Wall clock time and date at job start Fri Apr 10 2020 14:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47188 * 2 1 4 4 C 1.50693 * 109.47167 * 239.99218 * 2 1 3 5 5 O 1.21283 * 120.00111 * 246.67522 * 4 2 1 6 6 N 1.34780 * 120.00099 * 66.67594 * 4 2 1 7 7 C 1.46495 * 119.99704 * 4.59048 * 6 4 2 8 8 C 1.46499 * 120.00050 * 184.59481 * 6 4 2 9 9 C 1.50698 * 109.47236 * 90.00021 * 8 6 4 10 10 H 1.07999 * 120.00061 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99912 * 179.97438 * 9 8 6 12 12 N 1.31512 * 120.00077 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99986 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47010 * 89.99822 * 13 11 9 15 15 H 1.48499 * 109.47168 * 209.99999 * 13 11 9 16 16 H 1.48496 * 109.47169 * 330.00331 * 13 11 9 17 17 N 1.46498 * 109.46463 * 119.99390 * 2 1 3 18 18 C 1.36052 * 123.28484 * 59.71201 * 17 2 1 19 19 O 1.21225 * 126.99940 * 347.26110 * 18 17 2 20 20 C 1.49723 * 105.93627 * 167.15259 * 18 17 2 21 21 H 1.09001 * 110.17417 * 275.50970 * 20 18 17 22 22 C 1.51316 * 119.28723 * 146.18159 * 20 18 17 23 23 C 1.54191 * 106.18191 * 181.83680 * 22 20 18 24 24 C 1.52469 * 111.87759 * 57.50698 * 23 22 20 25 25 C 1.53985 * 112.11717 * 306.95111 * 24 23 22 26 26 C 1.51040 * 106.70981 * 56.35130 * 25 24 23 27 27 H 1.08995 * 110.08006 * 53.56359 * 26 25 24 28 28 C 1.36065 * 123.28373 * 239.99589 * 17 2 1 29 29 O 1.21216 * 127.00787 * 347.31520 * 28 17 2 30 30 H 1.09006 * 109.46832 * 68.79389 * 1 2 3 31 31 H 1.08997 * 109.47152 * 188.79129 * 1 2 3 32 32 H 1.09003 * 109.47351 * 308.79894 * 1 2 3 33 33 H 1.09006 * 109.47353 * 87.36960 * 7 6 4 34 34 H 1.09001 * 109.47241 * 207.36625 * 7 6 4 35 35 H 1.08998 * 109.47656 * 327.36945 * 7 6 4 36 36 H 1.08999 * 109.47085 * 209.99863 * 8 6 4 37 37 H 1.08999 * 109.47330 * 329.99916 * 8 6 4 38 38 H 0.96998 * 119.99971 * 180.02562 * 12 11 9 39 39 H 1.09000 * 110.10544 * 301.00742 * 22 20 18 40 40 H 1.09007 * 110.10062 * 62.55478 * 22 20 18 41 41 H 1.09002 * 108.99523 * 178.12500 * 23 22 20 42 42 H 1.09004 * 108.99766 * 296.88468 * 23 22 20 43 43 H 1.08994 * 108.95331 * 67.63307 * 24 23 22 44 44 H 1.09001 * 108.94995 * 186.27992 * 24 23 22 45 45 H 1.08998 * 110.00324 * 297.05725 * 25 24 23 46 46 H 1.08999 * 110.00658 * 175.64934 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.6266 -1.7624 -1.1230 6 7 1.8213 -0.1772 -2.4500 7 6 1.1934 1.1405 -2.5744 8 6 2.2197 -0.9152 -3.6511 9 6 1.0761 -1.7827 -4.1101 10 1 0.1457 -1.7844 -3.5617 11 6 1.2176 -2.5741 -5.2302 12 7 2.3504 -2.5716 -5.8983 13 14 -0.1997 -3.6499 -5.7988 14 1 -1.0492 -2.8880 -6.7491 15 1 0.3365 -4.8590 -6.4740 16 1 -1.0131 -4.0579 -4.6254 17 7 2.0182 -0.6905 1.1963 18 6 1.7262 -1.9885 1.4806 19 8 0.8863 -2.6811 0.9471 20 6 2.6559 -2.3868 2.5845 21 1 3.6149 -2.7018 2.1731 22 6 2.1814 -3.3683 3.6339 23 6 3.3447 -3.5239 4.6339 24 6 3.7521 -2.1873 5.2440 25 6 4.0499 -1.1260 4.1688 26 6 2.8116 -1.0175 3.3109 27 1 1.9388 -0.8283 3.9358 28 6 2.8033 -0.0946 2.1343 29 8 3.3791 0.9675 2.0359 30 1 -0.3633 0.3718 -0.9581 31 1 -0.3633 -1.0156 0.1571 32 1 -0.3634 0.6439 0.8009 33 1 1.9595 1.9143 -2.5242 34 1 0.6728 1.2061 -3.5298 35 1 0.4807 1.2817 -1.7619 36 1 2.4808 -0.2105 -4.4406 37 1 3.0822 -1.5416 -3.4233 38 1 2.4498 -3.1281 -6.6865 39 1 1.3003 -2.9767 4.1421 40 1 1.9511 -4.3284 3.1720 41 1 3.0382 -4.1998 5.4323 42 1 4.2023 -3.9540 4.1165 43 1 2.9443 -1.8283 5.8817 44 1 4.6439 -2.3335 5.8535 45 1 4.8985 -1.4392 3.5607 46 1 4.2619 -0.1665 4.6406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298752047.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:52 Heat of formation + Delta-G solvation = -115.448851 kcal Electronic energy + Delta-G solvation = -28929.779664 eV Core-core repulsion = 25011.971744 eV Total energy + Delta-G solvation = -3917.807920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.38293 -40.85856 -39.66755 -38.69701 -36.95803 -36.71650 -35.00404 -33.96216 -31.94336 -30.95707 -29.58882 -27.70168 -26.29312 -26.08860 -25.09334 -23.34402 -22.90964 -21.18191 -20.90086 -19.92842 -18.75450 -18.71210 -18.18063 -17.53035 -17.10249 -16.82816 -16.53321 -16.30178 -15.99964 -15.93787 -15.58631 -14.95882 -14.81980 -14.71029 -14.52858 -14.38094 -14.25268 -13.85563 -13.67850 -13.48792 -13.41513 -13.22651 -13.05335 -13.03571 -12.69970 -12.48534 -12.41321 -12.26769 -12.24824 -12.06437 -11.78363 -11.65125 -11.38076 -11.28510 -10.93766 -10.82799 -10.68978 -10.43374 -9.54451 -8.27956 -6.42904 0.48384 1.19847 1.32085 1.35869 1.45905 1.53718 1.57891 2.22737 2.36884 2.77381 3.01754 3.24298 3.26021 3.41168 3.75180 3.78019 3.88663 4.04062 4.08225 4.12213 4.18554 4.25371 4.32564 4.42361 4.46177 4.55872 4.61503 4.67358 4.81372 4.84616 4.86598 4.91453 5.09703 5.11602 5.14305 5.15942 5.21929 5.32106 5.37741 5.46926 5.53667 5.66625 5.74122 5.98734 6.22531 6.53007 6.66196 6.71499 7.15821 7.31313 8.79551 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.003711 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.759089 B = 7543.293917 C = 8269.467718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 H 0.141 0.859 4 C 0.488 3.512 5 O -0.585 6.585 6 N -0.602 5.602 7 C 0.059 3.941 8 C 0.262 3.738 9 C -0.544 4.544 10 H 0.052 0.948 11 C 0.009 3.991 12 N -0.927 5.927 13 Si 0.968 3.032 14 H -0.259 1.259 15 H -0.279 1.279 16 H -0.276 1.276 17 N -0.584 5.584 18 C 0.543 3.457 19 O -0.497 6.497 20 C -0.125 4.125 21 H 0.115 0.885 22 C -0.094 4.094 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.097 4.097 26 C -0.114 4.114 27 H 0.152 0.848 28 C 0.543 3.457 29 O -0.500 6.500 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.028 0.972 37 H -0.005 1.005 38 H 0.268 0.732 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 6.288 25.120 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.009 3.991 3 H 0.159 0.841 4 C 0.275 3.725 5 O -0.466 6.466 6 N -0.333 5.333 7 C -0.082 4.082 8 C 0.141 3.859 9 C -0.583 4.583 10 H 0.070 0.930 11 C -0.190 4.190 12 N -0.567 5.567 13 Si 0.792 3.208 14 H -0.183 1.183 15 H -0.204 1.204 16 H -0.201 1.201 17 N -0.329 5.329 18 C 0.334 3.666 19 O -0.368 6.368 20 C -0.147 4.147 21 H 0.133 0.867 22 C -0.132 4.132 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.134 4.134 26 C -0.135 4.135 27 H 0.169 0.831 28 C 0.335 3.665 29 O -0.372 6.372 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.046 0.954 37 H 0.013 0.987 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.308 5.903 24.623 25.354 hybrid contribution -0.293 -0.694 -1.594 1.763 sum -1.601 5.209 23.028 23.664 Atomic orbital electron populations 1.22310 0.89670 1.04313 1.05672 1.21277 0.98149 0.97746 0.81905 0.84124 1.21229 0.79790 0.85585 0.85909 1.90626 1.43897 1.25229 1.86826 1.48064 1.59279 1.20210 1.05783 1.22339 0.98850 0.82107 1.04891 1.18783 0.94707 0.91003 0.81456 1.21660 0.99722 1.25799 1.11076 0.92969 1.25861 0.98852 0.97929 0.96407 1.70049 1.26450 1.41025 1.19151 0.85410 0.78816 0.78265 0.78309 1.18320 1.20437 1.20145 1.47963 1.47997 1.14849 1.22097 1.21235 0.82077 0.79861 0.83426 1.90709 1.34162 1.56659 1.55257 1.22275 0.99528 0.98764 0.94086 0.86705 1.21363 0.99941 0.97756 0.94127 1.21642 0.96946 0.98376 0.98436 1.21563 1.03208 0.93199 0.96898 1.21277 0.93802 1.01508 0.96854 1.22192 1.05972 0.90639 0.94674 0.83054 1.21308 0.74573 0.85513 0.85138 1.90718 1.41957 1.23113 1.81438 0.88519 0.92485 0.87471 0.90847 0.90497 0.88017 0.95389 0.98696 0.92295 0.89202 0.91407 0.89374 0.92145 0.89940 0.89710 0.91684 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 8.86 71.98 0.64 -3.78 16 2 C 0.12 3.76 2.37 44.24 0.11 3.87 16 3 H 0.14 3.89 7.29 -2.39 -0.02 3.87 16 4 C 0.49 22.09 6.88 87.65 0.60 22.69 16 5 O -0.59 -32.38 14.53 3.33 0.05 -32.33 16 6 N -0.60 -27.05 2.86 -851.15 -2.43 -29.48 16 7 C 0.06 1.84 9.80 127.77 1.25 3.09 16 8 C 0.26 14.75 5.18 85.63 0.44 15.20 16 9 C -0.54 -32.55 9.39 25.60 0.24 -32.31 16 10 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 11 C 0.01 0.51 5.46 84.65 0.46 0.98 16 12 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 13 Si 0.97 46.38 29.54 68.60 2.03 48.41 16 14 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 16 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 17 N -0.58 -18.09 2.41 -736.08 -1.78 -19.87 16 18 C 0.54 17.76 6.07 87.15 0.53 18.29 16 19 O -0.50 -20.51 15.67 3.51 0.06 -20.46 16 20 C -0.13 -2.79 2.42 -11.43 -0.03 -2.82 16 21 H 0.12 2.78 7.85 -2.39 -0.02 2.76 16 22 C -0.09 -1.47 5.86 30.45 0.18 -1.29 16 23 C -0.12 -1.19 5.80 30.82 0.18 -1.01 16 24 C -0.11 -0.86 5.81 30.75 0.18 -0.68 16 25 C -0.10 -1.20 5.84 30.29 0.18 -1.03 16 26 C -0.11 -1.95 2.36 -11.58 -0.03 -1.98 16 27 H 0.15 1.72 7.81 -2.39 -0.02 1.70 16 28 C 0.54 14.18 7.74 87.09 0.67 14.85 16 29 O -0.50 -15.19 17.52 -2.83 -0.05 -15.24 16 30 H 0.10 2.48 5.30 -2.38 -0.01 2.47 16 31 H 0.06 1.91 6.22 -2.39 -0.01 1.89 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.08 2.43 8.05 -2.39 -0.02 2.41 16 35 H 0.10 2.43 4.18 -2.39 -0.01 2.42 16 36 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 37 H -0.01 -0.33 7.36 -2.39 -0.02 -0.35 16 38 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.09 1.11 7.89 -2.39 -0.02 1.09 16 40 H 0.07 1.26 8.14 -2.38 -0.02 1.25 16 41 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 0.96 7.94 -2.39 -0.02 0.94 16 46 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -85.61 366.19 4.75 -80.86 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.99 Total: 11.23 kcal Atomic # 6 Polarization: 28.47 SS G_CDS: 5.61 Total: 34.07 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -3.92 Total: -106.55 kcal Atomic # 8 Polarization: -68.08 SS G_CDS: 0.05 Total: -68.03 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -85.61 4.75 -80.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298752047.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.587 kcal (2) G-P(sol) polarization free energy of solvation -85.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds