Wall clock time and date at job start Fri Apr 10 2020 14:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47307 * 2 1 4 4 C 1.46505 * 119.99815 * 274.88399 * 3 2 1 5 5 C 1.50706 * 109.46851 * 276.76559 * 4 3 2 6 6 H 1.08001 * 119.99973 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00244 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99417 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00232 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46764 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47087 * 119.99764 * 9 7 5 12 12 H 1.48497 * 109.47178 * 240.00098 * 9 7 5 13 13 C 1.34769 * 120.00597 * 94.87558 * 3 2 1 14 14 O 1.21287 * 119.99715 * 5.71666 * 13 3 2 15 15 C 1.50694 * 120.00544 * 185.71376 * 13 3 2 16 16 C 1.53001 * 109.47364 * 286.34083 * 15 13 3 17 17 O 1.42904 * 109.47336 * 46.34396 * 15 13 3 18 18 C 1.53008 * 109.47354 * 166.34148 * 15 13 3 19 19 N 1.46497 * 109.46929 * 180.02562 * 18 15 13 20 20 C 1.35769 * 119.62451 * 264.71723 * 19 18 15 21 21 C 1.50704 * 119.64878 * 0.02562 * 20 19 18 22 22 C 1.35345 * 120.70227 * 179.69094 * 20 19 18 23 23 C 1.40194 * 119.94623 * 0.61469 * 22 20 19 24 24 C 1.36398 * 119.26915 * 359.41526 * 23 22 20 25 25 C 1.34658 * 119.62716 * 84.74285 * 19 18 15 26 26 O 1.22061 * 119.98309 * 359.97438 * 25 19 18 27 27 H 1.08999 * 109.47289 * 304.99630 * 1 2 3 28 28 H 1.09002 * 109.47154 * 65.00281 * 1 2 3 29 29 H 1.09003 * 109.47285 * 184.99985 * 1 2 3 30 30 H 1.09006 * 109.47299 * 239.99806 * 2 1 3 31 31 H 1.08994 * 109.47293 * 119.99911 * 2 1 3 32 32 H 1.08995 * 109.47306 * 36.75824 * 4 3 2 33 33 H 1.08994 * 109.47095 * 156.76677 * 4 3 2 34 34 H 0.96998 * 119.99709 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47343 * 295.51282 * 16 15 13 36 36 H 1.09005 * 109.46791 * 55.50735 * 16 15 13 37 37 H 1.08995 * 109.47222 * 175.50542 * 16 15 13 38 38 H 0.96695 * 113.99672 * 59.99548 * 17 15 13 39 39 H 1.09001 * 109.46735 * 60.00436 * 18 15 13 40 40 H 1.08991 * 109.46936 * 300.00017 * 18 15 13 41 41 H 1.08992 * 109.47090 * 93.95989 * 21 20 19 42 42 H 1.09000 * 109.46958 * 213.96554 * 21 20 19 43 43 H 1.09001 * 109.46852 * 333.96288 * 21 20 19 44 44 H 1.08006 * 120.02932 * 180.30910 * 22 20 19 45 45 H 1.08001 * 120.36930 * 179.69134 * 23 22 20 46 46 H 1.07997 * 120.35612 * 180.29807 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1607 2.1077 -1.2642 5 6 3.4799 1.7539 -1.9011 6 1 4.1458 1.0578 -1.4129 7 6 3.8372 2.3196 -3.1067 8 7 3.0265 3.1677 -3.7009 9 14 5.4727 1.8816 -3.8958 10 1 6.1951 0.9130 -3.0325 11 1 5.2319 1.2734 -5.2289 12 1 6.2914 3.1104 -4.0529 13 6 2.3365 1.9835 1.1628 14 8 2.3181 1.3516 2.1980 15 6 2.7152 3.4420 1.1771 16 6 4.1198 3.6100 0.5940 17 8 1.7811 4.1845 0.3908 18 6 2.6953 3.9601 2.6166 19 7 3.0629 5.3782 2.6303 20 6 4.3514 5.7352 2.8663 21 6 5.3878 4.6687 3.1106 22 6 4.7163 7.0385 2.8777 23 6 3.7562 8.0360 2.6570 24 6 2.4622 7.6755 2.4206 25 6 2.1190 6.3127 2.4093 26 8 0.9648 5.9760 2.1986 27 1 -0.3634 0.5894 0.8418 28 1 -0.3633 0.4343 -0.9314 29 1 -0.3634 -1.0238 0.0896 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3476 1.8317 -1.9355 33 1 2.1257 3.1802 -1.0728 34 1 3.2776 3.5654 -4.5492 35 1 4.8429 3.1100 1.2383 36 1 4.1547 3.1689 -0.4021 37 1 4.3623 4.6707 0.5304 38 1 0.8681 4.1236 0.7033 39 1 3.4079 3.3939 3.2164 40 1 1.6948 3.8405 3.0320 41 1 5.8827 4.4212 2.1716 42 1 6.1253 5.0356 3.8244 43 1 4.9047 3.7781 3.5125 44 1 5.7453 7.3101 3.0616 45 1 4.0389 9.0783 2.6696 46 1 1.7092 8.4292 2.2436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279637774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:36 Heat of formation + Delta-G solvation = -74.307350 kcal Electronic energy + Delta-G solvation = -29692.559427 eV Core-core repulsion = 25776.535536 eV Total energy + Delta-G solvation = -3916.023891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.56909 -39.64221 -37.03734 -36.57998 -35.43391 -34.26089 -32.80498 -31.70912 -31.13872 -30.06934 -27.37676 -27.15613 -26.80987 -24.09369 -23.07462 -22.66830 -22.37683 -20.74932 -18.82594 -17.75382 -17.27252 -16.59328 -16.58060 -16.21413 -15.81463 -15.54104 -14.94928 -14.76592 -14.31310 -14.22781 -14.00324 -13.67446 -13.54729 -13.38287 -13.07668 -12.97096 -12.34515 -12.14818 -12.10497 -12.00438 -11.97225 -11.72430 -11.56468 -11.48465 -11.25756 -11.24531 -11.00195 -10.92927 -10.85401 -10.48640 -10.35379 -10.06019 -9.86232 -9.71404 -9.48445 -8.81076 -8.40128 -7.74922 -7.71719 -6.15395 -4.21153 0.92432 1.99844 2.69545 3.11743 3.19700 3.29081 3.31752 3.71750 3.90805 4.31013 4.37966 4.54566 4.71956 4.82735 4.95575 5.08194 5.16832 5.17729 5.24604 5.32748 5.34327 5.45573 5.56335 5.62731 5.75995 5.80714 5.86977 5.91808 6.07804 6.16656 6.19752 6.23680 6.26711 6.34659 6.40283 6.61260 6.62816 6.85784 7.07319 7.26844 7.43816 7.65121 7.76515 7.97643 8.11997 8.26516 8.32786 8.75631 8.91210 9.42357 10.90568 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.005291 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.612679 B = 5290.694430 C = 6362.657887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.108 3.892 3 N -0.575 5.575 4 C 0.205 3.795 5 C -0.537 4.537 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.494 3.506 14 O -0.577 6.577 15 C 0.121 3.879 16 C -0.170 4.170 17 O -0.517 6.517 18 C 0.073 3.927 19 N -0.479 5.479 20 C 0.176 3.824 21 C -0.140 4.140 22 C -0.247 4.247 23 C -0.015 4.015 24 C -0.251 4.251 25 C 0.523 3.477 26 O -0.549 6.549 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.094 0.906 34 H 0.264 0.736 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.060 0.940 38 H 0.377 0.623 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.141 0.859 45 H 0.130 0.870 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 5.046 12.287 13.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.015 4.015 3 N -0.304 5.304 4 C 0.086 3.914 5 C -0.576 4.576 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.280 3.720 14 O -0.460 6.460 15 C 0.076 3.924 16 C -0.226 4.226 17 O -0.323 6.323 18 C -0.049 4.049 19 N -0.189 5.189 20 C 0.066 3.934 21 C -0.197 4.197 22 C -0.270 4.270 23 C -0.037 4.037 24 C -0.273 4.273 25 C 0.326 3.674 26 O -0.431 6.431 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.079 0.921 38 H 0.226 0.774 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.427 4.722 12.126 13.456 hybrid contribution 0.456 -0.281 -0.444 0.696 sum 3.883 4.441 11.681 13.086 Atomic orbital electron populations 1.22094 0.96699 1.01211 1.01997 1.21308 0.93490 0.84099 1.02623 1.48273 1.60630 1.13234 1.08238 1.20232 0.96637 0.95870 0.78659 1.21451 1.03491 1.26995 1.05614 0.92290 1.24930 0.97171 0.94875 0.96754 1.69955 1.36112 1.28709 1.17067 0.86563 0.83815 0.78395 0.79450 1.19696 1.20861 1.20806 1.20953 0.77696 0.89567 0.83830 1.90597 1.55859 1.66685 1.32811 1.21416 0.93605 0.87851 0.89555 1.22417 0.90742 1.02744 1.06705 1.86705 1.20364 1.71692 1.53565 1.22552 1.04622 0.79026 0.98744 1.45359 1.07792 1.09063 1.56682 1.20547 0.84687 0.96026 0.92136 1.21446 0.96912 0.96911 1.04429 1.20331 1.01027 0.90434 1.15216 1.21333 0.92511 0.99702 0.90134 1.22043 0.98259 0.95019 1.12007 1.17018 0.85037 0.86497 0.78891 1.90879 1.18300 1.82345 1.51565 0.93085 0.92352 0.92387 0.90368 0.90940 0.95467 0.88906 0.92616 0.91834 0.85427 0.92110 0.77434 0.87129 0.88167 0.88320 0.89274 0.89888 0.84143 0.85179 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.11 2.01 6.24 -4.05 -0.03 1.98 16 3 N -0.57 -11.99 2.46 -175.06 -0.43 -12.42 16 4 C 0.20 4.87 4.52 -5.19 -0.02 4.85 16 5 C -0.54 -13.64 6.93 -34.44 -0.24 -13.87 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.88 -24.39 13.29 55.43 0.74 -23.65 16 9 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.49 9.94 6.63 -10.99 -0.07 9.87 16 14 O -0.58 -12.15 15.47 5.55 0.09 -12.07 16 15 C 0.12 2.20 0.72 -91.77 -0.07 2.13 16 16 C -0.17 -3.07 6.84 37.16 0.25 -2.81 16 17 O -0.52 -10.40 8.41 -53.26 -0.45 -10.85 16 18 C 0.07 1.14 3.81 -4.04 -0.02 1.13 16 19 N -0.48 -7.10 2.28 -115.16 -0.26 -7.36 16 20 C 0.18 2.10 5.39 -81.88 -0.44 1.65 16 21 C -0.14 -1.29 8.15 36.01 0.29 -1.00 16 22 C -0.25 -2.58 9.63 -39.88 -0.38 -2.96 16 23 C -0.02 -0.17 10.10 -39.51 -0.40 -0.56 16 24 C -0.25 -3.48 9.99 -39.38 -0.39 -3.87 16 25 C 0.52 8.79 6.85 -15.45 -0.11 8.68 16 26 O -0.55 -10.82 14.82 -13.17 -0.20 -11.01 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 31 H 0.07 1.33 7.22 -51.93 -0.37 0.96 16 32 H 0.03 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.09 2.33 4.09 -51.77 -0.21 2.12 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.06 0.98 6.39 -51.93 -0.33 0.65 16 36 H 0.13 2.80 4.24 -51.93 -0.22 2.58 16 37 H 0.06 1.06 6.69 -51.93 -0.35 0.72 16 38 H 0.38 7.16 8.09 45.74 0.37 7.53 16 39 H 0.11 1.54 5.28 -51.93 -0.27 1.27 16 40 H 0.10 1.68 7.55 -51.93 -0.39 1.28 16 41 H 0.10 0.93 6.31 -51.93 -0.33 0.60 16 42 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 43 H 0.08 0.79 5.59 -51.93 -0.29 0.50 16 44 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 45 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 46 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -31.30 359.60 -7.20 -38.50 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -5.75 Total: 13.63 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.34 Total: 4.63 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.04 Total: -43.43 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.56 Total: -33.93 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.30 -7.20 -38.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279637774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.807 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds