Wall clock time and date at job start Fri Apr 10 2020 14:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00166 * 2 1 4 4 H 1.08999 * 109.46478 * 29.99829 * 3 2 1 5 5 C 1.53002 * 109.46996 * 269.99735 * 3 2 1 6 6 C 1.50700 * 109.46861 * 149.99685 * 3 2 1 7 7 O 1.21273 * 120.00231 * 16.19042 * 6 3 2 8 8 N 1.34782 * 119.99662 * 195.91070 * 6 3 2 9 9 C 1.48101 * 126.94355 * 354.65506 * 8 6 3 10 10 C 1.54587 * 103.43609 * 219.00918 * 9 8 6 11 11 C 1.54701 * 102.78441 * 322.70951 * 10 9 8 12 12 H 1.08999 * 118.16456 * 162.70810 * 11 10 9 13 13 C 1.53129 * 117.55069 * 318.96733 * 11 10 9 14 14 C 1.47379 * 126.94535 * 174.97212 * 8 6 3 15 15 C 1.50694 * 117.18060 * 14.55002 * 14 8 6 16 16 O 1.21284 * 119.99684 * 230.69602 * 15 14 8 17 17 N 1.34775 * 120.00031 * 50.69937 * 15 14 8 18 18 C 1.47062 * 136.05872 * 355.54501 * 17 15 14 19 19 C 1.53240 * 88.08387 * 207.20547 * 18 17 15 20 20 C 1.50705 * 114.50320 * 220.45701 * 19 18 17 21 21 H 1.07998 * 119.99784 * 93.84430 * 20 19 18 22 22 C 1.37873 * 119.99939 * 273.84551 * 20 19 18 23 23 N 1.31519 * 120.00161 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99996 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47416 * 59.99412 * 24 22 20 26 26 H 1.48498 * 109.46960 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46523 * 299.99638 * 24 22 20 28 28 C 1.47065 * 136.05384 * 175.91462 * 17 15 14 29 29 H 1.08994 * 109.47248 * 300.00336 * 1 2 3 30 30 H 1.09004 * 109.46787 * 60.00600 * 1 2 3 31 31 H 1.08999 * 109.46952 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47117 * 186.29409 * 5 3 2 33 33 H 1.09001 * 109.46672 * 306.29276 * 5 3 2 34 34 H 1.09001 * 109.47018 * 66.29265 * 5 3 2 35 35 H 1.09000 * 110.65882 * 337.49887 * 9 8 6 36 36 H 1.09002 * 110.65875 * 100.61167 * 9 8 6 37 37 H 1.09004 * 110.86287 * 204.31853 * 10 9 8 38 38 H 1.08996 * 110.75418 * 81.05061 * 10 9 8 39 39 H 1.09004 * 117.45386 * 344.36913 * 13 11 10 40 40 H 1.08996 * 117.43173 * 199.61521 * 13 11 10 41 41 H 1.09001 * 113.46460 * 321.93454 * 18 17 15 42 42 H 1.08996 * 113.46662 * 92.37463 * 18 17 15 43 43 H 1.09000 * 114.01761 * 87.71597 * 19 18 17 44 44 H 0.96995 * 119.99830 * 179.97438 * 23 22 20 45 45 H 1.09000 * 113.46874 * 267.62012 * 28 17 15 46 46 H 1.09000 * 113.47268 * 38.00935 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 3.3386 1.2638 0.7105 7 8 3.8861 0.2004 0.9109 8 7 3.9209 2.4090 1.1182 9 6 3.4520 3.7889 0.8548 10 6 4.7607 4.5694 0.5942 11 6 5.7472 3.9288 1.5990 12 1 6.8146 4.0845 1.4424 13 6 5.2221 3.6099 3.0017 14 6 5.1565 2.5411 1.9107 15 6 6.0313 1.3200 2.0306 16 8 6.4073 0.9483 3.1222 17 7 6.3958 0.6410 0.9250 18 6 6.0946 0.7179 -0.5124 19 6 6.3853 -0.7840 -0.6013 20 6 7.1523 -1.2006 -1.8299 21 1 8.2286 -1.2811 -1.7930 22 6 6.4799 -1.4787 -3.0009 23 7 5.1691 -1.3811 -3.0457 24 14 7.4305 -1.9957 -4.5237 25 1 8.1835 -3.2431 -4.2373 26 1 6.4826 -2.2346 -5.6415 27 1 8.3811 -0.9196 -4.9027 28 6 7.2648 -0.5072 0.6259 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 2.7617 2.7159 -1.4446 33 1 2.7905 1.0211 -1.9877 34 1 1.2490 1.9088 -1.9228 35 1 2.8080 3.8150 -0.0241 36 1 2.9335 4.1915 1.7250 37 1 4.6285 5.6305 0.8055 38 1 5.1016 4.4205 -0.4303 39 1 4.2849 4.0763 3.3055 40 1 5.9578 3.4744 3.7944 41 1 5.0559 0.9708 -0.7252 42 1 6.8014 1.3308 -1.0718 43 1 5.5208 -1.4160 -0.3982 44 1 4.6961 -1.5765 -3.8697 45 1 8.2865 -0.2240 0.3728 46 1 7.2200 -1.2935 1.3794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271752469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:22 Heat of formation + Delta-G solvation = -13.316387 kcal Electronic energy + Delta-G solvation = -29823.892371 eV Core-core repulsion = 25910.513247 eV Total energy + Delta-G solvation = -3913.379125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.04885 -38.92430 -38.59457 -37.10376 -36.57543 -33.26892 -32.53589 -30.99891 -30.48383 -28.92684 -26.75919 -25.45700 -24.81178 -24.70143 -24.01318 -22.35484 -21.01096 -20.08871 -19.41218 -17.80055 -17.19037 -16.61072 -16.54514 -16.21108 -15.86600 -15.24252 -15.08930 -14.73173 -14.63405 -14.34808 -14.01244 -13.85876 -13.48377 -13.10336 -12.87442 -12.73145 -12.68574 -12.31940 -12.17751 -12.00563 -11.90162 -11.72041 -11.26290 -11.20492 -11.11314 -11.02027 -10.80993 -10.80866 -10.63319 -10.42194 -10.14914 -9.84918 -9.44109 -9.21380 -9.00028 -8.82987 -8.43482 -8.38129 -7.59050 -6.01969 -4.08304 2.44758 2.82300 3.22861 3.31485 3.36315 3.39069 3.55977 3.86640 3.97697 4.32881 4.42927 4.46600 4.69486 4.83618 4.83655 4.86330 4.96174 5.10724 5.19075 5.26463 5.29751 5.36020 5.39025 5.54009 5.59159 5.65123 5.72883 5.73765 5.75912 5.92517 6.02461 6.20561 6.28936 6.37753 6.40195 6.45002 6.64065 6.74258 6.89020 7.07482 7.13933 7.60643 7.77718 8.01215 8.38299 8.45337 8.70722 8.94015 8.95957 9.56608 11.06312 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.005822 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.380864 B = 4808.445229 C = 6160.334062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.351 6.351 3 C 0.085 3.915 4 H 0.075 0.925 5 C -0.175 4.175 6 C 0.522 3.478 7 O -0.463 6.463 8 N -0.590 5.590 9 C 0.090 3.910 10 C -0.103 4.103 11 C -0.159 4.159 12 H 0.124 0.876 13 C -0.128 4.128 14 C 0.073 3.927 15 C 0.581 3.419 16 O -0.565 6.565 17 N -0.611 5.611 18 C 0.108 3.892 19 C 0.044 3.956 20 C -0.518 4.518 21 H 0.060 0.940 22 C 0.070 3.930 23 N -0.877 5.877 24 Si 0.891 3.109 25 H -0.276 1.276 26 H -0.288 1.288 27 H -0.277 1.277 28 C 0.099 3.901 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.261 0.739 45 H 0.070 0.930 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 14.986 4.223 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.023 3.977 4 H 0.092 0.908 5 C -0.233 4.233 6 C 0.309 3.691 7 O -0.331 6.331 8 N -0.329 5.329 9 C -0.033 4.033 10 C -0.141 4.141 11 C -0.179 4.179 12 H 0.142 0.858 13 C -0.167 4.167 14 C -0.017 4.017 15 C 0.369 3.631 16 O -0.445 6.445 17 N -0.342 5.342 18 C -0.015 4.015 19 C 0.025 3.975 20 C -0.557 4.557 21 H 0.078 0.922 22 C -0.134 4.134 23 N -0.514 5.514 24 Si 0.719 3.281 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.023 4.023 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.135 0.865 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.802 13.918 4.877 17.174 hybrid contribution 0.103 0.190 -0.940 0.965 sum -8.699 14.108 3.937 17.035 Atomic orbital electron populations 1.22848 0.81093 1.03177 0.99509 1.88166 1.19119 1.24716 1.94820 1.21760 0.92463 0.86656 0.96790 0.90757 1.22315 1.03153 1.02820 0.94981 1.20131 0.86607 0.82781 0.79588 1.90919 1.62041 1.28175 1.52006 1.48161 1.25386 1.05790 1.53533 1.22646 0.97451 0.81578 1.01615 1.22230 0.93302 0.99291 0.99258 1.23776 1.00471 0.96945 0.96699 0.85815 1.23326 1.03375 0.97999 0.91966 1.21411 0.88082 0.91208 1.00954 1.18183 0.80049 0.81763 0.83133 1.90625 1.59036 1.68457 1.26426 1.49529 1.45301 1.31698 1.07632 1.23467 0.99408 1.02285 0.76343 1.20225 0.95205 0.91271 0.90819 1.20903 0.93148 1.47069 0.94556 0.92210 1.25008 0.94803 0.94765 0.98797 1.70003 1.06470 1.47740 1.27184 0.86689 0.79712 0.79265 0.82483 1.20138 1.21318 1.20278 1.23357 0.94833 0.86005 0.98067 0.94333 0.93948 0.89174 0.91307 0.88986 0.91600 0.89161 0.90726 0.89431 0.89576 0.88056 0.86487 0.92242 0.92141 0.90744 0.92897 0.91226 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 101.05 1.09 1.45 16 2 O -0.35 -6.09 9.93 -54.60 -0.54 -6.63 16 3 C 0.08 1.27 2.41 -27.88 -0.07 1.20 16 4 H 0.07 0.83 7.62 -51.93 -0.40 0.44 16 5 C -0.18 -2.37 9.29 37.16 0.35 -2.02 16 6 C 0.52 9.72 5.20 -10.98 -0.06 9.66 16 7 O -0.46 -11.16 12.16 -13.81 -0.17 -11.33 16 8 N -0.59 -9.14 3.13 -156.73 -0.49 -9.63 16 9 C 0.09 0.89 6.14 -2.33 -0.01 0.87 16 10 C -0.10 -0.96 7.00 -25.00 -0.17 -1.13 16 11 C -0.16 -1.97 7.09 -89.13 -0.63 -2.60 16 12 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 13 C -0.13 -1.63 9.42 -26.73 -0.25 -1.88 16 14 C 0.07 1.23 3.10 -132.04 -0.41 0.82 16 15 C 0.58 12.93 6.40 -10.99 -0.07 12.86 16 16 O -0.57 -14.08 17.51 5.55 0.10 -13.99 16 17 N -0.61 -14.15 2.74 -185.40 -0.51 -14.66 16 18 C 0.11 2.52 6.79 -8.64 -0.06 2.46 16 19 C 0.04 1.15 3.53 -91.39 -0.32 0.83 16 20 C -0.52 -14.07 8.84 -34.44 -0.30 -14.37 16 21 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 22 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 23 N -0.88 -24.85 13.26 55.43 0.74 -24.11 16 24 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 C 0.10 2.36 8.19 -8.51 -0.07 2.29 16 29 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.04 0.41 8.03 -51.93 -0.42 0.00 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.79 6.05 -51.93 -0.31 0.47 16 33 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 34 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 35 H 0.09 0.73 5.50 -51.93 -0.29 0.45 16 36 H 0.07 0.59 7.30 -51.93 -0.38 0.21 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 1.03 7.16 -51.93 -0.37 0.66 16 40 H 0.12 1.55 8.04 -51.93 -0.42 1.13 16 41 H 0.06 1.42 5.20 -51.93 -0.27 1.15 16 42 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 43 H 0.07 2.23 7.86 -51.93 -0.41 1.83 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16 46 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 369.28 15.07 5.57 5.57 Total: -1.00 -35.67 369.28 -8.44 -44.11 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.02 Total: 2.66 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -1.09 Total: 12.25 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.26 Total: -48.40 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.61 Total: -31.94 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.67 -8.44 -44.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271752469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.798 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds