Wall clock time and date at job start Fri Apr 10 2020 14:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00088 * 2 1 4 4 H 1.09002 * 109.46761 * 30.00360 * 3 2 1 5 5 C 1.53000 * 109.46932 * 270.00077 * 3 2 1 6 6 C 1.50694 * 109.47042 * 150.00103 * 3 2 1 7 7 O 1.21282 * 120.00538 * 5.00439 * 6 3 2 8 8 N 1.34780 * 120.00077 * 184.99882 * 6 3 2 9 9 C 1.46500 * 120.00390 * 180.02562 * 8 6 3 10 10 C 1.54412 * 129.01250 * 180.02562 * 9 8 6 11 11 C 1.54419 * 78.89086 * 180.64334 * 10 9 8 12 12 C 1.50703 * 129.01419 * 180.64405 * 11 10 9 13 13 O 1.21281 * 119.99538 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.47584 * 134.49063 * 180.02562 * 14 12 11 16 16 C 1.53947 * 86.11565 * 204.63541 * 15 14 12 17 17 C 1.50699 * 113.73968 * 222.04272 * 16 15 14 18 18 H 1.07998 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00043 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00162 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46863 * 89.99320 * 21 19 17 23 23 H 1.48496 * 109.47186 * 209.99414 * 21 19 17 24 24 H 1.48506 * 109.46767 * 329.99535 * 21 19 17 25 25 C 1.47577 * 134.49641 * 359.97438 * 14 12 11 26 26 C 1.54891 * 84.49409 * 43.15382 * 11 10 9 27 27 C 1.54885 * 84.49103 * 318.13307 * 11 10 9 28 28 H 1.09005 * 109.47077 * 299.99808 * 1 2 3 29 29 H 1.08996 * 109.47523 * 59.99994 * 1 2 3 30 30 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46775 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47219 * 299.99961 * 5 3 2 33 33 H 1.09006 * 109.47162 * 60.00270 * 5 3 2 34 34 H 0.97004 * 119.99616 * 0.02562 * 8 6 3 35 35 H 1.08992 * 114.93459 * 68.15798 * 10 9 8 36 36 H 1.08998 * 114.98218 * 293.12337 * 10 9 8 37 37 H 1.09001 * 113.76908 * 90.33461 * 15 14 12 38 38 H 1.08997 * 113.76763 * 318.93723 * 15 14 12 39 39 H 1.08997 * 113.73914 * 90.73986 * 16 15 14 40 40 H 0.97000 * 120.00154 * 180.02562 * 20 19 17 41 41 H 1.08995 * 113.76947 * 41.05826 * 25 14 12 42 42 H 1.09001 * 113.87193 * 269.67722 * 25 14 12 43 43 H 1.09001 * 114.98080 * 69.39259 * 26 11 10 44 44 H 1.09003 * 114.97457 * 204.56822 * 26 11 10 45 45 H 1.09008 * 114.97367 * 155.43371 * 27 11 10 46 46 H 1.08998 * 114.98354 * 290.60293 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7898 0.2045 1.0913 8 7 4.0255 2.4040 0.9223 9 6 5.3171 2.3635 1.6124 10 6 6.2691 3.5278 1.9623 11 6 7.0561 2.3221 2.5204 12 6 8.3863 2.3030 3.2283 13 8 8.9840 3.3400 3.4239 14 7 8.9122 1.1335 3.6430 15 6 10.1515 0.7481 4.3457 16 6 9.9746 -0.6300 3.6827 17 6 10.2604 -1.7877 4.6042 18 1 10.5577 -1.6039 5.6261 19 6 10.1411 -3.0816 4.1430 20 7 10.3900 -4.0919 4.9473 21 14 9.6261 -3.3995 2.3758 22 1 10.8328 -3.4667 1.5130 23 1 8.8900 -4.6869 2.2987 24 1 8.7459 -2.2974 1.9109 25 6 8.4798 -0.2760 3.5778 26 6 6.6441 1.6310 1.1968 27 6 5.6728 1.8445 3.0277 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.6606 2.7673 -1.4425 32 1 2.8829 1.0775 -1.9563 33 1 1.2568 1.8015 -1.9563 34 1 3.6645 3.2513 0.6179 35 1 5.8921 4.2190 2.7160 36 1 6.7291 4.0198 1.1053 37 1 10.0534 0.7293 5.4311 38 1 11.0351 1.2887 4.0065 39 1 10.4736 -0.7201 2.7179 40 1 10.3064 -5.0022 4.6227 41 1 8.0283 -0.5533 2.6253 42 1 7.8909 -0.5970 4.4370 43 1 7.1222 2.0286 0.3016 44 1 6.6168 0.5420 1.2354 45 1 5.5849 0.7688 3.1805 46 1 5.2477 2.4406 3.8352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271752410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:38 Heat of formation + Delta-G solvation = 24.552746 kcal Electronic energy + Delta-G solvation = -27569.468934 eV Core-core repulsion = 23657.731938 eV Total energy + Delta-G solvation = -3911.736996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.18840 -39.94871 -39.10320 -37.73922 -36.93433 -34.20586 -32.60221 -31.73228 -29.72004 -27.22785 -26.39880 -25.85853 -25.77982 -25.22304 -24.97474 -23.43748 -21.14558 -19.98307 -19.07938 -17.98783 -17.82912 -17.29457 -17.13204 -16.61097 -15.98409 -15.75982 -15.23968 -14.95338 -14.79506 -14.43124 -14.22182 -14.09134 -13.95902 -13.59958 -13.34747 -13.14201 -12.90657 -12.78627 -12.31515 -12.19679 -11.92875 -11.83337 -11.64165 -11.58923 -11.44303 -11.25658 -10.79818 -10.73168 -10.55294 -10.46860 -10.31005 -10.08269 -9.93622 -9.76260 -9.37684 -9.25769 -9.11817 -8.63299 -8.04207 -6.17740 -4.20501 2.28040 2.31948 2.82315 3.25814 3.28357 3.35598 3.38350 3.52340 3.97577 4.16931 4.24753 4.28156 4.34943 4.35409 4.47071 4.55391 4.58420 4.84009 4.86340 4.94457 5.03205 5.08175 5.20838 5.29128 5.45261 5.50794 5.56218 5.60655 5.70924 5.80053 5.81074 5.88976 5.95233 5.99682 6.13791 6.22790 6.33521 6.40684 6.42950 6.57850 6.59653 7.15509 7.16805 7.57275 7.94448 8.27455 8.39997 8.61505 8.85627 9.43430 10.94262 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.003517 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.302055 B = 7958.939658 C = 9736.024575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.073 3.927 4 H 0.088 0.912 5 C -0.171 4.171 6 C 0.513 3.487 7 O -0.498 6.498 8 N -0.676 5.676 9 C 0.094 3.906 10 C -0.080 4.080 11 C -0.144 4.144 12 C 0.590 3.410 13 O -0.555 6.555 14 N -0.632 5.632 15 C 0.119 3.881 16 C -0.006 4.006 17 C -0.516 4.516 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.892 5.892 21 Si 0.872 3.128 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.258 1.258 25 C 0.088 3.912 26 C -0.102 4.102 27 C -0.097 4.097 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.406 0.594 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.266 0.734 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.999 14.508 -12.132 27.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C 0.011 3.989 4 H 0.105 0.895 5 C -0.229 4.229 6 C 0.298 3.702 7 O -0.369 6.369 8 N -0.328 5.328 9 C 0.006 3.994 10 C -0.119 4.119 11 C -0.148 4.148 12 C 0.378 3.622 13 O -0.435 6.435 14 N -0.364 5.364 15 C -0.002 4.002 16 C -0.026 4.026 17 C -0.553 4.553 18 H 0.098 0.902 19 C -0.126 4.126 20 N -0.529 5.529 21 Si 0.699 3.301 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.182 1.182 25 C -0.035 4.035 26 C -0.141 4.141 27 C -0.136 4.136 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.241 0.759 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.367 14.030 -11.810 26.672 hybrid contribution -0.866 0.297 -1.075 1.412 sum -20.233 14.327 -12.885 27.940 Atomic orbital electron populations 1.22903 0.80413 1.03496 0.99992 1.88088 1.19792 1.24803 1.94885 1.21881 0.93110 0.87195 0.96694 0.89472 1.22247 1.03620 1.02065 0.94968 1.20473 0.86121 0.83954 0.79650 1.90790 1.68447 1.29371 1.48318 1.44524 1.19025 1.09594 1.59623 1.23224 0.83175 0.98679 0.94347 1.23956 0.92966 0.94647 1.00284 1.23248 0.93569 0.99336 0.98605 1.17983 0.83246 0.82380 0.78577 1.90655 1.61892 1.31942 1.59002 1.50268 1.23982 1.06191 1.55972 1.23326 0.85192 0.94415 0.97281 1.20930 0.90953 0.93248 0.97454 1.20813 1.47447 0.88468 0.98603 0.90223 1.24995 0.94072 0.96068 0.97450 1.69889 1.48051 0.99065 1.35881 0.86951 0.79402 0.78407 0.85362 1.20171 1.21184 1.18238 1.24149 1.01912 0.76399 1.00997 1.24852 0.92944 1.01065 0.95270 1.24358 0.91519 1.02436 0.95280 0.93754 0.93793 0.88954 0.90881 0.90813 0.91056 0.75870 0.89902 0.89846 0.89906 0.91473 0.92433 0.92369 0.91754 0.89537 0.90365 0.89303 0.89123 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.28 16 2 O -0.36 -3.88 9.89 -55.09 -0.54 -4.43 16 3 C 0.07 0.60 3.13 -27.89 -0.09 0.51 16 4 H 0.09 0.45 7.79 -51.93 -0.40 0.05 16 5 C -0.17 -1.00 9.48 37.16 0.35 -0.64 16 6 C 0.51 6.00 7.18 -10.99 -0.08 5.92 16 7 O -0.50 -8.46 16.43 -14.30 -0.24 -8.70 16 8 N -0.68 -6.25 5.67 -62.68 -0.36 -6.60 16 9 C 0.09 1.12 3.92 -147.16 -0.58 0.54 16 10 C -0.08 -0.93 7.78 -26.71 -0.21 -1.14 16 11 C -0.14 -2.19 3.11 -172.27 -0.54 -2.73 16 12 C 0.59 11.31 8.17 -10.99 -0.09 11.22 16 13 O -0.56 -12.05 17.82 5.56 0.10 -11.95 16 14 N -0.63 -12.48 3.61 -178.41 -0.64 -13.12 16 15 C 0.12 2.40 8.39 -2.97 -0.02 2.37 16 16 C -0.01 -0.14 2.88 -90.83 -0.26 -0.40 16 17 C -0.52 -13.52 9.32 -34.44 -0.32 -13.84 16 18 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 19 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 21 Si 0.87 20.56 27.09 -169.99 -4.60 15.95 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.26 -5.73 5.47 56.52 0.31 -5.42 16 25 C 0.09 1.78 7.37 -2.96 -0.02 1.76 16 26 C -0.10 -1.45 7.94 -24.71 -0.20 -1.65 16 27 C -0.10 -1.35 7.76 -25.99 -0.20 -1.55 16 28 H 0.04 0.24 8.09 -51.93 -0.42 -0.18 16 29 H 0.04 0.20 7.87 -51.93 -0.41 -0.21 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.27 7.93 -51.93 -0.41 -0.14 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.31 7.87 -51.93 -0.41 -0.10 16 34 H 0.41 2.13 8.61 -40.82 -0.35 1.78 16 35 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 36 H 0.08 0.88 7.91 -51.93 -0.41 0.47 16 37 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.28 7.10 -51.93 -0.37 0.91 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.06 1.28 6.47 -51.93 -0.34 0.94 16 42 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 43 H 0.08 1.01 7.91 -51.93 -0.41 0.60 16 44 H 0.09 1.44 7.45 -51.93 -0.39 1.05 16 45 H 0.09 1.43 7.97 -51.92 -0.41 1.02 16 46 H 0.08 0.97 7.93 -51.93 -0.41 0.56 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -34.67 382.67 -8.31 -42.99 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.31 Total: 1.82 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.26 Total: 3.66 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.23 Total: -45.10 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.68 Total: -25.08 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.60 Total: 15.95 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.67 -8.31 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271752410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.539 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds