 C -0.015 4.015 27 O -0.314 6.314 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.163 0.837 41 H 0.185 0.815 42 H 0.258 0.742 43 H 0.126 0.874 44 H 0.068 0.932 45 H 0.147 0.853 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.889 -6.554 -14.975 21.450 hybrid contribution -0.157 0.092 1.546 1.557 sum 13.732 -6.461 -13.429 20.265 Atomic orbital electron populations 1.21728 0.91668 1.03238 1.03182 1.22047 0.95754 0.94862 0.83442 0.92652 1.22804 0.87719 0.99644 0.99999 1.61816 1.09278 1.53340 1.01825 1.21999 1.03139 0.94905 0.87884 1.21114 0.77434 0.87532 0.84725 1.90629 1.44481 1.23418 1.85779 1.48035 1.60714 1.17660 1.06363 1.19284 0.95052 0.90631 0.84204 1.21487 0.99307 1.23091 1.13135 0.94691 1.25719 0.96215 0.98570 0.97564 1.70030 1.18034 1.43712 1.26385 0.85838 0.80671 0.79284 0.77935 1.20455 1.19923 1.16403 1.20021 0.83027 0.84244 1.06061 1.22909 0.94146 1.07760 0.84930 1.21931 0.93901 1.06654 1.00275 1.22137 0.98155 1.08805 0.95726 1.24840 0.84169 1.03662 0.97271 1.83972 1.18198 1.70458 1.35278 1.22942 1.02416 0.96251 0.89224 1.22851 0.79990 1.00731 0.97900 1.87936 1.22427 1.78394 1.42604 0.91597 0.91180 0.90267 0.91564 0.94302 0.90636 0.85735 0.93488 0.96674 0.92269 0.86586 0.87163 0.83720 0.81539 0.74181 0.87363 0.93201 0.85287 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.57 71.98 0.69 -2.82 16 2 C 0.10 2.79 3.43 30.63 0.10 2.89 16 3 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.03 0.87 4.58 86.31 0.40 1.27 16 5 N -0.54 -16.14 4.42 -899.75 -3.98 -20.12 16 6 C 0.05 1.53 4.18 85.56 0.36 1.89 16 7 C 0.50 20.68 7.25 87.66 0.64 21.31 16 8 O -0.56 -28.55 14.25 -3.03 -0.04 -28.59 16 9 N -0.60 -24.07 2.44 -830.50 -2.03 -26.10 16 10 C 0.23 11.14 4.23 85.64 0.36 11.50 16 11 C -0.53 -30.59 9.94 25.60 0.25 -30.33 16 12 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 13 C 0.02 1.04 5.47 84.65 0.46 1.50 16 14 N -0.94 -58.69 13.96 21.45 0.30 -58.40 16 15 Si 0.94 44.30 27.47 68.60 1.88 46.19 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 19 C 0.19 5.72 5.76 85.63 0.49 6.22 16 20 C -0.05 -1.29 6.90 24.83 0.17 -1.11 16 21 C -0.21 -5.60 10.81 22.19 0.24 -5.36 16 22 C -0.23 -4.89 10.91 22.19 0.24 -4.65 16 23 C -0.03 -0.60 12.09 66.97 0.81 0.21 16 24 O -0.18 -4.39 9.78 -2.43 -0.02 -4.42 16 25 C 0.02 0.40 5.65 86.31 0.49 0.89 16 26 C 0.06 1.25 7.01 72.01 0.50 1.75 16 27 O -0.39 -10.32 10.47 -148.98 -1.56 -11.88 16 28 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.07 2.72 6.10 -2.38 -0.01 2.71 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 2.00 7.04 -2.39 -0.02 1.98 16 34 H 0.12 3.18 7.15 -2.39 -0.02 3.17 16 35 H 0.05 2.11 7.13 -2.39 -0.02 2.10 16 36 H 0.02 0.80 6.85 -2.39 -0.02 0.79 16 37 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.12 3.52 8.07 -2.39 -0.02 3.50 16 39 H 0.11 2.71 6.27 -2.39 -0.01 2.69 16 40 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 41 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.24 2.11 8.06 -2.91 -0.02 2.09 16 43 H 0.11 1.78 8.09 -2.39 -0.02 1.76 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -77.64 373.69 1.67 -75.97 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.91 Total: 22.18 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 6.21 Total: 5.15 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -5.70 Total: -104.61 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.63 Total: -44.89 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.19 kcal Total: -77.64 1.67 -75.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032865548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.882 kcal (2) G-P(sol) polarization free energy of solvation -77.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds