Wall clock time and date at job start Fri Apr 10 2020 14:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00088 * 2 1 4 4 H 1.09002 * 109.46761 * 30.00360 * 3 2 1 5 5 C 1.53000 * 109.46932 * 270.00077 * 3 2 1 6 6 C 1.50694 * 109.47042 * 150.00103 * 3 2 1 7 7 O 1.21282 * 120.00538 * 5.00439 * 6 3 2 8 8 N 1.34780 * 120.00077 * 184.99882 * 6 3 2 9 9 C 1.46500 * 120.00390 * 180.02562 * 8 6 3 10 10 C 1.54412 * 129.01250 * 180.02562 * 9 8 6 11 11 C 1.54419 * 78.89086 * 180.64334 * 10 9 8 12 12 C 1.50703 * 129.01419 * 180.64405 * 11 10 9 13 13 O 1.21281 * 119.99538 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.47584 * 134.49063 * 180.02562 * 14 12 11 16 16 C 1.53947 * 86.11565 * 204.63541 * 15 14 12 17 17 C 1.50699 * 113.73968 * 222.04272 * 16 15 14 18 18 H 1.07998 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00043 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00162 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46863 * 89.99320 * 21 19 17 23 23 H 1.48496 * 109.47186 * 209.99414 * 21 19 17 24 24 H 1.48506 * 109.46767 * 329.99535 * 21 19 17 25 25 C 1.47577 * 134.49641 * 359.97438 * 14 12 11 26 26 C 1.54891 * 84.49409 * 43.15382 * 11 10 9 27 27 C 1.54885 * 84.49103 * 318.13307 * 11 10 9 28 28 H 1.09005 * 109.47077 * 299.99808 * 1 2 3 29 29 H 1.08996 * 109.47523 * 59.99994 * 1 2 3 30 30 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46775 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47219 * 299.99961 * 5 3 2 33 33 H 1.09006 * 109.47162 * 60.00270 * 5 3 2 34 34 H 0.97004 * 119.99616 * 0.02562 * 8 6 3 35 35 H 1.08992 * 114.93459 * 68.15798 * 10 9 8 36 36 H 1.08998 * 114.98218 * 293.12337 * 10 9 8 37 37 H 1.09001 * 113.76908 * 90.33461 * 15 14 12 38 38 H 1.08997 * 113.76763 * 318.93723 * 15 14 12 39 39 H 1.08997 * 113.73914 * 90.73986 * 16 15 14 40 40 H 0.97000 * 120.00154 * 180.02562 * 20 19 17 41 41 H 1.08995 * 113.76947 * 41.05826 * 25 14 12 42 42 H 1.09001 * 113.87193 * 269.67722 * 25 14 12 43 43 H 1.09001 * 114.98080 * 69.39259 * 26 11 10 44 44 H 1.09003 * 114.97457 * 204.56822 * 26 11 10 45 45 H 1.09008 * 114.97367 * 155.43371 * 27 11 10 46 46 H 1.08998 * 114.98354 * 290.60293 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7898 0.2045 1.0913 8 7 4.0255 2.4040 0.9223 9 6 5.3171 2.3635 1.6124 10 6 6.2691 3.5278 1.9623 11 6 7.0561 2.3221 2.5204 12 6 8.3863 2.3030 3.2283 13 8 8.9840 3.3400 3.4239 14 7 8.9122 1.1335 3.6430 15 6 10.1515 0.7481 4.3457 16 6 9.9746 -0.6300 3.6827 17 6 10.2604 -1.7877 4.6042 18 1 10.5577 -1.6039 5.6261 19 6 10.1411 -3.0816 4.1430 20 7 10.3900 -4.0919 4.9473 21 14 9.6261 -3.3995 2.3758 22 1 10.8328 -3.4667 1.5130 23 1 8.8900 -4.6869 2.2987 24 1 8.7459 -2.2974 1.9109 25 6 8.4798 -0.2760 3.5778 26 6 6.6441 1.6310 1.1968 27 6 5.6728 1.8445 3.0277 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.6606 2.7673 -1.4425 32 1 2.8829 1.0775 -1.9563 33 1 1.2568 1.8015 -1.9563 34 1 3.6645 3.2513 0.6179 35 1 5.8921 4.2190 2.7160 36 1 6.7291 4.0198 1.1053 37 1 10.0534 0.7293 5.4311 38 1 11.0351 1.2887 4.0065 39 1 10.4736 -0.7201 2.7179 40 1 10.3064 -5.0022 4.6227 41 1 8.0283 -0.5533 2.6253 42 1 7.8909 -0.5970 4.4370 43 1 7.1222 2.0286 0.3016 44 1 6.6168 0.5420 1.2354 45 1 5.5849 0.7688 3.1805 46 1 5.2477 2.4406 3.8352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271752410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:37 Heat of formation + Delta-G solvation = -0.343719 kcal Electronic energy + Delta-G solvation = -27570.548525 eV Core-core repulsion = 23657.731938 eV Total energy + Delta-G solvation = -3912.816587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.26400 -40.95679 -40.54003 -38.63750 -38.41990 -35.12148 -34.67813 -32.31104 -31.46176 -27.98387 -27.70050 -27.04440 -26.94009 -26.72475 -25.99107 -24.60764 -22.18757 -21.35448 -20.36556 -19.39882 -19.12605 -18.62390 -18.18336 -17.66244 -17.25453 -16.71682 -16.60811 -16.00869 -15.93696 -15.64567 -15.45742 -15.28774 -15.21580 -14.91801 -14.70902 -14.32997 -13.78909 -13.65634 -13.56290 -13.40873 -13.31791 -12.97087 -12.77535 -12.71783 -12.61335 -12.47570 -12.28496 -12.12263 -11.91801 -11.66820 -11.62140 -11.49933 -11.31424 -11.07735 -10.88956 -10.68912 -10.52777 -10.19221 -9.69245 -8.30840 -6.37369 1.33703 1.36935 1.41007 1.43702 1.48336 1.49732 1.88849 2.34695 2.87943 3.01674 3.06266 3.18526 3.21408 3.27627 3.38242 3.41278 3.70109 3.90803 4.02365 4.04092 4.27094 4.41019 4.42252 4.44612 4.51241 4.55174 4.55905 4.56269 4.68517 4.71498 4.73127 4.73455 4.77723 4.81139 4.85259 4.87112 4.89333 4.96436 5.21115 5.33329 5.41454 5.57879 6.05358 6.25044 6.47502 6.66505 6.75286 7.05873 7.15760 7.29968 8.84667 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.003517 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.302055 B = 7958.939658 C = 9736.024575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.074 3.926 4 H 0.125 0.875 5 C -0.166 4.166 6 C 0.508 3.492 7 O -0.560 6.560 8 N -0.655 5.655 9 C 0.116 3.884 10 C -0.056 4.056 11 C -0.170 4.170 12 C 0.589 3.411 13 O -0.581 6.581 14 N -0.634 5.634 15 C 0.121 3.879 16 C -0.012 4.012 17 C -0.513 4.513 18 H 0.045 0.955 19 C 0.025 3.975 20 N -0.941 5.941 21 Si 0.931 3.069 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.238 1.238 25 C 0.102 3.898 26 C -0.107 4.107 27 C -0.101 4.101 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.430 0.570 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.268 0.732 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.453 17.475 -14.648 32.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.013 3.987 4 H 0.142 0.858 5 C -0.224 4.224 6 C 0.295 3.705 7 O -0.436 6.436 8 N -0.309 5.309 9 C 0.026 3.974 10 C -0.094 4.094 11 C -0.174 4.174 12 C 0.379 3.621 13 O -0.462 6.462 14 N -0.366 5.366 15 C -0.001 4.001 16 C -0.032 4.032 17 C -0.551 4.551 18 H 0.064 0.936 19 C -0.174 4.174 20 N -0.580 5.580 21 Si 0.755 3.245 22 H -0.193 1.193 23 H -0.216 1.216 24 H -0.161 1.161 25 C -0.021 4.021 26 C -0.147 4.147 27 C -0.140 4.140 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.270 0.730 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.852 17.075 -14.351 31.226 hybrid contribution -0.085 -0.601 -0.195 0.637 sum -21.938 16.475 -14.546 31.053 Atomic orbital electron populations 1.23085 0.78500 1.04052 1.01658 1.88035 1.22055 1.26715 1.95179 1.22079 0.91431 0.87147 0.98007 0.85793 1.22261 1.04431 1.02651 0.93034 1.21317 0.87157 0.83341 0.78675 1.90772 1.70123 1.31736 1.51014 1.44377 1.17634 1.10399 1.58448 1.22856 0.83670 0.98231 0.92617 1.23871 0.91151 0.93413 1.00994 1.23198 0.92096 1.02878 0.99209 1.18531 0.84233 0.81385 0.77904 1.90632 1.63055 1.32531 1.60003 1.50222 1.23766 1.06396 1.56208 1.23223 0.86203 0.93357 0.97271 1.20885 0.92508 0.92755 0.97011 1.20992 1.46324 0.89972 0.97843 0.93641 1.25774 0.94289 0.95829 1.01524 1.70022 1.50299 0.99606 1.38106 0.85997 0.79513 0.78533 0.80458 1.19324 1.21615 1.16150 1.23847 1.00195 0.76844 1.01174 1.24884 0.94869 0.99662 0.95236 1.24379 0.91101 1.01163 0.97405 0.92600 0.91480 0.89178 0.88207 0.93202 0.89098 0.72977 0.88046 0.87921 0.90034 0.90330 0.91806 0.92324 0.91047 0.90039 0.88838 0.92070 0.91827 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.47 16 2 O -0.40 -8.14 9.89 -129.99 -1.29 -9.43 16 3 C 0.07 1.01 3.13 29.85 0.09 1.10 16 4 H 0.12 0.74 7.79 -2.39 -0.02 0.72 16 5 C -0.17 -1.36 9.48 71.98 0.68 -0.68 16 6 C 0.51 10.92 7.18 87.65 0.63 11.55 16 7 O -0.56 -19.10 16.43 15.95 0.26 -18.84 16 8 N -0.66 -9.95 5.67 -470.60 -2.67 -12.63 16 9 C 0.12 2.44 3.92 -6.34 -0.02 2.42 16 10 C -0.06 -1.10 7.78 30.61 0.24 -0.86 16 11 C -0.17 -4.91 3.11 -63.68 -0.20 -5.11 16 12 C 0.59 21.97 8.17 87.66 0.72 22.69 16 13 O -0.58 -24.49 17.82 -3.03 -0.05 -24.55 16 14 N -0.63 -24.77 3.61 -836.76 -3.02 -27.79 16 15 C 0.12 4.88 8.39 86.48 0.73 5.60 16 16 C -0.01 -0.54 2.88 -10.87 -0.03 -0.57 16 17 C -0.51 -27.67 9.32 25.60 0.24 -27.43 16 18 H 0.05 2.70 8.06 -2.91 -0.02 2.68 16 19 C 0.02 1.38 5.47 84.65 0.46 1.84 16 20 N -0.94 -56.99 13.96 21.45 0.30 -56.69 16 21 Si 0.93 42.71 27.09 68.60 1.86 44.56 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.24 -10.04 5.47 99.48 0.54 -9.50 16 25 C 0.10 4.13 7.37 86.49 0.64 4.77 16 26 C -0.11 -2.88 7.94 31.90 0.25 -2.63 16 27 C -0.10 -2.71 7.76 31.07 0.24 -2.47 16 28 H 0.06 0.45 8.09 -2.38 -0.02 0.43 16 29 H 0.07 0.39 7.87 -2.39 -0.02 0.37 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 0.26 7.93 -2.39 -0.02 0.24 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.42 7.87 -2.38 -0.02 0.40 16 34 H 0.43 2.43 8.61 -92.71 -0.80 1.63 16 35 H 0.10 1.68 7.94 -2.39 -0.02 1.66 16 36 H 0.10 1.69 7.91 -2.39 -0.02 1.67 16 37 H 0.08 3.28 8.09 -2.39 -0.02 3.26 16 38 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.06 2.78 7.10 -2.39 -0.02 2.76 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.07 2.80 6.47 -2.39 -0.02 2.78 16 42 H 0.08 3.37 8.09 -2.39 -0.02 3.36 16 43 H 0.09 2.19 7.91 -2.39 -0.02 2.17 16 44 H 0.06 1.98 7.45 -2.39 -0.02 1.97 16 45 H 0.06 2.05 7.97 -2.38 -0.02 2.03 16 46 H 0.09 2.13 7.93 -2.39 -0.02 2.11 16 Total: -1.00 -79.18 382.67 1.31 -77.87 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.03 Total: 15.79 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 5.89 Total: 11.70 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -5.39 Total: -97.10 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.08 Total: -52.81 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.86 Total: 44.56 kcal Total: -79.18 1.31 -77.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271752410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.525 kcal (2) G-P(sol) polarization free energy of solvation -79.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds