Wall clock time and date at job start Fri Apr 10 2020 14:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47296 * 2 1 4 4 C 1.46502 * 119.99965 * 265.08979 * 3 2 1 5 5 C 1.50706 * 109.46947 * 270.00054 * 4 3 2 6 6 H 1.07999 * 119.99868 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99754 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99970 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00018 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46623 * 90.00356 * 9 7 5 11 11 H 1.48499 * 109.47222 * 209.99936 * 9 7 5 12 12 H 1.48501 * 109.47044 * 330.00181 * 9 7 5 13 13 C 1.34772 * 120.00076 * 85.08844 * 3 2 1 14 14 O 1.21287 * 119.99794 * 5.01410 * 13 3 2 15 15 C 1.50693 * 120.00115 * 185.01004 * 13 3 2 16 16 C 1.53002 * 109.47021 * 77.41663 * 15 13 3 17 17 O 1.42897 * 109.47280 * 317.41882 * 15 13 3 18 18 C 1.53005 * 109.47308 * 197.41310 * 15 13 3 19 19 N 1.46498 * 109.46958 * 184.99923 * 18 15 13 20 20 C 1.35764 * 119.62262 * 90.00412 * 19 18 15 21 21 C 1.35352 * 120.70154 * 179.69764 * 20 19 18 22 22 C 1.40195 * 119.94850 * 0.02562 * 21 20 19 23 23 C 1.50698 * 120.36651 * 179.97438 * 22 21 20 24 24 C 1.36400 * 119.26649 * 0.02562 * 22 21 20 25 25 C 1.34663 * 119.62701 * 269.72597 * 19 18 15 26 26 O 1.22053 * 119.98241 * 0.26064 * 25 19 18 27 27 H 1.09001 * 109.47391 * 184.98656 * 1 2 3 28 28 H 1.09002 * 109.46732 * 304.98150 * 1 2 3 29 29 H 1.09001 * 109.47331 * 64.97963 * 1 2 3 30 30 H 1.09002 * 109.47442 * 239.99952 * 2 1 3 31 31 H 1.09003 * 109.47095 * 119.99897 * 2 1 3 32 32 H 1.09004 * 109.46708 * 29.99549 * 4 3 2 33 33 H 1.08992 * 109.47234 * 149.99906 * 4 3 2 34 34 H 0.97002 * 119.99808 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47371 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47159 * 299.99984 * 16 15 13 37 37 H 1.08996 * 109.47227 * 60.00124 * 16 15 13 38 38 H 0.96705 * 114.00068 * 304.22110 * 17 15 13 39 39 H 1.08996 * 109.46701 * 65.00303 * 18 15 13 40 40 H 1.08995 * 109.47323 * 305.00368 * 18 15 13 41 41 H 1.08004 * 119.65210 * 359.72107 * 20 19 18 42 42 H 1.08002 * 120.02145 * 180.02562 * 21 20 19 43 43 H 1.08997 * 109.47651 * 90.00264 * 23 22 21 44 44 H 1.09002 * 109.47532 * 210.00542 * 23 22 21 45 45 H 1.09010 * 109.47085 * 330.00122 * 23 22 21 46 46 H 1.07999 * 120.34451 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3649 2.0356 -1.2641 5 6 3.8184 1.7881 -1.5759 6 1 4.4236 1.2023 -0.8998 7 6 4.3756 2.3094 -2.7242 8 7 3.6388 3.0232 -3.5472 9 14 6.1774 2.0032 -3.1104 10 1 6.3076 0.7584 -3.9096 11 1 6.7190 3.1481 -3.8857 12 1 6.9379 1.8597 -1.8430 13 6 2.1488 2.0499 1.1629 14 8 1.9494 1.4808 2.2152 15 6 2.5424 3.5045 1.1556 16 6 1.3301 4.3590 0.7803 17 8 3.5848 3.7111 0.2003 18 6 3.0383 3.9057 2.5464 19 7 3.3079 5.3454 2.5721 20 6 2.3190 6.2072 2.9223 21 6 2.5458 7.5410 2.9592 22 6 3.8128 8.0449 2.6332 23 6 4.0755 9.5283 2.6707 24 6 4.8048 7.1776 2.2807 25 6 4.5354 5.7986 2.2537 26 8 5.4142 5.0113 1.9414 27 1 -0.3634 -1.0238 0.0893 28 1 -0.3633 0.5892 0.8420 29 1 -0.3634 0.4346 -0.9312 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7472 1.6291 -2.0649 33 1 2.1892 3.1079 -1.1783 34 1 4.0307 3.3897 -4.3553 35 1 1.6149 5.4112 0.7746 36 1 0.9768 4.0733 -0.2105 37 1 0.5349 4.2015 1.5090 38 1 4.3617 3.1521 0.3387 39 1 3.9534 3.3604 2.7770 40 1 2.2757 3.6655 3.2872 41 1 1.3410 5.8243 3.1743 42 1 1.7512 8.2167 3.2397 43 1 4.4222 9.8110 3.6647 44 1 4.8384 9.7810 1.9344 45 1 3.1558 10.0661 2.4401 46 1 5.7874 7.5467 2.0266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279094850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:31 Heat of formation + Delta-G solvation = -101.143973 kcal Electronic energy + Delta-G solvation = -29323.515013 eV Core-core repulsion = 25406.327399 eV Total energy + Delta-G solvation = -3917.187614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.54107 -41.15162 -38.02345 -37.95849 -37.10531 -35.85239 -34.63523 -32.61273 -31.81874 -30.94067 -29.77123 -28.87143 -27.38447 -25.32635 -24.87458 -24.48114 -23.03066 -22.04956 -20.26111 -19.01100 -18.58163 -18.41324 -17.65669 -17.61341 -16.99341 -16.88757 -16.52585 -16.31730 -15.63085 -15.40658 -15.10263 -15.00164 -14.79677 -14.46916 -14.14699 -14.10893 -13.78160 -13.67456 -13.45887 -13.30084 -13.24670 -13.12078 -13.09806 -12.90011 -12.80393 -12.71511 -12.63048 -12.45862 -12.37421 -12.13217 -11.80542 -11.66531 -11.34712 -10.94938 -10.68353 -10.53669 -10.10563 -9.48710 -8.86392 -8.14595 -6.22014 -0.02786 1.02325 1.36223 1.40860 1.47163 1.55391 1.64973 2.26696 2.44709 2.75304 3.15713 3.31902 3.52070 3.62147 3.64639 3.82039 3.87743 4.10377 4.18497 4.25103 4.38767 4.40930 4.44421 4.52339 4.58227 4.67670 4.72858 4.82687 4.85206 4.87374 4.96109 4.98225 5.06292 5.09568 5.18552 5.25945 5.30604 5.42466 5.55010 5.71291 5.75870 5.85110 6.15583 6.20970 6.51832 6.66395 6.87705 7.14207 7.21867 7.45600 8.92338 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.005268 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.963353 B = 5313.956213 C = 6907.127947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.104 3.896 3 N -0.586 5.586 4 C 0.253 3.747 5 C -0.520 4.520 6 H 0.044 0.956 7 C 0.032 3.968 8 N -0.916 5.916 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.279 1.279 13 C 0.492 3.508 14 O -0.585 6.585 15 C 0.104 3.896 16 C -0.133 4.133 17 O -0.520 6.520 18 C 0.090 3.910 19 N -0.485 5.485 20 C 0.132 3.868 21 C -0.229 4.229 22 C 0.031 3.969 23 C -0.121 4.121 24 C -0.292 4.292 25 C 0.501 3.499 26 O -0.604 6.604 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.008 0.992 33 H 0.057 0.943 34 H 0.262 0.738 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.374 0.626 39 H 0.074 0.926 40 H 0.132 0.868 41 H 0.200 0.800 42 H 0.187 0.813 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.848 10.334 13.462 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 N -0.315 5.315 4 C 0.133 3.867 5 C -0.559 4.559 6 H 0.063 0.937 7 C -0.169 4.169 8 N -0.556 5.556 9 Si 0.769 3.231 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.279 3.721 14 O -0.468 6.468 15 C 0.058 3.942 16 C -0.190 4.190 17 O -0.326 6.326 18 C -0.033 4.033 19 N -0.193 5.193 20 C 0.006 3.994 21 C -0.251 4.251 22 C 0.026 3.974 23 C -0.177 4.177 24 C -0.313 4.313 25 C 0.306 3.694 26 O -0.491 6.491 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.026 0.974 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.224 0.776 39 H 0.092 0.908 40 H 0.150 0.850 41 H 0.217 0.783 42 H 0.204 0.796 43 H 0.115 0.885 44 H 0.087 0.913 45 H 0.115 0.885 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.811 10.022 13.354 18.879 hybrid contribution 1.974 -0.972 -0.665 2.299 sum -6.837 9.050 12.689 17.019 Atomic orbital electron populations 1.21990 0.94172 1.03087 1.01502 1.21478 0.95543 0.82636 1.02204 1.48318 1.61420 1.13896 1.07867 1.19327 0.94029 0.94341 0.79024 1.21423 0.96190 1.32172 1.06066 0.93730 1.25365 1.00579 0.94768 0.96140 1.69983 1.37245 1.35543 1.12832 0.85812 0.81793 0.77560 0.77942 1.19853 1.21403 1.20423 1.21352 0.77343 0.89996 0.83420 1.90582 1.54332 1.70511 1.31338 1.21653 0.91584 0.91243 0.89686 1.21875 0.94306 0.99607 1.03257 1.86820 1.28153 1.66006 1.51624 1.22284 1.03502 0.79519 0.97996 1.45327 1.11345 1.08318 1.54353 1.22729 0.93722 0.90827 0.92159 1.21030 0.98689 0.94059 1.11330 1.20613 0.92206 0.97781 0.86750 1.21016 1.04223 0.88566 1.03901 1.21873 1.02709 0.91026 1.15716 1.17522 0.81621 0.91083 0.79201 1.90902 1.45784 1.59444 1.52957 0.89516 0.93225 0.92818 0.90682 0.91530 0.97440 0.92552 0.92895 0.90420 0.92198 0.87843 0.77639 0.90779 0.84984 0.78318 0.79631 0.88536 0.91277 0.88460 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 10.20 71.98 0.73 -3.60 16 2 C 0.10 3.74 6.12 86.38 0.53 4.27 16 3 N -0.59 -24.27 2.47 -826.14 -2.04 -26.31 16 4 C 0.25 12.21 4.59 85.63 0.39 12.60 16 5 C -0.52 -27.72 6.82 25.60 0.17 -27.54 16 6 H 0.04 2.44 7.81 -2.91 -0.02 2.41 16 7 C 0.03 1.74 5.46 84.65 0.46 2.20 16 8 N -0.92 -52.79 13.29 21.45 0.28 -52.50 16 9 Si 0.94 45.33 29.54 68.60 2.03 47.36 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 13 C 0.49 19.49 6.57 87.66 0.58 20.07 16 14 O -0.58 -23.95 15.53 -3.05 -0.05 -24.00 16 15 C 0.10 3.73 0.73 -11.54 -0.01 3.72 16 16 C -0.13 -3.91 7.72 71.98 0.56 -3.35 16 17 O -0.52 -23.64 7.98 -141.14 -1.13 -24.77 16 18 C 0.09 2.83 4.24 86.38 0.37 3.20 16 19 N -0.48 -13.93 2.26 -650.98 -1.47 -15.40 16 20 C 0.13 2.40 8.05 83.42 0.67 3.07 16 21 C -0.23 -3.49 9.71 22.08 0.21 -3.28 16 22 C 0.03 0.61 5.89 -19.82 -0.12 0.49 16 23 C -0.12 -1.47 10.03 71.24 0.71 -0.76 16 24 C -0.29 -8.64 9.65 22.40 0.22 -8.42 16 25 C 0.50 18.30 7.03 84.82 0.60 18.90 16 26 O -0.60 -28.19 15.73 2.35 0.04 -28.15 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 2.74 8.03 -2.39 -0.02 2.72 16 31 H 0.07 2.41 7.51 -2.39 -0.02 2.39 16 32 H 0.01 0.39 8.07 -2.39 -0.02 0.37 16 33 H 0.06 2.86 4.14 -2.39 -0.01 2.85 16 34 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.08 2.14 6.29 -2.39 -0.01 2.12 16 36 H 0.06 2.03 6.45 -2.39 -0.02 2.02 16 37 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.37 18.59 7.67 -74.05 -0.57 18.02 16 39 H 0.07 2.78 7.38 -2.39 -0.02 2.76 16 40 H 0.13 3.32 7.60 -2.39 -0.02 3.30 16 41 H 0.20 1.90 7.93 -2.91 -0.02 1.88 16 42 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16 43 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 45 H 0.10 0.76 8.10 -2.38 -0.02 0.74 16 46 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -74.87 371.15 4.17 -70.70 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.42 Total: 31.50 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 6.08 Total: 21.57 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -3.22 Total: -94.21 kcal Atomic # 8 Polarization: -75.78 SS G_CDS: -1.14 Total: -76.91 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -74.87 4.17 -70.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279094850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.445 kcal (2) G-P(sol) polarization free energy of solvation -74.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds