Wall clock time and date at job start Fri Apr 10 2020 14:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47307 * 2 1 4 4 C 1.46505 * 119.99815 * 274.88399 * 3 2 1 5 5 C 1.50706 * 109.46851 * 276.76559 * 4 3 2 6 6 H 1.08001 * 119.99973 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00244 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99417 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00232 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46764 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47087 * 119.99764 * 9 7 5 12 12 H 1.48497 * 109.47178 * 240.00098 * 9 7 5 13 13 C 1.34769 * 120.00597 * 94.87558 * 3 2 1 14 14 O 1.21287 * 119.99715 * 5.71666 * 13 3 2 15 15 C 1.50694 * 120.00544 * 185.71376 * 13 3 2 16 16 C 1.53001 * 109.47364 * 286.34083 * 15 13 3 17 17 O 1.42904 * 109.47336 * 46.34396 * 15 13 3 18 18 C 1.53008 * 109.47354 * 166.34148 * 15 13 3 19 19 N 1.46497 * 109.46929 * 180.02562 * 18 15 13 20 20 C 1.35769 * 119.62451 * 264.71723 * 19 18 15 21 21 C 1.50704 * 119.64878 * 0.02562 * 20 19 18 22 22 C 1.35345 * 120.70227 * 179.69094 * 20 19 18 23 23 C 1.40194 * 119.94623 * 0.61469 * 22 20 19 24 24 C 1.36398 * 119.26915 * 359.41526 * 23 22 20 25 25 C 1.34658 * 119.62716 * 84.74285 * 19 18 15 26 26 O 1.22061 * 119.98309 * 359.97438 * 25 19 18 27 27 H 1.08999 * 109.47289 * 304.99630 * 1 2 3 28 28 H 1.09002 * 109.47154 * 65.00281 * 1 2 3 29 29 H 1.09003 * 109.47285 * 184.99985 * 1 2 3 30 30 H 1.09006 * 109.47299 * 239.99806 * 2 1 3 31 31 H 1.08994 * 109.47293 * 119.99911 * 2 1 3 32 32 H 1.08995 * 109.47306 * 36.75824 * 4 3 2 33 33 H 1.08994 * 109.47095 * 156.76677 * 4 3 2 34 34 H 0.96998 * 119.99709 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47343 * 295.51282 * 16 15 13 36 36 H 1.09005 * 109.46791 * 55.50735 * 16 15 13 37 37 H 1.08995 * 109.47222 * 175.50542 * 16 15 13 38 38 H 0.96695 * 113.99672 * 59.99548 * 17 15 13 39 39 H 1.09001 * 109.46735 * 60.00436 * 18 15 13 40 40 H 1.08991 * 109.46936 * 300.00017 * 18 15 13 41 41 H 1.08992 * 109.47090 * 93.95989 * 21 20 19 42 42 H 1.09000 * 109.46958 * 213.96554 * 21 20 19 43 43 H 1.09001 * 109.46852 * 333.96288 * 21 20 19 44 44 H 1.08006 * 120.02932 * 180.30910 * 22 20 19 45 45 H 1.08001 * 120.36930 * 179.69134 * 23 22 20 46 46 H 1.07997 * 120.35612 * 180.29807 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1607 2.1077 -1.2642 5 6 3.4799 1.7539 -1.9011 6 1 4.1458 1.0578 -1.4129 7 6 3.8372 2.3196 -3.1067 8 7 3.0265 3.1677 -3.7009 9 14 5.4727 1.8816 -3.8958 10 1 6.1951 0.9130 -3.0325 11 1 5.2319 1.2734 -5.2289 12 1 6.2914 3.1104 -4.0529 13 6 2.3365 1.9835 1.1628 14 8 2.3181 1.3516 2.1980 15 6 2.7152 3.4420 1.1771 16 6 4.1198 3.6100 0.5940 17 8 1.7811 4.1845 0.3908 18 6 2.6953 3.9601 2.6166 19 7 3.0629 5.3782 2.6303 20 6 4.3514 5.7352 2.8663 21 6 5.3878 4.6687 3.1106 22 6 4.7163 7.0385 2.8777 23 6 3.7562 8.0360 2.6570 24 6 2.4622 7.6755 2.4206 25 6 2.1190 6.3127 2.4093 26 8 0.9648 5.9760 2.1986 27 1 -0.3634 0.5894 0.8418 28 1 -0.3633 0.4343 -0.9314 29 1 -0.3634 -1.0238 0.0896 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3476 1.8317 -1.9355 33 1 2.1257 3.1802 -1.0728 34 1 3.2776 3.5654 -4.5492 35 1 4.8429 3.1100 1.2383 36 1 4.1547 3.1689 -0.4021 37 1 4.3623 4.6707 0.5304 38 1 0.8681 4.1236 0.7033 39 1 3.4079 3.3939 3.2164 40 1 1.6948 3.8405 3.0320 41 1 5.8827 4.4212 2.1716 42 1 6.1253 5.0356 3.8244 43 1 4.9047 3.7781 3.5125 44 1 5.7453 7.3101 3.0616 45 1 4.0389 9.0783 2.6696 46 1 1.7092 8.4292 2.2436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279637774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:35 Heat of formation + Delta-G solvation = -94.033195 kcal Electronic energy + Delta-G solvation = -29693.414804 eV Core-core repulsion = 25776.535536 eV Total energy + Delta-G solvation = -3916.879268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.72977 -41.17993 -38.24821 -38.02587 -37.11024 -35.42025 -34.72731 -32.74027 -32.57281 -31.55107 -29.07725 -28.32426 -28.01123 -25.52542 -24.96202 -23.90123 -23.43127 -22.07809 -20.39921 -19.19711 -18.52142 -18.32836 -17.85688 -17.70594 -17.10274 -16.83769 -16.49013 -16.45785 -15.78120 -15.49181 -15.31094 -14.91630 -14.67522 -14.56860 -14.47024 -14.20112 -14.00352 -13.59509 -13.52349 -13.33703 -13.19567 -13.11305 -12.96151 -12.89181 -12.70036 -12.68365 -12.57035 -12.31706 -12.23704 -12.13790 -11.85869 -11.74880 -11.39926 -11.08574 -10.85189 -10.62156 -10.17206 -9.47540 -8.79180 -8.15573 -6.27752 -0.03914 0.99447 1.40198 1.42340 1.49479 1.54218 1.56725 2.24451 2.43592 2.75030 3.06831 3.18731 3.43431 3.56420 3.59309 3.62172 3.95087 4.06463 4.16878 4.23455 4.31066 4.35858 4.49721 4.50784 4.56857 4.68231 4.71732 4.73638 4.77759 4.80675 4.94722 5.00514 5.07851 5.20265 5.21754 5.26486 5.41906 5.43014 5.54282 5.72296 5.76405 5.82952 6.11738 6.19512 6.43635 6.55563 6.86174 7.09023 7.17073 7.40349 8.90139 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.005291 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.612679 B = 5290.694430 C = 6362.657887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.102 3.898 3 N -0.581 5.581 4 C 0.223 3.777 5 C -0.534 4.534 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.278 1.278 13 C 0.492 3.508 14 O -0.585 6.585 15 C 0.121 3.879 16 C -0.160 4.160 17 O -0.533 6.533 18 C 0.084 3.916 19 N -0.481 5.481 20 C 0.156 3.844 21 C -0.140 4.140 22 C -0.236 4.236 23 C 0.008 3.992 24 C -0.288 4.288 25 C 0.502 3.498 26 O -0.600 6.600 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.001 0.999 33 H 0.081 0.919 34 H 0.265 0.735 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.376 0.624 39 H 0.132 0.868 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.078 0.922 44 H 0.182 0.818 45 H 0.170 0.830 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 5.431 13.550 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 N -0.310 5.310 4 C 0.103 3.897 5 C -0.572 4.572 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.557 5.557 9 Si 0.779 3.221 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.203 1.203 13 C 0.278 3.722 14 O -0.468 6.468 15 C 0.077 3.923 16 C -0.216 4.216 17 O -0.339 6.339 18 C -0.039 4.039 19 N -0.190 5.190 20 C 0.048 3.952 21 C -0.196 4.196 22 C -0.258 4.258 23 C -0.014 4.014 24 C -0.309 4.309 25 C 0.307 3.693 26 O -0.487 6.487 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.019 0.981 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.226 0.774 39 H 0.150 0.850 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.144 0.856 43 H 0.096 0.904 44 H 0.200 0.800 45 H 0.188 0.812 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.459 5.098 13.416 15.739 hybrid contribution -0.414 -0.380 -0.765 0.949 sum 6.046 4.719 12.651 14.794 Atomic orbital electron populations 1.22009 0.94859 1.03012 1.01123 1.21474 0.95054 0.82915 1.02585 1.48262 1.61103 1.14059 1.07571 1.19817 0.95200 0.95428 0.79263 1.21575 1.03703 1.26352 1.05594 0.92659 1.25659 1.00315 0.94749 0.97307 1.70075 1.38008 1.30051 1.17552 0.85575 0.79929 0.78257 0.78365 1.18862 1.20855 1.20343 1.21279 0.77200 0.90326 0.83349 1.90579 1.56228 1.67174 1.32787 1.21509 0.93209 0.86552 0.91048 1.22312 0.91231 1.02965 1.05141 1.86673 1.20718 1.71994 1.54536 1.22343 1.04482 0.80202 0.96889 1.45318 1.08915 1.08087 1.56686 1.21240 0.83824 0.97878 0.92263 1.21549 0.96698 0.96014 1.05334 1.20929 1.02751 0.89478 1.12647 1.21815 0.91009 1.01976 0.86574 1.22088 1.00156 0.93620 1.15078 1.17582 0.84869 0.87868 0.78964 1.90833 1.20215 1.83107 1.54534 0.93768 0.93336 0.89228 0.90717 0.90512 0.98075 0.90169 0.92638 0.89012 0.88971 0.91685 0.77448 0.85023 0.89906 0.88306 0.85628 0.90375 0.80031 0.81226 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 10.24 71.98 0.74 -4.15 16 2 C 0.10 3.81 6.24 86.38 0.54 4.35 16 3 N -0.58 -24.72 2.46 -826.17 -2.03 -26.75 16 4 C 0.22 10.97 4.52 85.63 0.39 11.36 16 5 C -0.53 -27.44 6.93 25.60 0.18 -27.26 16 6 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 7 C 0.02 1.05 5.46 84.65 0.46 1.52 16 8 N -0.92 -51.81 13.29 21.45 0.28 -51.53 16 9 Si 0.95 41.30 29.54 68.60 2.03 43.33 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 13 C 0.49 20.01 6.63 87.66 0.58 20.59 16 14 O -0.58 -24.45 15.47 -3.05 -0.05 -24.50 16 15 C 0.12 4.49 0.72 -11.54 -0.01 4.48 16 16 C -0.16 -5.69 6.84 71.98 0.49 -5.20 16 17 O -0.53 -22.54 8.41 -131.74 -1.11 -23.65 16 18 C 0.08 2.63 3.81 86.38 0.33 2.96 16 19 N -0.48 -14.02 2.28 -636.39 -1.45 -15.47 16 20 C 0.16 3.30 5.39 41.28 0.22 3.52 16 21 C -0.14 -2.05 8.15 71.24 0.58 -1.47 16 22 C -0.24 -3.94 9.63 22.08 0.21 -3.73 16 23 C 0.01 0.14 10.10 22.32 0.23 0.37 16 24 C -0.29 -7.86 9.99 22.40 0.22 -7.64 16 25 C 0.50 17.30 6.85 84.82 0.58 17.89 16 26 O -0.60 -25.21 14.82 11.72 0.17 -25.03 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.07 2.80 8.11 -2.38 -0.02 2.78 16 31 H 0.08 2.79 7.22 -2.39 -0.02 2.77 16 32 H 0.00 0.06 8.12 -2.39 -0.02 0.04 16 33 H 0.08 4.21 4.09 -2.28 -0.01 4.20 16 34 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.09 2.67 6.39 -2.39 -0.02 2.65 16 36 H 0.09 4.05 4.24 -2.38 -0.01 4.04 16 37 H 0.06 2.22 6.69 -2.39 -0.02 2.21 16 38 H 0.38 15.51 8.09 -73.77 -0.60 14.91 16 39 H 0.13 3.51 5.28 -2.39 -0.01 3.50 16 40 H 0.08 2.89 7.55 -2.39 -0.02 2.87 16 41 H 0.10 1.50 6.31 -2.39 -0.02 1.48 16 42 H 0.13 0.94 8.10 -2.39 -0.02 0.92 16 43 H 0.08 1.24 5.59 -2.39 -0.01 1.23 16 44 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 45 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -70.68 359.60 4.01 -66.67 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: 0.42 Total: 39.35 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 5.74 Total: 17.59 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -3.20 Total: -93.75 kcal Atomic # 8 Polarization: -72.20 SS G_CDS: -0.98 Total: -73.18 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -70.68 4.01 -66.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279637774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.361 kcal (2) G-P(sol) polarization free energy of solvation -70.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds