Wall clock time and date at job start Fri Apr 10 2020 14:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47362 * 2 1 4 4 C 1.50703 * 109.47500 * 239.99238 * 2 1 3 5 5 O 1.21281 * 120.00432 * 245.56517 * 4 2 1 6 6 N 1.34783 * 119.99503 * 65.56449 * 4 2 1 7 7 C 1.46502 * 120.00101 * 4.85029 * 6 4 2 8 8 C 1.46502 * 119.99867 * 184.85186 * 6 4 2 9 9 C 1.50698 * 109.47097 * 89.99863 * 8 6 4 10 10 H 1.08000 * 119.99891 * 359.97438 * 9 8 6 11 11 C 1.37878 * 119.99799 * 180.02562 * 9 8 6 12 12 N 1.31511 * 120.00187 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00064 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47065 * 59.99701 * 13 11 9 15 15 H 1.48499 * 109.47681 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47401 * 300.00119 * 13 11 9 17 17 N 1.46501 * 109.47048 * 119.99902 * 2 1 3 18 18 C 1.36045 * 123.28734 * 59.95731 * 17 2 1 19 19 O 1.21222 * 126.99626 * 12.74456 * 18 17 2 20 20 C 1.49603 * 106.00893 * 192.74927 * 18 17 2 21 21 H 1.08993 * 109.95798 * 84.79825 * 20 18 17 22 22 C 1.51311 * 120.00898 * 213.77134 * 20 18 17 23 23 C 1.52077 * 107.26011 * 177.90734 * 22 20 18 24 24 C 1.52473 * 112.05711 * 303.14766 * 23 22 20 25 25 C 1.53995 * 112.11387 * 52.61464 * 24 23 22 26 26 C 1.51035 * 106.70835 * 303.65120 * 25 24 23 27 27 H 1.09002 * 109.84120 * 306.57476 * 26 25 24 28 28 C 1.36064 * 123.28408 * 240.00030 * 17 2 1 29 29 O 1.21232 * 127.00816 * 12.58661 * 28 17 2 30 30 H 1.09000 * 109.47341 * 310.12743 * 1 2 3 31 31 H 1.09003 * 109.46689 * 70.13071 * 1 2 3 32 32 H 1.08995 * 109.47053 * 190.12439 * 1 2 3 33 33 H 1.08998 * 109.46686 * 95.76942 * 7 6 4 34 34 H 1.08998 * 109.47006 * 215.76640 * 7 6 4 35 35 H 1.08999 * 109.47113 * 335.77040 * 7 6 4 36 36 H 1.08999 * 109.46901 * 210.00330 * 8 6 4 37 37 H 1.08999 * 109.46991 * 329.99843 * 8 6 4 38 38 H 0.97000 * 120.00570 * 179.97438 * 12 11 9 39 39 H 1.09007 * 110.10557 * 297.82794 * 22 20 18 40 40 H 1.09000 * 110.10860 * 59.49293 * 22 20 18 41 41 H 1.08997 * 109.25270 * 182.24449 * 23 22 20 42 42 H 1.08998 * 108.50138 * 63.53926 * 23 22 20 43 43 H 1.08997 * 108.95426 * 291.93716 * 24 23 22 44 44 H 1.08998 * 108.88413 * 173.24481 * 24 23 22 45 45 H 1.08998 * 110.00334 * 184.35317 * 25 24 23 46 46 H 1.08997 * 110.00381 * 62.95072 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 8 2.6442 -1.7521 -1.1219 6 7 1.8018 -0.1885 -2.4514 7 6 1.1570 1.1209 -2.5784 8 6 2.1959 -0.9304 -3.6516 9 6 1.0577 -1.8146 -4.0919 10 1 0.1335 -1.8233 -3.5333 11 6 1.1968 -2.6131 -5.2072 12 7 2.3229 -2.6036 -5.8865 13 14 -0.2137 -3.7096 -5.7526 14 1 -1.4023 -2.8728 -6.0564 15 1 0.1857 -4.4616 -6.9693 16 1 -0.5462 -4.6658 -4.6661 17 7 2.0183 -0.6906 1.1962 18 6 1.7304 -1.9900 1.4780 19 8 1.2425 -2.8082 0.7283 20 6 2.1382 -2.2037 2.9014 21 1 1.3341 -1.8946 3.5692 22 6 2.6857 -3.5448 3.3386 23 6 3.0517 -3.4248 4.8098 24 6 4.0450 -2.2960 5.0626 25 6 3.5664 -0.9586 4.4678 26 6 3.3254 -1.1994 2.9963 27 1 4.2156 -1.6342 2.5419 28 6 2.8034 -0.0947 2.1342 29 8 3.0333 1.0902 2.2476 30 1 -0.3634 0.6623 0.7858 31 1 -0.3633 0.3493 -0.9665 32 1 -0.3633 -1.0116 0.1806 33 1 1.9193 1.8916 -2.6920 34 1 0.5060 1.1220 -3.4526 35 1 0.5662 1.3231 -1.6850 36 1 2.4401 -0.2284 -4.4488 37 1 3.0681 -1.5449 -3.4288 38 1 2.4209 -3.1657 -6.6710 39 1 1.9323 -4.3203 3.2002 40 1 3.5831 -3.7868 2.7693 41 1 3.4880 -4.3641 5.1494 42 1 2.1419 -3.2306 5.3779 43 1 5.0028 -2.5603 4.6144 44 1 4.1784 -2.1776 6.1379 45 1 4.3338 -0.1959 4.6000 46 1 2.6409 -0.6456 4.9509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298752057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:04 Heat of formation + Delta-G solvation = -113.304544 kcal Electronic energy + Delta-G solvation = -28955.351557 eV Core-core repulsion = 25037.636621 eV Total energy + Delta-G solvation = -3917.714936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.36797 -40.82692 -39.63695 -38.73731 -36.93354 -36.68195 -34.99678 -33.96596 -32.00426 -30.97015 -29.57203 -27.66678 -26.38198 -26.00749 -25.07397 -23.30193 -22.96136 -21.19320 -20.82810 -19.84234 -18.73248 -18.58752 -18.09608 -17.80855 -17.11251 -16.63692 -16.58193 -16.26327 -15.96736 -15.90974 -15.54828 -15.02084 -14.80637 -14.71385 -14.49484 -14.34897 -14.25027 -13.84380 -13.66936 -13.44600 -13.41505 -13.24827 -13.03323 -12.94553 -12.67776 -12.46059 -12.43753 -12.24864 -12.23005 -12.06795 -11.78728 -11.68595 -11.37308 -11.34035 -10.86791 -10.77583 -10.68152 -10.40431 -9.50509 -8.26591 -6.41391 0.49124 1.22534 1.32392 1.37758 1.44603 1.54548 1.63474 2.26898 2.39238 2.74259 3.02983 3.25190 3.28627 3.46220 3.71884 3.76966 3.89055 4.04738 4.10584 4.12056 4.20274 4.24161 4.32183 4.44529 4.47232 4.55601 4.63257 4.66905 4.80507 4.83869 4.88387 4.92914 5.06152 5.10435 5.16045 5.16156 5.21988 5.33710 5.37757 5.48713 5.53384 5.67880 5.76407 6.00700 6.25401 6.57394 6.67938 6.75339 7.20466 7.35079 8.80669 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.003734 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.903864 B = 7496.139786 C = 8289.720720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 H 0.141 0.859 4 C 0.486 3.514 5 O -0.574 6.574 6 N -0.605 5.605 7 C 0.061 3.939 8 C 0.263 3.737 9 C -0.543 4.543 10 H 0.052 0.948 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.967 3.033 14 H -0.256 1.256 15 H -0.275 1.275 16 H -0.282 1.282 17 N -0.584 5.584 18 C 0.531 3.469 19 O -0.489 6.489 20 C -0.117 4.117 21 H 0.150 0.850 22 C -0.100 4.100 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.089 4.089 26 C -0.123 4.123 27 H 0.119 0.881 28 C 0.548 3.452 29 O -0.496 6.496 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.027 0.973 37 H -0.006 1.006 38 H 0.268 0.732 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 6.286 25.079 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.008 3.992 3 H 0.159 0.841 4 C 0.273 3.727 5 O -0.453 6.453 6 N -0.337 5.337 7 C -0.081 4.081 8 C 0.142 3.858 9 C -0.582 4.582 10 H 0.070 0.930 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.791 3.209 14 H -0.181 1.181 15 H -0.200 1.200 16 H -0.208 1.208 17 N -0.329 5.329 18 C 0.321 3.679 19 O -0.359 6.359 20 C -0.138 4.138 21 H 0.167 0.833 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.154 4.154 25 C -0.127 4.127 26 C -0.144 4.144 27 H 0.136 0.864 28 C 0.339 3.661 29 O -0.368 6.368 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.045 0.955 37 H 0.012 0.988 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.252 5.887 24.575 25.301 hybrid contribution -0.312 -0.742 -1.544 1.741 sum -1.564 5.145 23.031 23.651 Atomic orbital electron populations 1.22259 0.89847 1.03643 1.05850 1.21263 0.98110 0.97733 0.82073 0.84101 1.21195 0.80245 0.85539 0.85742 1.90664 1.42665 1.25257 1.86746 1.48064 1.59114 1.20781 1.05757 1.22300 0.98547 0.82485 1.04722 1.18736 0.94664 0.90864 0.81537 1.21638 1.00367 1.25040 1.11145 0.92988 1.25859 0.98821 0.98070 0.96337 1.70041 1.26805 1.40830 1.19068 0.85480 0.79336 0.78669 0.77409 1.18073 1.20009 1.20773 1.47994 1.49156 1.14084 1.21678 1.21397 0.75879 0.79852 0.90724 1.90797 1.40768 1.47181 1.57114 1.22211 0.99524 1.00515 0.91558 0.83289 1.20959 1.00874 0.93517 0.98405 1.21243 1.00611 0.99783 0.93302 1.21604 0.98880 0.92634 1.02271 1.21253 1.03755 0.99188 0.88531 1.22167 0.99389 0.92802 1.00052 0.86371 1.21079 0.75514 0.89154 0.80320 1.90715 1.58119 1.16711 1.71282 0.87329 0.88497 0.93233 0.91055 0.90853 0.87784 0.95512 0.98764 0.92324 0.90641 0.92235 0.90028 0.90210 0.91894 0.89035 0.89834 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 8.80 71.98 0.63 -3.59 16 2 C 0.11 3.69 2.35 44.24 0.10 3.80 16 3 H 0.14 3.86 7.22 -2.39 -0.02 3.84 16 4 C 0.49 21.92 6.76 87.66 0.59 22.51 16 5 O -0.57 -31.85 13.78 17.14 0.24 -31.62 16 6 N -0.61 -27.16 2.86 -851.12 -2.43 -29.59 16 7 C 0.06 1.89 9.73 127.77 1.24 3.13 16 8 C 0.26 14.88 5.22 85.63 0.45 15.33 16 9 C -0.54 -32.63 9.39 25.60 0.24 -32.39 16 10 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 11 C 0.01 0.49 5.46 84.66 0.46 0.95 16 12 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 13 Si 0.97 46.55 29.54 68.60 2.03 48.57 16 14 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 16 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 17 N -0.58 -17.91 2.41 -736.23 -1.77 -19.68 16 18 C 0.53 17.18 6.34 87.11 0.55 17.73 16 19 O -0.49 -21.19 15.30 17.32 0.27 -20.93 16 20 C -0.12 -2.33 2.41 -11.47 -0.03 -2.36 16 21 H 0.15 2.05 7.86 -2.39 -0.02 2.03 16 22 C -0.10 -1.70 5.74 29.74 0.17 -1.52 16 23 C -0.11 -1.07 5.75 30.12 0.17 -0.90 16 24 C -0.12 -0.99 5.81 30.76 0.18 -0.81 16 25 C -0.09 -1.01 5.85 30.29 0.18 -0.84 16 26 C -0.12 -2.33 2.37 -11.58 -0.03 -2.36 16 27 H 0.12 2.40 7.81 -2.39 -0.02 2.38 16 28 C 0.55 14.25 7.76 87.09 0.68 14.92 16 29 O -0.50 -14.41 17.52 -2.88 -0.05 -14.46 16 30 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.10 2.47 5.41 -2.39 -0.01 2.46 16 32 H 0.05 1.58 6.91 -2.39 -0.02 1.56 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 2.32 8.11 -2.39 -0.02 2.30 16 35 H 0.10 2.44 4.12 -2.39 -0.01 2.44 16 36 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 37 H -0.01 -0.38 7.36 -2.39 -0.02 -0.40 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.06 1.18 7.90 -2.39 -0.02 1.16 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.09 0.78 7.94 -2.39 -0.02 0.76 16 Total: -1.00 -86.20 365.70 5.14 -81.06 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.98 Total: 10.55 kcal Atomic # 6 Polarization: 28.02 SS G_CDS: 5.59 Total: 33.61 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.92 Total: -106.79 kcal Atomic # 8 Polarization: -67.46 SS G_CDS: 0.45 Total: -67.00 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -86.20 5.14 -81.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298752057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.240 kcal (2) G-P(sol) polarization free energy of solvation -86.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds