Wall clock time and date at job start Fri Apr 10 2020 14:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99954 * 2 1 4 4 C 1.53002 * 109.47026 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47507 * 46.98932 * 4 3 2 6 6 C 1.46903 * 111.00020 * 193.23001 * 5 4 3 7 7 C 1.50700 * 109.47094 * 169.99561 * 6 5 4 8 8 C 1.38295 * 119.93040 * 269.72840 * 7 6 5 9 9 C 1.38108 * 120.06866 * 179.72815 * 8 7 6 10 10 C 1.38884 * 119.92433 * 0.56139 * 9 8 7 11 11 O 1.35756 * 120.06406 * 179.68581 * 10 9 8 12 12 C 1.34825 * 116.99700 * 186.34850 * 11 10 9 13 13 H 1.08007 * 120.00614 * 5.43664 * 12 11 10 14 14 C 1.38658 * 120.00265 * 185.44082 * 12 11 10 15 15 N 1.31564 * 119.99295 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00259 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47397 * 90.00090 * 16 14 12 18 18 H 1.48508 * 109.47155 * 209.99938 * 16 14 12 19 19 H 1.48493 * 109.47375 * 329.99614 * 16 14 12 20 20 C 1.38877 * 119.86334 * 359.71154 * 10 9 8 21 21 C 1.38098 * 119.93301 * 359.97438 * 20 10 9 22 22 C 1.46892 * 111.00243 * 69.27242 * 5 4 3 23 23 H 1.08996 * 109.47193 * 148.93617 * 22 5 4 24 24 C 1.53005 * 109.47192 * 268.93257 * 22 5 4 25 25 C 1.50701 * 109.47126 * 28.93260 * 22 5 4 26 26 N 1.34775 * 120.00145 * 116.61166 * 25 22 5 27 27 O 1.21288 * 119.99834 * 296.60662 * 25 22 5 28 28 H 1.09001 * 109.46982 * 299.99845 * 1 2 3 29 29 H 1.09002 * 109.47155 * 60.00244 * 1 2 3 30 30 H 1.09007 * 109.46906 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47714 * 60.00034 * 3 2 1 32 32 H 1.09006 * 109.46767 * 300.00003 * 3 2 1 33 33 H 1.09000 * 109.46737 * 286.98532 * 4 3 2 34 34 H 1.09005 * 109.47201 * 166.99140 * 4 3 2 35 35 H 1.08995 * 109.47009 * 289.99511 * 6 5 4 36 36 H 1.08997 * 109.46912 * 49.99717 * 6 5 4 37 37 H 1.07997 * 119.97191 * 359.97181 * 8 7 6 38 38 H 1.07992 * 120.03589 * 180.26943 * 9 8 7 39 39 H 0.96999 * 119.99661 * 179.97438 * 15 14 12 40 40 H 1.08005 * 120.03084 * 179.97438 * 20 10 9 41 41 H 1.07996 * 119.96492 * 180.02562 * 21 20 10 42 42 H 1.09004 * 109.46960 * 49.19757 * 24 22 5 43 43 H 1.08996 * 109.47243 * 169.20075 * 24 22 5 44 44 H 1.08999 * 109.46839 * 289.19907 * 24 22 5 45 45 H 0.96998 * 119.99692 * 0.02562 * 26 25 22 46 46 H 0.97000 * 120.00231 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9486 0.2044 -1.0137 6 6 5.3575 -0.1726 -0.8377 7 6 5.6778 -1.3475 -1.7253 8 6 5.5190 -2.6360 -1.2486 9 6 5.8063 -3.7149 -2.0615 10 6 6.2663 -3.5047 -3.3549 11 8 6.5557 -4.5632 -4.1542 12 6 7.1209 -4.2922 -5.3479 13 1 7.4039 -3.2793 -5.5941 14 6 7.3389 -5.3138 -6.2597 15 7 6.9946 -6.5477 -5.9597 16 14 8.1213 -4.9383 -7.9138 17 1 9.5972 -5.0590 -7.8022 18 1 7.6213 -5.9010 -8.9280 19 1 7.7675 -3.5564 -8.3265 20 6 6.4301 -2.2096 -3.8287 21 6 6.1349 -1.1350 -3.0132 22 6 3.7055 0.7143 -2.3696 23 1 4.4523 0.3062 -3.0506 24 6 2.3094 0.2910 -2.8310 25 6 3.7985 2.2184 -2.3649 26 7 4.7578 2.8366 -3.0818 27 8 3.0098 2.8727 -1.7160 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.8742 0.8565 0.9820 34 1 3.9766 2.1542 -0.2320 35 1 5.9952 0.6698 -1.1058 36 1 5.5335 -0.4448 0.2030 37 1 5.1661 -2.7987 -0.2410 38 1 5.6779 -4.7208 -1.6901 39 1 7.1468 -7.2623 -6.5977 40 1 6.7881 -2.0430 -4.8340 41 1 6.2617 -0.1276 -3.3812 42 1 1.5821 0.5314 -2.0555 43 1 2.0528 0.8227 -3.7472 44 1 2.2988 -0.7826 -3.0188 45 1 5.3882 2.3133 -3.6011 46 1 4.8179 3.8047 -3.0784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264583567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:21 Heat of formation + Delta-G solvation = -55.408008 kcal Electronic energy + Delta-G solvation = -28176.565809 eV Core-core repulsion = 24261.361455 eV Total energy + Delta-G solvation = -3915.204354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.81073 -39.03958 -37.76997 -37.10415 -35.65963 -33.98268 -32.36863 -31.39209 -30.77245 -30.14511 -28.24084 -26.13628 -25.51606 -24.65051 -23.42957 -22.23851 -21.88351 -20.48838 -19.78075 -18.00198 -17.58783 -17.36859 -16.90054 -16.62480 -15.93047 -15.43356 -15.27414 -14.73783 -14.65871 -14.56762 -14.29452 -14.09323 -13.67685 -13.54156 -13.22006 -12.91870 -12.66366 -12.56563 -12.38457 -12.07575 -11.88671 -11.75973 -11.65900 -11.33965 -11.25525 -11.17186 -10.91038 -10.67835 -10.58125 -10.46031 -10.41264 -10.05234 -9.82892 -9.38173 -9.22071 -8.84032 -8.18388 -8.15389 -7.18504 -6.46237 -4.05080 2.19038 2.25274 2.40372 3.10898 3.11544 3.16451 3.35556 3.83542 3.94982 4.08575 4.61789 4.70544 5.02564 5.03012 5.11534 5.19850 5.27825 5.31552 5.35234 5.39359 5.43424 5.51189 5.62705 5.68309 5.69951 5.75670 5.80688 5.85065 5.91248 6.00129 6.14448 6.21015 6.41861 6.50416 6.55355 6.70332 6.88110 6.94845 6.99248 7.09645 7.18303 7.25179 7.37917 7.42604 7.44417 7.82221 7.98395 8.04421 8.99301 9.70306 10.71821 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003107 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.409626 B = 9009.319326 C = 9566.670546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.056 3.944 4 C 0.048 3.952 5 N -0.490 5.490 6 C 0.106 3.894 7 C -0.177 4.177 8 C -0.048 4.048 9 C -0.192 4.192 10 C 0.156 3.844 11 O -0.178 6.178 12 C -0.391 4.391 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.862 5.862 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.268 1.268 20 C -0.233 4.233 21 C -0.071 4.071 22 C 0.060 3.940 23 H 0.103 0.897 24 C -0.135 4.135 25 C 0.493 3.507 26 N -0.854 5.854 27 O -0.539 6.539 28 H 0.032 0.968 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.030 0.970 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.073 0.927 45 H 0.403 0.597 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 17.033 7.487 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.020 4.020 4 C -0.079 4.079 5 N -0.215 5.215 6 C -0.021 4.021 7 C -0.178 4.178 8 C -0.066 4.066 9 C -0.211 4.211 10 C 0.102 3.898 11 O -0.081 6.081 12 C -0.468 4.468 13 H 0.108 0.892 14 C -0.165 4.165 15 N -0.496 5.496 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.252 4.252 21 C -0.090 4.090 22 C -0.052 4.052 23 H 0.121 0.879 24 C -0.193 4.193 25 C 0.278 3.722 26 N -0.417 5.417 27 O -0.416 6.416 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.231 0.769 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -6.938 16.205 7.950 19.337 hybrid contribution 1.097 1.388 -1.277 2.181 sum -5.841 17.592 6.674 19.701 Atomic orbital electron populations 1.22671 0.82620 1.02230 0.99161 1.88062 1.17930 1.27620 1.95024 1.22965 0.92961 0.84759 1.01333 1.22483 0.95078 0.94711 0.95631 1.62416 1.20112 1.38813 1.00171 1.20958 0.86689 0.94850 0.99557 1.19017 1.09720 0.93672 0.95406 1.20457 0.96592 0.91274 0.98312 1.20237 1.09091 0.99068 0.92698 1.19407 0.91928 0.87583 0.90860 1.84001 1.68349 1.28498 1.27255 1.21291 1.38492 0.96031 0.90942 0.89172 1.25286 0.97382 0.94589 0.99270 1.70041 1.44073 0.99641 1.35885 0.85728 0.79085 0.78549 0.80146 1.19910 1.20262 1.19249 1.21084 1.10536 0.92218 1.01357 1.20488 0.98308 0.96912 0.93259 1.22097 1.01904 0.87346 0.93854 0.87911 1.21877 0.94500 1.02481 1.00453 1.21990 0.79729 0.92557 0.77947 1.44201 1.34798 1.11357 1.51366 1.90619 1.40979 1.68154 1.41884 0.94985 0.94655 0.89976 0.94606 0.89662 0.91040 0.92162 0.95212 0.90257 0.86919 0.86557 0.92009 0.85671 0.88318 0.90170 0.93414 0.90779 0.76857 0.77328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.69 101.05 1.08 1.40 16 2 O -0.37 -5.02 8.91 -35.23 -0.31 -5.33 16 3 C 0.06 0.72 4.70 37.16 0.17 0.89 16 4 C 0.05 0.61 4.94 -3.83 -0.02 0.59 16 5 N -0.49 -6.56 3.95 -229.48 -0.91 -7.46 16 6 C 0.11 1.40 5.09 -4.97 -0.03 1.37 16 7 C -0.18 -2.84 5.02 -104.58 -0.53 -3.36 16 8 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 9 C -0.19 -3.97 9.99 -39.39 -0.39 -4.37 16 10 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 11 O -0.18 -4.98 9.76 0.04 0.00 -4.98 16 12 C -0.39 -10.68 9.44 30.89 0.29 -10.39 16 13 H 0.09 2.26 5.31 -52.48 -0.28 1.98 16 14 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 15 N -0.86 -24.99 13.67 55.48 0.76 -24.23 16 16 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 C -0.23 -4.75 9.13 -39.40 -0.36 -5.11 16 21 C -0.07 -1.18 8.01 -39.61 -0.32 -1.49 16 22 C 0.06 0.75 2.54 -68.87 -0.18 0.58 16 23 H 0.10 1.30 4.32 -51.93 -0.22 1.08 16 24 C -0.14 -1.77 9.02 37.16 0.34 -1.44 16 25 C 0.49 5.71 5.91 -10.99 -0.06 5.64 16 26 N -0.85 -6.94 8.87 31.22 0.28 -6.66 16 27 O -0.54 -7.39 12.11 5.55 0.07 -7.32 16 28 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.03 0.35 7.86 -51.93 -0.41 -0.06 16 30 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 31 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 1.17 4.07 -51.93 -0.21 0.96 16 33 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 34 H 0.06 0.77 5.33 -51.93 -0.28 0.50 16 35 H 0.03 0.36 8.06 -51.93 -0.42 -0.06 16 36 H 0.08 0.99 7.83 -51.93 -0.41 0.59 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.13 2.56 5.73 -52.48 -0.30 2.26 16 41 H 0.10 1.30 7.23 -52.49 -0.38 0.92 16 42 H 0.08 1.08 3.34 -51.93 -0.17 0.90 16 43 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.40 2.59 8.67 -40.82 -0.35 2.24 16 46 H 0.40 2.65 8.93 -40.82 -0.36 2.28 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -31.95 364.12 -6.69 -38.64 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.30 Total: 9.35 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -0.74 Total: -12.55 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.13 Total: -38.35 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.25 Total: -17.64 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.95 -6.69 -38.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264583567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.768 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds