Wall clock time and date at job start Fri Apr 10 2020 14:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47296 * 2 1 4 4 C 1.46502 * 119.99965 * 265.08979 * 3 2 1 5 5 C 1.50706 * 109.46947 * 270.00054 * 4 3 2 6 6 H 1.07999 * 119.99868 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99754 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99970 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00018 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46623 * 90.00356 * 9 7 5 11 11 H 1.48499 * 109.47222 * 209.99936 * 9 7 5 12 12 H 1.48501 * 109.47044 * 330.00181 * 9 7 5 13 13 C 1.34772 * 120.00076 * 85.08844 * 3 2 1 14 14 O 1.21287 * 119.99794 * 5.01410 * 13 3 2 15 15 C 1.50693 * 120.00115 * 185.01004 * 13 3 2 16 16 C 1.53002 * 109.47021 * 77.41663 * 15 13 3 17 17 O 1.42897 * 109.47280 * 317.41882 * 15 13 3 18 18 C 1.53005 * 109.47308 * 197.41310 * 15 13 3 19 19 N 1.46498 * 109.46958 * 184.99923 * 18 15 13 20 20 C 1.35764 * 119.62262 * 90.00412 * 19 18 15 21 21 C 1.35352 * 120.70154 * 179.69764 * 20 19 18 22 22 C 1.40195 * 119.94850 * 0.02562 * 21 20 19 23 23 C 1.50698 * 120.36651 * 179.97438 * 22 21 20 24 24 C 1.36400 * 119.26649 * 0.02562 * 22 21 20 25 25 C 1.34663 * 119.62701 * 269.72597 * 19 18 15 26 26 O 1.22053 * 119.98241 * 0.26064 * 25 19 18 27 27 H 1.09001 * 109.47391 * 184.98656 * 1 2 3 28 28 H 1.09002 * 109.46732 * 304.98150 * 1 2 3 29 29 H 1.09001 * 109.47331 * 64.97963 * 1 2 3 30 30 H 1.09002 * 109.47442 * 239.99952 * 2 1 3 31 31 H 1.09003 * 109.47095 * 119.99897 * 2 1 3 32 32 H 1.09004 * 109.46708 * 29.99549 * 4 3 2 33 33 H 1.08992 * 109.47234 * 149.99906 * 4 3 2 34 34 H 0.97002 * 119.99808 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47371 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47159 * 299.99984 * 16 15 13 37 37 H 1.08996 * 109.47227 * 60.00124 * 16 15 13 38 38 H 0.96705 * 114.00068 * 304.22110 * 17 15 13 39 39 H 1.08996 * 109.46701 * 65.00303 * 18 15 13 40 40 H 1.08995 * 109.47323 * 305.00368 * 18 15 13 41 41 H 1.08004 * 119.65210 * 359.72107 * 20 19 18 42 42 H 1.08002 * 120.02145 * 180.02562 * 21 20 19 43 43 H 1.08997 * 109.47651 * 90.00264 * 23 22 21 44 44 H 1.09002 * 109.47532 * 210.00542 * 23 22 21 45 45 H 1.09010 * 109.47085 * 330.00122 * 23 22 21 46 46 H 1.07999 * 120.34451 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3649 2.0356 -1.2641 5 6 3.8184 1.7881 -1.5759 6 1 4.4236 1.2023 -0.8998 7 6 4.3756 2.3094 -2.7242 8 7 3.6388 3.0232 -3.5472 9 14 6.1774 2.0032 -3.1104 10 1 6.3076 0.7584 -3.9096 11 1 6.7190 3.1481 -3.8857 12 1 6.9379 1.8597 -1.8430 13 6 2.1488 2.0499 1.1629 14 8 1.9494 1.4808 2.2152 15 6 2.5424 3.5045 1.1556 16 6 1.3301 4.3590 0.7803 17 8 3.5848 3.7111 0.2003 18 6 3.0383 3.9057 2.5464 19 7 3.3079 5.3454 2.5721 20 6 2.3190 6.2072 2.9223 21 6 2.5458 7.5410 2.9592 22 6 3.8128 8.0449 2.6332 23 6 4.0755 9.5283 2.6707 24 6 4.8048 7.1776 2.2807 25 6 4.5354 5.7986 2.2537 26 8 5.4142 5.0113 1.9414 27 1 -0.3634 -1.0238 0.0893 28 1 -0.3633 0.5892 0.8420 29 1 -0.3634 0.4346 -0.9312 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7472 1.6291 -2.0649 33 1 2.1892 3.1079 -1.1783 34 1 4.0307 3.3897 -4.3553 35 1 1.6149 5.4112 0.7746 36 1 0.9768 4.0733 -0.2105 37 1 0.5349 4.2015 1.5090 38 1 4.3617 3.1521 0.3387 39 1 3.9534 3.3604 2.7770 40 1 2.2757 3.6655 3.2872 41 1 1.3410 5.8243 3.1743 42 1 1.7512 8.2167 3.2397 43 1 4.4222 9.8110 3.6647 44 1 4.8384 9.7810 1.9344 45 1 3.1558 10.0661 2.4401 46 1 5.7874 7.5467 2.0266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279094850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:32 Heat of formation + Delta-G solvation = -80.144234 kcal Electronic energy + Delta-G solvation = -29322.604396 eV Core-core repulsion = 25406.327399 eV Total energy + Delta-G solvation = -3916.276997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35682 -39.62667 -36.79003 -36.53741 -35.45751 -34.63534 -32.63063 -31.20510 -30.41700 -29.86745 -28.73868 -26.96982 -26.25306 -23.90237 -23.47537 -22.96361 -21.80389 -20.82893 -18.66733 -17.59406 -17.33480 -16.62468 -16.34065 -16.06520 -15.85114 -15.47736 -14.91031 -14.51405 -14.20055 -14.11601 -14.02573 -13.74365 -13.44560 -13.32524 -12.92302 -12.70515 -12.40020 -12.34718 -12.21155 -12.12997 -11.78986 -11.72071 -11.66645 -11.63505 -11.43787 -11.29195 -11.16926 -10.84652 -10.74568 -10.49851 -10.12649 -9.85230 -9.69919 -9.64932 -9.47260 -8.65487 -8.35448 -7.77709 -7.73132 -6.05152 -4.08725 0.94893 2.03033 2.78474 3.15761 3.32342 3.40296 3.44929 3.74419 3.92736 4.44634 4.54069 4.67580 4.75377 4.90256 4.94637 5.03595 5.17074 5.24882 5.31776 5.32942 5.42401 5.55028 5.58249 5.61339 5.74767 5.75273 5.82369 5.85290 5.95671 6.02803 6.09090 6.21113 6.23218 6.33912 6.38715 6.43562 6.57497 6.65896 6.81585 7.30677 7.38927 7.57596 7.85002 8.19169 8.25983 8.34524 8.43841 8.80642 8.96084 9.55696 11.02833 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.005268 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.963353 B = 5313.956213 C = 6907.127947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.111 3.889 3 N -0.580 5.580 4 C 0.233 3.767 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.073 3.927 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.493 3.507 14 O -0.577 6.577 15 C 0.109 3.891 16 C -0.141 4.141 17 O -0.501 6.501 18 C 0.079 3.921 19 N -0.485 5.485 20 C 0.142 3.858 21 C -0.241 4.241 22 C 0.007 3.993 23 C -0.120 4.120 24 C -0.246 4.246 25 C 0.520 3.480 26 O -0.539 6.539 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.262 0.738 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.387 0.613 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.158 0.842 42 H 0.140 0.860 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 8.720 11.870 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.012 4.012 3 N -0.309 5.309 4 C 0.114 3.886 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.130 4.130 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.279 3.721 14 O -0.459 6.459 15 C 0.063 3.937 16 C -0.198 4.198 17 O -0.309 6.309 18 C -0.043 4.043 19 N -0.195 5.195 20 C 0.014 3.986 21 C -0.264 4.264 22 C 0.004 3.996 23 C -0.177 4.177 24 C -0.268 4.268 25 C 0.322 3.678 26 O -0.420 6.420 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.239 0.761 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.175 0.825 42 H 0.158 0.842 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.283 8.391 11.736 15.735 hybrid contribution 1.301 -0.542 -0.281 1.437 sum -4.983 7.849 11.455 14.753 Atomic orbital electron populations 1.22097 0.96776 1.01303 1.01819 1.21294 0.93390 0.83970 1.02549 1.48346 1.61004 1.12936 1.08612 1.19774 0.95760 0.94825 0.78240 1.21258 0.95068 1.33233 1.06702 0.92661 1.24795 0.97654 0.94623 0.95936 1.69905 1.36029 1.34316 1.12350 0.86607 0.85397 0.77520 0.78560 1.20939 1.21220 1.19733 1.21049 0.77918 0.89269 0.83902 1.90597 1.53871 1.70069 1.31350 1.21370 0.91624 0.91765 0.88967 1.21862 0.94714 0.99875 1.03369 1.86845 1.27958 1.66253 1.49825 1.22494 1.04239 0.78705 0.98911 1.45410 1.11188 1.08404 1.54497 1.21912 0.93170 0.90608 0.92894 1.20425 0.98461 0.93841 1.13715 1.20120 0.92677 0.96320 0.90513 1.20889 1.02883 0.91122 1.02796 1.21952 1.01477 0.91750 1.11583 1.17008 0.81255 0.90272 0.79293 1.90955 1.43746 1.58014 1.49261 0.92371 0.92893 0.92617 0.90197 0.91343 0.95777 0.91650 0.92830 0.91228 0.90070 0.91639 0.76144 0.87869 0.87862 0.82466 0.84184 0.90506 0.90987 0.90996 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.20 37.16 0.38 -2.10 16 2 C 0.11 2.02 6.12 -4.04 -0.02 2.00 16 3 N -0.58 -11.91 2.47 -175.06 -0.43 -12.34 16 4 C 0.23 5.49 4.59 -5.19 -0.02 5.46 16 5 C -0.52 -13.57 6.82 -34.44 -0.23 -13.81 16 6 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 7 C 0.07 1.97 5.46 -17.82 -0.10 1.88 16 8 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.49 9.79 6.57 -10.99 -0.07 9.72 16 14 O -0.58 -12.05 15.53 5.55 0.09 -11.97 16 15 C 0.11 1.96 0.73 -91.77 -0.07 1.89 16 16 C -0.14 -2.19 7.72 37.16 0.29 -1.90 16 17 O -0.50 -10.91 7.98 -43.43 -0.35 -11.25 16 18 C 0.08 1.25 4.24 -4.04 -0.02 1.24 16 19 N -0.49 -7.15 2.26 -119.77 -0.27 -7.42 16 20 C 0.14 1.56 8.05 -16.84 -0.14 1.42 16 21 C -0.24 -2.38 9.71 -39.88 -0.39 -2.77 16 22 C 0.01 0.08 5.89 -104.55 -0.62 -0.53 16 23 C -0.12 -0.95 10.03 36.00 0.36 -0.59 16 24 C -0.25 -3.57 9.65 -39.38 -0.38 -3.95 16 25 C 0.52 9.12 7.03 -15.44 -0.11 9.01 16 26 O -0.54 -11.60 15.73 -3.33 -0.05 -11.65 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 31 H 0.07 1.25 7.51 -51.93 -0.39 0.86 16 32 H 0.02 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.07 1.61 4.14 -51.93 -0.22 1.40 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.07 1.04 6.29 -51.93 -0.33 0.71 16 36 H 0.08 1.41 6.45 -51.93 -0.34 1.08 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.39 8.94 7.67 45.56 0.35 9.29 16 39 H 0.10 1.84 7.38 -51.93 -0.38 1.45 16 40 H 0.10 1.42 7.60 -51.93 -0.39 1.02 16 41 H 0.16 1.21 7.93 -52.48 -0.42 0.79 16 42 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.07 0.46 8.10 -51.92 -0.42 0.04 16 46 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -32.34 371.15 -7.14 -39.47 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.29 Total: 10.44 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.14 Total: 6.96 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.03 Total: -44.10 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.31 Total: -34.87 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.34 -7.14 -39.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279094850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.673 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds