Wall clock time and date at job start Fri Apr 10 2020 14:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47352 * 2 1 4 4 C 1.46501 * 119.99782 * 274.70575 * 3 2 1 5 5 C 1.50701 * 109.47155 * 269.99369 * 4 3 2 6 6 H 1.08009 * 120.00055 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00324 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00005 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00024 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47055 * 89.99645 * 9 7 5 11 11 H 1.48498 * 109.47316 * 209.99978 * 9 7 5 12 12 H 1.48501 * 109.46824 * 329.99954 * 9 7 5 13 13 C 1.34772 * 120.00277 * 94.70006 * 3 2 1 14 14 O 1.21284 * 119.99919 * 5.01341 * 13 3 2 15 15 C 1.50697 * 120.00361 * 185.01160 * 13 3 2 16 16 C 1.53004 * 109.47273 * 78.51358 * 15 13 3 17 17 O 1.42902 * 109.47002 * 318.51530 * 15 13 3 18 18 C 1.52997 * 109.47405 * 198.51234 * 15 13 3 19 19 N 1.46506 * 109.47479 * 184.99754 * 18 15 13 20 20 C 1.35763 * 119.62407 * 271.75015 * 19 18 15 21 21 C 1.50701 * 119.65226 * 359.97438 * 20 19 18 22 22 C 1.35356 * 120.69874 * 179.68177 * 20 19 18 23 23 C 1.40196 * 119.94334 * 0.61981 * 22 20 19 24 24 C 1.36396 * 119.26882 * 359.40863 * 23 22 20 25 25 C 1.34655 * 119.62261 * 91.76505 * 19 18 15 26 26 O 1.22065 * 119.98571 * 359.97438 * 25 19 18 27 27 H 1.09005 * 109.46934 * 304.99539 * 1 2 3 28 28 H 1.08998 * 109.46897 * 64.99259 * 1 2 3 29 29 H 1.08997 * 109.47261 * 184.99367 * 1 2 3 30 30 H 1.09003 * 109.47405 * 240.00127 * 2 1 3 31 31 H 1.08998 * 109.47468 * 120.00124 * 2 1 3 32 32 H 1.08996 * 109.47564 * 29.99779 * 4 3 2 33 33 H 1.08996 * 109.47152 * 150.00088 * 4 3 2 34 34 H 0.97001 * 119.99597 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47370 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.47028 * 300.00304 * 16 15 13 37 37 H 1.08998 * 109.46641 * 59.99992 * 16 15 13 38 38 H 0.96698 * 113.99863 * 295.04245 * 17 15 13 39 39 H 1.09005 * 109.47063 * 64.99943 * 18 15 13 40 40 H 1.08999 * 109.47547 * 305.00063 * 18 15 13 41 41 H 1.08992 * 109.47177 * 92.67483 * 21 20 19 42 42 H 1.08997 * 109.46899 * 212.68210 * 21 20 19 43 43 H 1.09002 * 109.46487 * 332.67511 * 21 20 19 44 44 H 1.07995 * 120.02716 * 180.30415 * 22 20 19 45 45 H 1.07999 * 120.36085 * 179.69031 * 23 22 20 46 46 H 1.08004 * 120.34902 * 180.25776 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1644 2.1065 -1.2645 5 6 3.5496 1.8832 -1.8146 6 1 4.2509 1.2627 -1.2763 7 6 3.9217 2.4710 -3.0049 8 7 5.1304 2.2757 -3.4852 9 14 2.7091 3.5447 -3.9356 10 1 2.8466 4.9527 -3.4840 11 1 2.9905 3.4620 -5.3913 12 1 1.3260 3.0730 -3.6713 13 6 2.3332 1.9847 1.1632 14 8 2.2994 1.3572 2.2005 15 6 2.7272 3.4392 1.1750 16 6 1.4724 4.3084 1.0710 17 8 3.5868 3.7089 0.0658 18 6 3.4617 3.7581 2.4787 19 7 3.7395 5.1951 2.5440 20 6 4.8849 5.6825 2.0021 21 6 5.8569 4.7397 1.3407 22 6 5.1603 7.0071 2.0445 23 6 4.2637 7.8888 2.6643 24 6 3.1137 7.3972 3.2084 25 6 2.8559 6.0173 3.1410 26 8 1.8303 5.5640 3.6234 27 1 -0.3633 0.5894 0.8419 28 1 -0.3633 0.4344 -0.9313 29 1 -0.3634 -1.0237 0.0895 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.4265 1.7426 -1.9794 33 1 2.0092 3.1715 -1.0925 34 1 5.3922 2.6896 -4.3225 35 1 1.7574 5.3605 1.0791 36 1 0.9490 4.0813 0.1422 37 1 0.8168 4.1027 1.9171 38 1 4.4364 3.2490 0.1057 39 1 4.4003 3.2048 2.5117 40 1 2.8399 3.4694 3.3262 41 1 5.6391 4.6826 0.2743 42 1 6.8734 5.1057 1.4850 43 1 5.7611 3.7488 1.7847 44 1 6.0724 7.3837 1.6057 45 1 4.4791 8.9462 2.7063 46 1 2.4087 8.0613 3.6864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279637776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:40 Heat of formation + Delta-G solvation = -69.845127 kcal Electronic energy + Delta-G solvation = -29920.768478 eV Core-core repulsion = 26004.938084 eV Total energy + Delta-G solvation = -3915.830395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64019 -39.71854 -37.13565 -36.58337 -35.56124 -34.13863 -32.64982 -31.97969 -30.93884 -30.26875 -27.65275 -27.44618 -27.03022 -24.17698 -22.84108 -22.57211 -22.43052 -20.78452 -18.76230 -17.81773 -17.29755 -17.06001 -16.62994 -16.36719 -15.82544 -15.64926 -15.02646 -14.69007 -14.36857 -14.12869 -13.99521 -13.59457 -13.41155 -13.38038 -13.10391 -12.88213 -12.51573 -12.37131 -12.32652 -12.11058 -11.94558 -11.84481 -11.76820 -11.54794 -11.50463 -11.31656 -11.17786 -10.90686 -10.71767 -10.55760 -10.28234 -10.24512 -9.86797 -9.70044 -9.60113 -8.75549 -8.63612 -7.83042 -7.75899 -6.19887 -4.17408 0.92142 1.97066 2.65879 3.06874 3.23354 3.29099 3.32603 3.62845 3.81699 4.32263 4.44653 4.56313 4.66939 4.74842 4.85411 5.00205 5.14611 5.15994 5.20810 5.34507 5.44039 5.51336 5.53514 5.65162 5.70664 5.77070 5.79765 5.97111 5.99010 6.06284 6.11802 6.16017 6.18531 6.29457 6.33648 6.40199 6.51788 6.54087 6.62056 6.88315 7.23106 7.31249 7.50618 7.97500 8.09607 8.17775 8.39256 8.71603 8.80591 9.42223 10.92221 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011972 B = 0.005890 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.284541 B = 4753.042443 C = 6033.661532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 N -0.575 5.575 4 C 0.204 3.796 5 C -0.519 4.519 6 H 0.073 0.927 7 C 0.081 3.919 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.269 1.269 13 C 0.498 3.502 14 O -0.567 6.567 15 C 0.110 3.890 16 C -0.131 4.131 17 O -0.514 6.514 18 C 0.071 3.929 19 N -0.480 5.480 20 C 0.192 3.808 21 C -0.141 4.141 22 C -0.251 4.251 23 C -0.008 4.008 24 C -0.264 4.264 25 C 0.515 3.485 26 O -0.552 6.552 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.022 0.978 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.382 0.618 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.142 0.858 45 H 0.130 0.870 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 6.923 8.197 10.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.014 4.014 3 N -0.304 5.304 4 C 0.083 3.917 5 C -0.557 4.557 6 H 0.091 0.909 7 C -0.122 4.122 8 N -0.536 5.536 9 Si 0.700 3.300 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.194 1.194 13 C 0.283 3.717 14 O -0.448 6.448 15 C 0.065 3.935 16 C -0.188 4.188 17 O -0.323 6.323 18 C -0.051 4.051 19 N -0.190 5.190 20 C 0.082 3.918 21 C -0.198 4.198 22 C -0.274 4.274 23 C -0.029 4.029 24 C -0.286 4.286 25 C 0.318 3.682 26 O -0.435 6.435 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.234 0.766 39 H 0.117 0.883 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.160 0.840 45 H 0.148 0.852 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.831 6.668 8.672 10.970 hybrid contribution 0.006 0.339 -0.696 0.775 sum -0.825 7.007 7.975 10.648 Atomic orbital electron populations 1.22119 0.96703 1.01485 1.01882 1.21339 0.93419 0.83624 1.03029 1.47954 1.61578 1.13357 1.07556 1.20109 0.97910 0.93335 0.80332 1.21154 0.96835 1.31002 1.06697 0.90883 1.24719 0.94888 0.95724 0.96823 1.69885 1.18379 1.44373 1.20917 0.86906 0.82080 0.81887 0.79118 1.19779 1.21504 1.19374 1.20939 0.77743 0.89262 0.83716 1.90627 1.55437 1.66345 1.32409 1.21451 0.93164 0.92133 0.86758 1.21793 0.94736 0.99106 1.03158 1.86901 1.31407 1.72139 1.41834 1.22551 1.02881 0.78624 1.01056 1.45400 1.17523 1.09807 1.46265 1.20605 0.86156 0.95031 0.90027 1.21436 0.97388 0.97961 1.02997 1.20356 1.04354 0.91062 1.11627 1.21359 0.91742 0.99908 0.89933 1.21993 1.01395 0.94255 1.10961 1.17100 0.83612 0.87659 0.79836 1.90951 1.25614 1.77542 1.49442 0.92868 0.92637 0.92131 0.90213 0.90535 0.95991 0.92634 0.92593 0.91773 0.91255 0.90272 0.76594 0.88317 0.86330 0.86965 0.89209 0.90423 0.84033 0.85193 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.24 37.16 0.38 -2.09 16 2 C 0.11 1.92 6.22 -4.04 -0.03 1.89 16 3 N -0.58 -11.33 2.46 -175.06 -0.43 -11.76 16 4 C 0.20 4.37 3.72 -5.19 -0.02 4.35 16 5 C -0.52 -12.59 7.60 -34.44 -0.26 -12.85 16 6 H 0.07 1.95 8.06 -52.48 -0.42 1.53 16 7 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -24.52 13.96 55.43 0.77 -23.74 16 9 Si 0.87 19.91 27.47 -169.99 -4.67 15.24 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 13 C 0.50 9.72 6.66 -10.99 -0.07 9.64 16 14 O -0.57 -12.00 15.40 5.55 0.09 -11.92 16 15 C 0.11 1.92 0.73 -91.77 -0.07 1.85 16 16 C -0.13 -2.31 7.28 37.16 0.27 -2.04 16 17 O -0.51 -9.26 7.02 -35.23 -0.25 -9.50 16 18 C 0.07 1.12 3.93 -4.04 -0.02 1.10 16 19 N -0.48 -7.05 2.23 -115.16 -0.26 -7.31 16 20 C 0.19 2.38 6.33 -81.88 -0.52 1.86 16 21 C -0.14 -1.50 7.98 36.01 0.29 -1.22 16 22 C -0.25 -2.73 9.63 -39.87 -0.38 -3.11 16 23 C -0.01 -0.08 10.10 -39.51 -0.40 -0.48 16 24 C -0.26 -3.50 9.99 -39.38 -0.39 -3.89 16 25 C 0.52 8.35 5.73 -15.45 -0.09 8.26 16 26 O -0.55 -10.66 14.99 4.86 0.07 -10.58 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 31 H 0.08 1.36 7.23 -51.93 -0.38 0.99 16 32 H 0.02 0.49 7.13 -51.93 -0.37 0.11 16 33 H 0.06 1.20 3.62 -51.93 -0.19 1.02 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.06 1.14 6.35 -51.93 -0.33 0.81 16 36 H 0.07 1.23 6.57 -51.93 -0.34 0.89 16 37 H 0.08 1.44 7.50 -51.93 -0.39 1.05 16 38 H 0.38 6.62 6.03 45.56 0.27 6.89 16 39 H 0.10 1.36 5.78 -51.93 -0.30 1.06 16 40 H 0.12 2.08 6.92 -51.93 -0.36 1.72 16 41 H 0.11 1.37 6.43 -51.93 -0.33 1.04 16 42 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 43 H 0.08 0.81 5.51 -51.93 -0.29 0.52 16 44 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 46 H 0.14 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -30.71 356.11 -6.68 -37.39 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.97 Total: 11.57 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -1.41 Total: 5.26 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.09 Total: -42.81 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.09 Total: -32.01 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.67 Total: 15.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.71 -6.68 -37.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279637776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.459 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds