Wall clock time and date at job start Fri Apr 10 2020 14:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99954 * 2 1 4 4 C 1.53002 * 109.47026 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47507 * 46.98932 * 4 3 2 6 6 C 1.46903 * 111.00020 * 193.23001 * 5 4 3 7 7 C 1.50700 * 109.47094 * 169.99561 * 6 5 4 8 8 C 1.38295 * 119.93040 * 269.72840 * 7 6 5 9 9 C 1.38108 * 120.06866 * 179.72815 * 8 7 6 10 10 C 1.38884 * 119.92433 * 0.56139 * 9 8 7 11 11 O 1.35756 * 120.06406 * 179.68581 * 10 9 8 12 12 C 1.34825 * 116.99700 * 186.34850 * 11 10 9 13 13 H 1.08007 * 120.00614 * 5.43664 * 12 11 10 14 14 C 1.38658 * 120.00265 * 185.44082 * 12 11 10 15 15 N 1.31564 * 119.99295 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00259 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47397 * 90.00090 * 16 14 12 18 18 H 1.48508 * 109.47155 * 209.99938 * 16 14 12 19 19 H 1.48493 * 109.47375 * 329.99614 * 16 14 12 20 20 C 1.38877 * 119.86334 * 359.71154 * 10 9 8 21 21 C 1.38098 * 119.93301 * 359.97438 * 20 10 9 22 22 C 1.46892 * 111.00243 * 69.27242 * 5 4 3 23 23 H 1.08996 * 109.47193 * 148.93617 * 22 5 4 24 24 C 1.53005 * 109.47192 * 268.93257 * 22 5 4 25 25 C 1.50701 * 109.47126 * 28.93260 * 22 5 4 26 26 N 1.34775 * 120.00145 * 116.61166 * 25 22 5 27 27 O 1.21288 * 119.99834 * 296.60662 * 25 22 5 28 28 H 1.09001 * 109.46982 * 299.99845 * 1 2 3 29 29 H 1.09002 * 109.47155 * 60.00244 * 1 2 3 30 30 H 1.09007 * 109.46906 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47714 * 60.00034 * 3 2 1 32 32 H 1.09006 * 109.46767 * 300.00003 * 3 2 1 33 33 H 1.09000 * 109.46737 * 286.98532 * 4 3 2 34 34 H 1.09005 * 109.47201 * 166.99140 * 4 3 2 35 35 H 1.08995 * 109.47009 * 289.99511 * 6 5 4 36 36 H 1.08997 * 109.46912 * 49.99717 * 6 5 4 37 37 H 1.07997 * 119.97191 * 359.97181 * 8 7 6 38 38 H 1.07992 * 120.03589 * 180.26943 * 9 8 7 39 39 H 0.96999 * 119.99661 * 179.97438 * 15 14 12 40 40 H 1.08005 * 120.03084 * 179.97438 * 20 10 9 41 41 H 1.07996 * 119.96492 * 180.02562 * 21 20 10 42 42 H 1.09004 * 109.46960 * 49.19757 * 24 22 5 43 43 H 1.08996 * 109.47243 * 169.20075 * 24 22 5 44 44 H 1.08999 * 109.46839 * 289.19907 * 24 22 5 45 45 H 0.96998 * 119.99692 * 0.02562 * 26 25 22 46 46 H 0.97000 * 120.00231 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9486 0.2044 -1.0137 6 6 5.3575 -0.1726 -0.8377 7 6 5.6778 -1.3475 -1.7253 8 6 5.5190 -2.6360 -1.2486 9 6 5.8063 -3.7149 -2.0615 10 6 6.2663 -3.5047 -3.3549 11 8 6.5557 -4.5632 -4.1542 12 6 7.1209 -4.2922 -5.3479 13 1 7.4039 -3.2793 -5.5941 14 6 7.3389 -5.3138 -6.2597 15 7 6.9946 -6.5477 -5.9597 16 14 8.1213 -4.9383 -7.9138 17 1 9.5972 -5.0590 -7.8022 18 1 7.6213 -5.9010 -8.9280 19 1 7.7675 -3.5564 -8.3265 20 6 6.4301 -2.2096 -3.8287 21 6 6.1349 -1.1350 -3.0132 22 6 3.7055 0.7143 -2.3696 23 1 4.4523 0.3062 -3.0506 24 6 2.3094 0.2910 -2.8310 25 6 3.7985 2.2184 -2.3649 26 7 4.7578 2.8366 -3.0818 27 8 3.0098 2.8727 -1.7160 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.8742 0.8565 0.9820 34 1 3.9766 2.1542 -0.2320 35 1 5.9952 0.6698 -1.1058 36 1 5.5335 -0.4448 0.2030 37 1 5.1661 -2.7987 -0.2410 38 1 5.6779 -4.7208 -1.6901 39 1 7.1468 -7.2623 -6.5977 40 1 6.7881 -2.0430 -4.8340 41 1 6.2617 -0.1276 -3.3812 42 1 1.5821 0.5314 -2.0555 43 1 2.0528 0.8227 -3.7472 44 1 2.2988 -0.7826 -3.0188 45 1 5.3882 2.3133 -3.6011 46 1 4.8179 3.8047 -3.0784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264583567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:20 Heat of formation + Delta-G solvation = -79.949173 kcal Electronic energy + Delta-G solvation = -28177.629993 eV Core-core repulsion = 24261.361455 eV Total energy + Delta-G solvation = -3916.268539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.78075 -40.65746 -38.81425 -38.47521 -36.90712 -34.78510 -34.27683 -32.50864 -32.02501 -31.61029 -29.48098 -27.47442 -26.92226 -25.83976 -24.55253 -23.59914 -23.03132 -21.97211 -20.71472 -19.79709 -18.81448 -18.42245 -18.16233 -17.55490 -16.93700 -16.51958 -16.37271 -16.28310 -16.06849 -15.73620 -15.54081 -15.39113 -15.18306 -14.97512 -14.43135 -14.27905 -14.04935 -13.76758 -13.53007 -13.43931 -13.11497 -12.94196 -12.88264 -12.70244 -12.51511 -12.32927 -12.21513 -12.14359 -12.08679 -11.76028 -11.58731 -11.14489 -11.00004 -10.75147 -10.60821 -10.16337 -9.68815 -9.17815 -8.84125 -8.43168 -6.10868 0.66022 0.72841 1.37623 1.46371 1.49872 1.54975 2.20652 2.56339 2.72083 2.98306 3.14580 3.34081 3.57658 3.86631 3.95229 4.03169 4.08594 4.25591 4.29007 4.31565 4.45251 4.47590 4.59572 4.60645 4.65682 4.70666 4.74893 4.82753 4.85258 4.86325 4.92663 5.02997 5.12286 5.14376 5.19297 5.35830 5.46581 5.61727 5.76631 5.82011 5.87937 6.05408 6.07496 6.08492 6.28876 6.40236 6.52088 7.01871 7.27802 7.84818 8.80457 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003107 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.409626 B = 9009.319326 C = 9566.670546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.390 6.390 3 C 0.058 3.942 4 C 0.052 3.948 5 N -0.503 5.503 6 C 0.108 3.892 7 C -0.150 4.150 8 C -0.046 4.046 9 C -0.206 4.206 10 C 0.115 3.885 11 O -0.236 6.236 12 C -0.409 4.409 13 H 0.104 0.896 14 C -0.025 4.025 15 N -0.923 5.923 16 Si 1.018 2.982 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.249 1.249 20 C -0.237 4.237 21 C -0.061 4.061 22 C 0.059 3.941 23 H 0.103 0.897 24 C -0.135 4.135 25 C 0.495 3.505 26 N -0.835 5.835 27 O -0.562 6.562 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.107 0.893 39 H 0.271 0.729 40 H 0.121 0.879 41 H 0.145 0.855 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.414 0.586 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.848 20.695 7.948 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.309 6.309 3 C -0.018 4.018 4 C -0.075 4.075 5 N -0.228 5.228 6 C -0.019 4.019 7 C -0.151 4.151 8 C -0.064 4.064 9 C -0.225 4.225 10 C 0.064 3.936 11 O -0.142 6.142 12 C -0.485 4.485 13 H 0.121 0.879 14 C -0.222 4.222 15 N -0.562 5.562 16 Si 0.837 3.163 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.173 1.173 20 C -0.256 4.256 21 C -0.080 4.080 22 C -0.052 4.052 23 H 0.121 0.879 24 C -0.193 4.193 25 C 0.279 3.721 26 N -0.400 5.400 27 O -0.441 6.441 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.156 0.844 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.162 0.838 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.244 0.756 46 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -6.620 19.931 8.437 22.633 hybrid contribution 0.857 0.488 -1.142 1.509 sum -5.763 20.420 7.295 22.436 Atomic orbital electron populations 1.22795 0.81346 1.02922 0.99973 1.88016 1.19480 1.28237 1.95164 1.22939 0.93177 0.84438 1.01266 1.22467 0.94924 0.94483 0.95606 1.62298 1.19951 1.39796 1.00758 1.20979 0.87239 0.94092 0.99548 1.19471 1.06013 0.94258 0.95372 1.20782 0.95606 0.91058 0.98967 1.20429 1.09632 0.99972 0.92503 1.19940 0.93873 0.88238 0.91516 1.83960 1.71067 1.30868 1.28342 1.21813 1.38712 0.96871 0.91135 0.87862 1.26592 0.97958 0.94170 1.03522 1.70199 1.47198 1.01022 1.37748 0.84597 0.78132 0.79129 0.74435 1.18954 1.19967 1.17264 1.21208 1.10523 0.92062 1.01831 1.20904 0.96374 0.97905 0.92786 1.22047 1.01307 0.88445 0.93434 0.87872 1.21841 0.95202 1.01302 1.00931 1.21680 0.80212 0.91924 0.78274 1.44006 1.33756 1.12094 1.50115 1.90626 1.42053 1.68309 1.43146 0.93663 0.94312 0.89419 0.93814 0.90595 0.90264 0.91967 0.92789 0.88882 0.84418 0.87515 0.91987 0.86110 0.83776 0.90543 0.92378 0.92711 0.75563 0.76087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.69 113.37 1.21 1.72 16 2 O -0.39 -9.95 8.91 -148.98 -1.33 -11.28 16 3 C 0.06 1.35 4.70 71.98 0.34 1.69 16 4 C 0.05 1.15 4.94 86.30 0.43 1.58 16 5 N -0.50 -11.75 3.95 -879.94 -3.48 -15.23 16 6 C 0.11 2.36 5.09 85.56 0.44 2.80 16 7 C -0.15 -4.32 5.02 -19.84 -0.10 -4.42 16 8 C -0.05 -1.52 9.69 22.25 0.22 -1.31 16 9 C -0.21 -8.74 9.99 22.39 0.22 -8.51 16 10 C 0.11 5.56 6.65 22.58 0.15 5.71 16 11 O -0.24 -14.03 9.76 -22.76 -0.22 -14.26 16 12 C -0.41 -23.33 9.44 67.92 0.64 -22.68 16 13 H 0.10 5.30 5.31 -2.91 -0.02 5.29 16 14 C -0.03 -1.42 5.49 84.83 0.47 -0.96 16 15 N -0.92 -56.57 13.67 21.62 0.30 -56.28 16 16 Si 1.02 41.98 29.55 68.60 2.03 44.01 16 17 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 20 C -0.24 -9.56 9.13 22.39 0.20 -9.35 16 21 C -0.06 -1.84 8.01 22.25 0.18 -1.66 16 22 C 0.06 1.31 2.54 44.17 0.11 1.42 16 23 H 0.10 2.21 4.32 -2.39 -0.01 2.20 16 24 C -0.13 -3.31 9.02 71.98 0.65 -2.66 16 25 C 0.50 9.75 5.91 87.66 0.52 10.27 16 26 N -0.84 -10.14 8.87 -173.53 -1.54 -11.68 16 27 O -0.56 -13.82 12.11 -3.05 -0.04 -13.86 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.04 0.72 7.86 -2.39 -0.02 0.70 16 30 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.94 4.07 -2.38 -0.01 1.93 16 33 H 0.08 1.61 7.86 -2.39 -0.02 1.59 16 34 H 0.06 1.37 5.33 -2.38 -0.01 1.36 16 35 H 0.05 0.98 8.06 -2.39 -0.02 0.96 16 36 H 0.09 1.88 7.83 -2.39 -0.02 1.86 16 37 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 38 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.12 4.92 5.73 -2.91 -0.02 4.90 16 41 H 0.14 3.02 7.23 -2.91 -0.02 3.00 16 42 H 0.08 1.95 3.34 -2.38 -0.01 1.94 16 43 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.41 3.36 8.67 -92.71 -0.80 2.56 16 46 H 0.41 3.82 8.93 -92.71 -0.83 2.99 16 Total: -1.00 -74.23 364.12 0.79 -73.43 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -0.59 Total: 31.50 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 5.67 Total: -26.36 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -4.72 Total: -83.18 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -1.59 Total: -39.40 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -74.23 0.79 -73.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264583567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.517 kcal (2) G-P(sol) polarization free energy of solvation -74.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds