Wall clock time and date at job start Fri Apr 10 2020 14:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47362 * 2 1 4 4 C 1.50703 * 109.47500 * 239.99238 * 2 1 3 5 5 O 1.21281 * 120.00432 * 245.56517 * 4 2 1 6 6 N 1.34783 * 119.99503 * 65.56449 * 4 2 1 7 7 C 1.46502 * 120.00101 * 4.85029 * 6 4 2 8 8 C 1.46502 * 119.99867 * 184.85186 * 6 4 2 9 9 C 1.50698 * 109.47097 * 89.99863 * 8 6 4 10 10 H 1.08000 * 119.99891 * 359.97438 * 9 8 6 11 11 C 1.37878 * 119.99799 * 180.02562 * 9 8 6 12 12 N 1.31511 * 120.00187 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00064 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47065 * 59.99701 * 13 11 9 15 15 H 1.48499 * 109.47681 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47401 * 300.00119 * 13 11 9 17 17 N 1.46501 * 109.47048 * 119.99902 * 2 1 3 18 18 C 1.36045 * 123.28734 * 59.95731 * 17 2 1 19 19 O 1.21222 * 126.99626 * 12.74456 * 18 17 2 20 20 C 1.49603 * 106.00893 * 192.74927 * 18 17 2 21 21 H 1.08993 * 109.95798 * 84.79825 * 20 18 17 22 22 C 1.51311 * 120.00898 * 213.77134 * 20 18 17 23 23 C 1.52077 * 107.26011 * 177.90734 * 22 20 18 24 24 C 1.52473 * 112.05711 * 303.14766 * 23 22 20 25 25 C 1.53995 * 112.11387 * 52.61464 * 24 23 22 26 26 C 1.51035 * 106.70835 * 303.65120 * 25 24 23 27 27 H 1.09002 * 109.84120 * 306.57476 * 26 25 24 28 28 C 1.36064 * 123.28408 * 240.00030 * 17 2 1 29 29 O 1.21232 * 127.00816 * 12.58661 * 28 17 2 30 30 H 1.09000 * 109.47341 * 310.12743 * 1 2 3 31 31 H 1.09003 * 109.46689 * 70.13071 * 1 2 3 32 32 H 1.08995 * 109.47053 * 190.12439 * 1 2 3 33 33 H 1.08998 * 109.46686 * 95.76942 * 7 6 4 34 34 H 1.08998 * 109.47006 * 215.76640 * 7 6 4 35 35 H 1.08999 * 109.47113 * 335.77040 * 7 6 4 36 36 H 1.08999 * 109.46901 * 210.00330 * 8 6 4 37 37 H 1.08999 * 109.46991 * 329.99843 * 8 6 4 38 38 H 0.97000 * 120.00570 * 179.97438 * 12 11 9 39 39 H 1.09007 * 110.10557 * 297.82794 * 22 20 18 40 40 H 1.09000 * 110.10860 * 59.49293 * 22 20 18 41 41 H 1.08997 * 109.25270 * 182.24449 * 23 22 20 42 42 H 1.08998 * 108.50138 * 63.53926 * 23 22 20 43 43 H 1.08997 * 108.95426 * 291.93716 * 24 23 22 44 44 H 1.08998 * 108.88413 * 173.24481 * 24 23 22 45 45 H 1.08998 * 110.00334 * 184.35317 * 25 24 23 46 46 H 1.08997 * 110.00381 * 62.95072 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 8 2.6442 -1.7521 -1.1219 6 7 1.8018 -0.1885 -2.4514 7 6 1.1570 1.1209 -2.5784 8 6 2.1959 -0.9304 -3.6516 9 6 1.0577 -1.8146 -4.0919 10 1 0.1335 -1.8233 -3.5333 11 6 1.1968 -2.6131 -5.2072 12 7 2.3229 -2.6036 -5.8865 13 14 -0.2137 -3.7096 -5.7526 14 1 -1.4023 -2.8728 -6.0564 15 1 0.1857 -4.4616 -6.9693 16 1 -0.5462 -4.6658 -4.6661 17 7 2.0183 -0.6906 1.1962 18 6 1.7304 -1.9900 1.4780 19 8 1.2425 -2.8082 0.7283 20 6 2.1382 -2.2037 2.9014 21 1 1.3341 -1.8946 3.5692 22 6 2.6857 -3.5448 3.3386 23 6 3.0517 -3.4248 4.8098 24 6 4.0450 -2.2960 5.0626 25 6 3.5664 -0.9586 4.4678 26 6 3.3254 -1.1994 2.9963 27 1 4.2156 -1.6342 2.5419 28 6 2.8034 -0.0947 2.1342 29 8 3.0333 1.0902 2.2476 30 1 -0.3634 0.6623 0.7858 31 1 -0.3633 0.3493 -0.9665 32 1 -0.3633 -1.0116 0.1806 33 1 1.9193 1.8916 -2.6920 34 1 0.5060 1.1220 -3.4526 35 1 0.5662 1.3231 -1.6850 36 1 2.4401 -0.2284 -4.4488 37 1 3.0681 -1.5449 -3.4288 38 1 2.4209 -3.1657 -6.6710 39 1 1.9323 -4.3203 3.2002 40 1 3.5831 -3.7868 2.7693 41 1 3.4880 -4.3641 5.1494 42 1 2.1419 -3.2306 5.3779 43 1 5.0028 -2.5603 4.6144 44 1 4.1784 -2.1776 6.1379 45 1 4.3338 -0.1959 4.6000 46 1 2.6409 -0.6456 4.9509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298752057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:05 Heat of formation + Delta-G solvation = -89.307721 kcal Electronic energy + Delta-G solvation = -28954.310977 eV Core-core repulsion = 25037.636621 eV Total energy + Delta-G solvation = -3916.674356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.26659 -39.28124 -38.41353 -37.74854 -35.61765 -34.87755 -33.31001 -32.35780 -31.32018 -29.91143 -27.66365 -26.14144 -25.32838 -24.70806 -23.49500 -22.13025 -21.89222 -20.52816 -19.55295 -18.42117 -17.44480 -16.74123 -16.48652 -16.43143 -15.79228 -15.49670 -15.05801 -14.82273 -14.67345 -14.59124 -14.20775 -14.01960 -13.78926 -13.53213 -13.45479 -13.05206 -12.90574 -12.66265 -12.47150 -12.04023 -11.98529 -11.67042 -11.61132 -11.55005 -11.42400 -11.41051 -11.14878 -10.98551 -10.86650 -10.72978 -10.54953 -10.15134 -10.10911 -9.87580 -9.65790 -9.60332 -8.75981 -8.41179 -7.65930 -6.02342 -4.06970 1.64011 2.41763 2.68330 3.28183 3.34097 3.38133 3.43368 3.63352 3.91606 4.13134 4.20796 4.46405 4.56639 4.72607 4.77651 4.84136 4.88790 4.96693 5.00956 5.03397 5.08560 5.12774 5.31058 5.34952 5.43386 5.49261 5.50638 5.64677 5.68228 5.71963 5.77094 5.81076 5.88779 5.92071 5.93324 6.05042 6.09332 6.25647 6.84270 7.02467 7.37910 7.44342 7.51512 7.91524 7.95039 8.24395 8.35369 8.88735 9.03918 9.57814 11.05823 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.003734 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.903864 B = 7496.139786 C = 8289.720720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 H 0.118 0.882 4 C 0.499 3.501 5 O -0.519 6.519 6 N -0.598 5.598 7 C 0.067 3.933 8 C 0.248 3.752 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.575 5.575 18 C 0.539 3.461 19 O -0.430 6.430 20 C -0.128 4.128 21 H 0.118 0.882 22 C -0.098 4.098 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.095 4.095 26 C -0.133 4.133 27 H 0.123 0.877 28 C 0.547 3.453 29 O -0.481 6.481 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.044 0.956 38 H 0.264 0.736 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 5.172 22.403 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.003 3.997 3 H 0.136 0.864 4 C 0.283 3.717 5 O -0.394 6.394 6 N -0.331 5.331 7 C -0.077 4.077 8 C 0.129 3.871 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.321 5.321 18 C 0.326 3.674 19 O -0.296 6.296 20 C -0.149 4.149 21 H 0.136 0.864 22 C -0.136 4.136 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.133 4.133 26 C -0.154 4.154 27 H 0.141 0.859 28 C 0.337 3.663 29 O -0.352 6.352 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.099 4.702 21.868 22.368 hybrid contribution -0.800 -0.441 -0.683 1.141 sum -0.701 4.261 21.185 21.621 Atomic orbital electron populations 1.22270 0.91952 1.04044 1.04150 1.21271 0.96633 0.97642 0.84197 0.86401 1.20158 0.81324 0.85912 0.84347 1.90701 1.40339 1.22655 1.85749 1.48053 1.58886 1.19178 1.06976 1.21980 0.97718 0.85013 1.02972 1.19291 0.96811 0.91280 0.79730 1.21382 1.00122 1.24133 1.10835 0.92475 1.24923 0.96036 0.96744 0.96337 1.69922 1.24859 1.40033 1.18627 0.86556 0.82180 0.80737 0.77958 1.20241 1.21171 1.20107 1.47731 1.48724 1.13815 1.21850 1.20419 0.77466 0.80440 0.89054 1.90834 1.37978 1.45701 1.55044 1.22110 0.98578 0.99281 0.94930 0.86421 1.20896 1.01768 0.94598 0.96346 1.21270 0.99652 0.98948 0.95784 1.21604 0.99298 0.93774 1.01069 1.21176 1.02732 0.98177 0.91182 1.22096 1.00089 0.94805 0.98394 0.85898 1.20548 0.76421 0.88785 0.80552 1.90726 1.57847 1.15836 1.70809 0.91356 0.88915 0.90882 0.93393 0.90593 0.91392 0.94893 0.93816 0.92676 0.90052 0.90678 0.91096 0.91849 0.91582 0.91260 0.90228 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 8.80 37.16 0.33 -2.02 16 2 C 0.11 1.78 2.35 -69.08 -0.16 1.62 16 3 H 0.12 1.73 7.22 -51.93 -0.38 1.35 16 4 C 0.50 10.86 6.76 -10.98 -0.07 10.78 16 5 O -0.52 -13.52 13.78 -15.54 -0.21 -13.73 16 6 N -0.60 -13.04 2.86 -182.95 -0.52 -13.57 16 7 C 0.07 1.07 9.73 59.85 0.58 1.65 16 8 C 0.25 6.65 5.22 -5.19 -0.03 6.62 16 9 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 10 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 11 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 12 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 13 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 17 N -0.58 -8.92 2.41 -109.66 -0.26 -9.19 16 18 C 0.54 8.56 6.34 -10.94 -0.07 8.49 16 19 O -0.43 -8.83 15.30 -15.49 -0.24 -9.07 16 20 C -0.13 -1.35 2.41 -91.66 -0.22 -1.57 16 21 H 0.12 0.99 7.86 -51.93 -0.41 0.58 16 22 C -0.10 -0.89 5.74 -28.05 -0.16 -1.05 16 23 C -0.12 -0.75 5.75 -27.47 -0.16 -0.91 16 24 C -0.12 -0.72 5.81 -26.48 -0.15 -0.87 16 25 C -0.09 -0.69 5.85 -27.20 -0.16 -0.85 16 26 C -0.13 -1.36 2.37 -91.83 -0.22 -1.58 16 27 H 0.12 1.28 7.81 -51.93 -0.41 0.87 16 28 C 0.55 7.49 7.76 -10.96 -0.09 7.40 16 29 O -0.48 -7.44 17.52 5.60 0.10 -7.34 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.27 5.41 -51.93 -0.28 0.99 16 32 H 0.07 1.17 6.91 -51.93 -0.36 0.81 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.23 8.11 -51.93 -0.42 0.81 16 35 H 0.07 0.88 4.12 -51.93 -0.21 0.67 16 36 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 37 H 0.04 1.33 7.36 -51.93 -0.38 0.95 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.07 0.74 7.90 -51.93 -0.41 0.33 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.48 7.94 -51.93 -0.41 0.07 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -36.79 365.70 -7.93 -44.71 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -7.01 Total: -2.17 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: -1.00 Total: 13.86 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.05 Total: -49.12 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.35 Total: -30.15 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.79 -7.93 -44.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298752057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.593 kcal (2) G-P(sol) polarization free energy of solvation -36.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds