Wall clock time and date at job start Fri Apr 10 2020 14:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47188 * 2 1 4 4 C 1.50693 * 109.47167 * 239.99218 * 2 1 3 5 5 O 1.21283 * 120.00111 * 246.67522 * 4 2 1 6 6 N 1.34780 * 120.00099 * 66.67594 * 4 2 1 7 7 C 1.46495 * 119.99704 * 4.59048 * 6 4 2 8 8 C 1.46499 * 120.00050 * 184.59481 * 6 4 2 9 9 C 1.50698 * 109.47236 * 90.00021 * 8 6 4 10 10 H 1.07999 * 120.00061 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99912 * 179.97438 * 9 8 6 12 12 N 1.31512 * 120.00077 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99986 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47010 * 89.99822 * 13 11 9 15 15 H 1.48499 * 109.47168 * 209.99999 * 13 11 9 16 16 H 1.48496 * 109.47169 * 330.00331 * 13 11 9 17 17 N 1.46498 * 109.46463 * 119.99390 * 2 1 3 18 18 C 1.36052 * 123.28484 * 59.71201 * 17 2 1 19 19 O 1.21225 * 126.99940 * 347.26110 * 18 17 2 20 20 C 1.49723 * 105.93627 * 167.15259 * 18 17 2 21 21 H 1.09001 * 110.17417 * 275.50970 * 20 18 17 22 22 C 1.51316 * 119.28723 * 146.18159 * 20 18 17 23 23 C 1.54191 * 106.18191 * 181.83680 * 22 20 18 24 24 C 1.52469 * 111.87759 * 57.50698 * 23 22 20 25 25 C 1.53985 * 112.11717 * 306.95111 * 24 23 22 26 26 C 1.51040 * 106.70981 * 56.35130 * 25 24 23 27 27 H 1.08995 * 110.08006 * 53.56359 * 26 25 24 28 28 C 1.36065 * 123.28373 * 239.99589 * 17 2 1 29 29 O 1.21216 * 127.00787 * 347.31520 * 28 17 2 30 30 H 1.09006 * 109.46832 * 68.79389 * 1 2 3 31 31 H 1.08997 * 109.47152 * 188.79129 * 1 2 3 32 32 H 1.09003 * 109.47351 * 308.79894 * 1 2 3 33 33 H 1.09006 * 109.47353 * 87.36960 * 7 6 4 34 34 H 1.09001 * 109.47241 * 207.36625 * 7 6 4 35 35 H 1.08998 * 109.47656 * 327.36945 * 7 6 4 36 36 H 1.08999 * 109.47085 * 209.99863 * 8 6 4 37 37 H 1.08999 * 109.47330 * 329.99916 * 8 6 4 38 38 H 0.96998 * 119.99971 * 180.02562 * 12 11 9 39 39 H 1.09000 * 110.10544 * 301.00742 * 22 20 18 40 40 H 1.09007 * 110.10062 * 62.55478 * 22 20 18 41 41 H 1.09002 * 108.99523 * 178.12500 * 23 22 20 42 42 H 1.09004 * 108.99766 * 296.88468 * 23 22 20 43 43 H 1.08994 * 108.95331 * 67.63307 * 24 23 22 44 44 H 1.09001 * 108.94995 * 186.27992 * 24 23 22 45 45 H 1.08998 * 110.00324 * 297.05725 * 25 24 23 46 46 H 1.08999 * 110.00658 * 175.64934 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.6266 -1.7624 -1.1230 6 7 1.8213 -0.1772 -2.4500 7 6 1.1934 1.1405 -2.5744 8 6 2.2197 -0.9152 -3.6511 9 6 1.0761 -1.7827 -4.1101 10 1 0.1457 -1.7844 -3.5617 11 6 1.2176 -2.5741 -5.2302 12 7 2.3504 -2.5716 -5.8983 13 14 -0.1997 -3.6499 -5.7988 14 1 -1.0492 -2.8880 -6.7491 15 1 0.3365 -4.8590 -6.4740 16 1 -1.0131 -4.0579 -4.6254 17 7 2.0182 -0.6905 1.1963 18 6 1.7262 -1.9885 1.4806 19 8 0.8863 -2.6811 0.9471 20 6 2.6559 -2.3868 2.5845 21 1 3.6149 -2.7018 2.1731 22 6 2.1814 -3.3683 3.6339 23 6 3.3447 -3.5239 4.6339 24 6 3.7521 -2.1873 5.2440 25 6 4.0499 -1.1260 4.1688 26 6 2.8116 -1.0175 3.3109 27 1 1.9388 -0.8283 3.9358 28 6 2.8033 -0.0946 2.1343 29 8 3.3791 0.9675 2.0359 30 1 -0.3633 0.3718 -0.9581 31 1 -0.3633 -1.0156 0.1571 32 1 -0.3634 0.6439 0.8009 33 1 1.9595 1.9143 -2.5242 34 1 0.6728 1.2061 -3.5298 35 1 0.4807 1.2817 -1.7619 36 1 2.4808 -0.2105 -4.4406 37 1 3.0822 -1.5416 -3.4233 38 1 2.4498 -3.1281 -6.6865 39 1 1.3003 -2.9767 4.1421 40 1 1.9511 -4.3284 3.1720 41 1 3.0382 -4.1998 5.4323 42 1 4.2023 -3.9540 4.1165 43 1 2.9443 -1.8283 5.8817 44 1 4.6439 -2.3335 5.8535 45 1 4.8985 -1.4392 3.5607 46 1 4.2619 -0.1665 4.6406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298752047.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:53 Heat of formation + Delta-G solvation = -90.795508 kcal Electronic energy + Delta-G solvation = -28928.710615 eV Core-core repulsion = 25011.971744 eV Total energy + Delta-G solvation = -3916.738871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.27663 -39.29352 -38.43500 -37.73048 -35.63009 -34.92401 -33.30347 -32.37092 -31.26208 -29.89629 -27.68479 -26.16987 -25.28657 -24.73477 -23.51700 -22.13288 -21.89420 -20.53237 -19.59820 -18.51715 -17.50761 -16.82084 -16.51200 -16.13095 -15.84710 -15.58430 -15.09255 -14.87934 -14.71727 -14.59125 -14.21288 -13.99955 -13.77571 -13.52044 -13.46434 -13.11356 -12.90924 -12.63055 -12.48246 -12.06818 -12.02784 -11.73853 -11.66457 -11.53248 -11.45771 -11.38803 -11.15944 -10.98596 -10.88637 -10.72955 -10.56748 -10.16373 -10.02218 -9.91413 -9.69661 -9.62741 -8.82371 -8.43356 -7.69951 -6.04259 -4.09064 1.63176 2.40365 2.66554 3.24086 3.31042 3.37827 3.44191 3.62753 3.91331 4.10951 4.17283 4.44864 4.57102 4.73316 4.75041 4.86032 4.88879 4.95890 4.99572 5.04392 5.08116 5.11980 5.29171 5.33217 5.40833 5.49707 5.52995 5.65912 5.69416 5.71996 5.75697 5.79094 5.88087 5.92360 5.92635 6.03603 6.11850 6.30545 6.83339 6.99684 7.35420 7.41495 7.48857 7.88661 7.92583 8.22012 8.31654 8.84701 9.00191 9.55965 11.03912 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.003711 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.759089 B = 7543.293917 C = 8269.467718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 H 0.118 0.882 4 C 0.501 3.499 5 O -0.530 6.530 6 N -0.595 5.595 7 C 0.066 3.934 8 C 0.246 3.754 9 C -0.527 4.527 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.273 1.273 17 N -0.576 5.576 18 C 0.552 3.448 19 O -0.449 6.449 20 C -0.129 4.129 21 H 0.124 0.876 22 C -0.097 4.097 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.097 4.097 26 C -0.131 4.131 27 H 0.121 0.879 28 C 0.545 3.455 29 O -0.478 6.478 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 5.245 22.529 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 H 0.135 0.865 4 C 0.286 3.714 5 O -0.407 6.407 6 N -0.327 5.327 7 C -0.078 4.078 8 C 0.127 3.873 9 C -0.565 4.565 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 N -0.321 5.321 18 C 0.341 3.659 19 O -0.317 6.317 20 C -0.150 4.150 21 H 0.142 0.858 22 C -0.135 4.135 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.135 4.135 26 C -0.153 4.153 27 H 0.139 0.861 28 C 0.334 3.666 29 O -0.349 6.349 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.007 4.797 22.008 22.524 hybrid contribution -0.766 -0.411 -0.750 1.148 sum -0.774 4.386 21.257 21.719 Atomic orbital electron populations 1.22337 0.91687 1.04992 1.03825 1.21281 0.96749 0.97616 0.84004 0.86453 1.20179 0.80832 0.85931 0.84486 1.90667 1.41564 1.22636 1.85814 1.48046 1.59130 1.18558 1.07004 1.22008 0.97563 0.84638 1.03551 1.19330 0.96782 0.91455 0.79684 1.21423 0.99526 1.24867 1.10727 0.92374 1.24931 0.96052 0.96697 0.96384 1.69934 1.24504 1.40248 1.18690 0.86489 0.82173 0.80035 0.78733 1.20610 1.21057 1.19788 1.47701 1.47680 1.14506 1.22227 1.20386 0.82458 0.80072 0.83034 1.90747 1.31929 1.55655 1.53368 1.22217 1.01404 0.96598 0.94799 0.85798 1.21293 0.98310 0.99286 0.94570 1.21645 0.98208 0.97314 0.98660 1.21583 1.01823 0.94613 0.97538 1.21191 0.95343 1.00127 0.96814 1.22080 1.03474 0.93778 0.95920 0.86140 1.20600 0.75865 0.85508 0.84583 1.90731 1.41314 1.21913 1.80915 0.89048 0.89780 0.91563 0.93437 0.90241 0.91457 0.94800 0.93796 0.92707 0.90860 0.89961 0.91228 0.91507 0.91743 0.91224 0.90652 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 8.86 37.16 0.33 -2.12 16 2 C 0.11 1.81 2.37 -69.08 -0.16 1.65 16 3 H 0.12 1.73 7.29 -51.93 -0.38 1.35 16 4 C 0.50 10.97 6.88 -10.99 -0.08 10.89 16 5 O -0.53 -13.79 14.53 -1.11 -0.02 -13.81 16 6 N -0.60 -13.01 2.86 -182.96 -0.52 -13.53 16 7 C 0.07 1.06 9.80 59.84 0.59 1.64 16 8 C 0.25 6.60 5.18 -5.20 -0.03 6.57 16 9 C -0.53 -15.23 9.39 -34.44 -0.32 -15.55 16 10 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 13 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 17 N -0.58 -8.99 2.41 -109.62 -0.26 -9.26 16 18 C 0.55 8.85 6.07 -10.88 -0.07 8.78 16 19 O -0.45 -8.86 15.67 -1.06 -0.02 -8.88 16 20 C -0.13 -1.46 2.42 -91.61 -0.22 -1.69 16 21 H 0.12 1.45 7.85 -51.93 -0.41 1.04 16 22 C -0.10 -0.83 5.86 -26.96 -0.16 -0.99 16 23 C -0.12 -0.78 5.80 -26.38 -0.15 -0.93 16 24 C -0.12 -0.68 5.81 -26.49 -0.15 -0.84 16 25 C -0.10 -0.74 5.84 -27.20 -0.16 -0.90 16 26 C -0.13 -1.27 2.36 -91.83 -0.22 -1.49 16 27 H 0.12 0.92 7.81 -51.93 -0.41 0.51 16 28 C 0.55 7.46 7.74 -10.96 -0.08 7.37 16 29 O -0.48 -7.59 17.52 5.61 0.10 -7.49 16 30 H 0.09 1.26 5.30 -51.93 -0.28 0.98 16 31 H 0.08 1.41 6.22 -51.93 -0.32 1.09 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 35 H 0.07 0.88 4.18 -51.93 -0.22 0.67 16 36 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 37 H 0.04 1.33 7.36 -51.93 -0.38 0.95 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.61 7.94 -51.93 -0.41 0.20 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 366.19 15.07 5.52 5.52 Total: -1.00 -36.61 366.19 -7.45 -44.06 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.98 Total: -1.75 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: -0.98 Total: 14.12 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.05 Total: -49.05 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: 0.07 Total: -30.18 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.61 -7.45 -44.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298752047.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.737 kcal (2) G-P(sol) polarization free energy of solvation -36.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds