Wall clock time and date at job start Fri Apr 10 2020 14:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00166 * 2 1 4 4 H 1.08999 * 109.46478 * 29.99829 * 3 2 1 5 5 C 1.53002 * 109.46996 * 269.99735 * 3 2 1 6 6 C 1.50700 * 109.46861 * 149.99685 * 3 2 1 7 7 O 1.21273 * 120.00231 * 16.19042 * 6 3 2 8 8 N 1.34782 * 119.99662 * 195.91070 * 6 3 2 9 9 C 1.48101 * 126.94355 * 354.65506 * 8 6 3 10 10 C 1.54587 * 103.43609 * 219.00918 * 9 8 6 11 11 C 1.54701 * 102.78441 * 322.70951 * 10 9 8 12 12 H 1.08999 * 118.16456 * 162.70810 * 11 10 9 13 13 C 1.53129 * 117.55069 * 318.96733 * 11 10 9 14 14 C 1.47379 * 126.94535 * 174.97212 * 8 6 3 15 15 C 1.50694 * 117.18060 * 14.55002 * 14 8 6 16 16 O 1.21284 * 119.99684 * 230.69602 * 15 14 8 17 17 N 1.34775 * 120.00031 * 50.69937 * 15 14 8 18 18 C 1.47062 * 136.05872 * 355.54501 * 17 15 14 19 19 C 1.53240 * 88.08387 * 207.20547 * 18 17 15 20 20 C 1.50705 * 114.50320 * 220.45701 * 19 18 17 21 21 H 1.07998 * 119.99784 * 93.84430 * 20 19 18 22 22 C 1.37873 * 119.99939 * 273.84551 * 20 19 18 23 23 N 1.31519 * 120.00161 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99996 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47416 * 59.99412 * 24 22 20 26 26 H 1.48498 * 109.46960 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46523 * 299.99638 * 24 22 20 28 28 C 1.47065 * 136.05384 * 175.91462 * 17 15 14 29 29 H 1.08994 * 109.47248 * 300.00336 * 1 2 3 30 30 H 1.09004 * 109.46787 * 60.00600 * 1 2 3 31 31 H 1.08999 * 109.46952 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47117 * 186.29409 * 5 3 2 33 33 H 1.09001 * 109.46672 * 306.29276 * 5 3 2 34 34 H 1.09001 * 109.47018 * 66.29265 * 5 3 2 35 35 H 1.09000 * 110.65882 * 337.49887 * 9 8 6 36 36 H 1.09002 * 110.65875 * 100.61167 * 9 8 6 37 37 H 1.09004 * 110.86287 * 204.31853 * 10 9 8 38 38 H 1.08996 * 110.75418 * 81.05061 * 10 9 8 39 39 H 1.09004 * 117.45386 * 344.36913 * 13 11 10 40 40 H 1.08996 * 117.43173 * 199.61521 * 13 11 10 41 41 H 1.09001 * 113.46460 * 321.93454 * 18 17 15 42 42 H 1.08996 * 113.46662 * 92.37463 * 18 17 15 43 43 H 1.09000 * 114.01761 * 87.71597 * 19 18 17 44 44 H 0.96995 * 119.99830 * 179.97438 * 23 22 20 45 45 H 1.09000 * 113.46874 * 267.62012 * 28 17 15 46 46 H 1.09000 * 113.47268 * 38.00935 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 3.3386 1.2638 0.7105 7 8 3.8861 0.2004 0.9109 8 7 3.9209 2.4090 1.1182 9 6 3.4520 3.7889 0.8548 10 6 4.7607 4.5694 0.5942 11 6 5.7472 3.9288 1.5990 12 1 6.8146 4.0845 1.4424 13 6 5.2221 3.6099 3.0017 14 6 5.1565 2.5411 1.9107 15 6 6.0313 1.3200 2.0306 16 8 6.4073 0.9483 3.1222 17 7 6.3958 0.6410 0.9250 18 6 6.0946 0.7179 -0.5124 19 6 6.3853 -0.7840 -0.6013 20 6 7.1523 -1.2006 -1.8299 21 1 8.2286 -1.2811 -1.7930 22 6 6.4799 -1.4787 -3.0009 23 7 5.1691 -1.3811 -3.0457 24 14 7.4305 -1.9957 -4.5237 25 1 8.1835 -3.2431 -4.2373 26 1 6.4826 -2.2346 -5.6415 27 1 8.3811 -0.9196 -4.9027 28 6 7.2648 -0.5072 0.6259 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 2.7617 2.7159 -1.4446 33 1 2.7905 1.0211 -1.9877 34 1 1.2490 1.9088 -1.9228 35 1 2.8080 3.8150 -0.0241 36 1 2.9335 4.1915 1.7250 37 1 4.6285 5.6305 0.8055 38 1 5.1016 4.4205 -0.4303 39 1 4.2849 4.0763 3.3055 40 1 5.9578 3.4744 3.7944 41 1 5.0559 0.9708 -0.7252 42 1 6.8014 1.3308 -1.0718 43 1 5.5208 -1.4160 -0.3982 44 1 4.6961 -1.5765 -3.8697 45 1 8.2865 -0.2240 0.3728 46 1 7.2200 -1.2935 1.3794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271752469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:21 Heat of formation + Delta-G solvation = -38.433365 kcal Electronic energy + Delta-G solvation = -29824.981525 eV Core-core repulsion = 25910.513247 eV Total energy + Delta-G solvation = -3914.468278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.30290 -40.49944 -39.99323 -38.57239 -38.16919 -34.63150 -34.45460 -32.08041 -31.64180 -30.63817 -27.72805 -27.34710 -26.74921 -25.80945 -25.11322 -23.77391 -22.33594 -21.37651 -20.87599 -19.21492 -18.89730 -18.47740 -17.69145 -17.53813 -17.30448 -16.67644 -16.47719 -16.20874 -16.09513 -15.91685 -15.23012 -15.17508 -14.84046 -14.46551 -14.16941 -14.00768 -13.85024 -13.65955 -13.65310 -13.34485 -13.21686 -13.13948 -12.88695 -12.78749 -12.66103 -12.55533 -12.18507 -12.11858 -12.02892 -11.68370 -11.65935 -11.25320 -11.04236 -10.98706 -10.68812 -10.49984 -10.48538 -9.57649 -9.42170 -8.11233 -6.26556 1.16713 1.45077 1.47790 1.55194 1.55376 1.81576 1.95871 2.45233 2.67868 2.94522 3.15181 3.29828 3.38583 3.52351 3.69623 3.83957 3.88116 4.01643 4.07320 4.24342 4.38619 4.39079 4.42236 4.46916 4.50505 4.53405 4.61334 4.65756 4.70274 4.72571 4.78649 4.81460 4.82569 4.96667 5.01896 5.06003 5.12050 5.19097 5.25511 5.31224 5.60298 5.85071 6.12315 6.26016 6.46289 6.81121 6.93466 7.13321 7.20196 7.42453 8.97146 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.005822 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.380864 B = 4808.445229 C = 6160.334062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.088 3.912 4 H 0.122 0.878 5 C -0.165 4.165 6 C 0.507 3.493 7 O -0.541 6.541 8 N -0.585 5.585 9 C 0.082 3.918 10 C -0.094 4.094 11 C -0.130 4.130 12 H 0.123 0.877 13 C -0.104 4.104 14 C 0.019 3.981 15 C 0.570 3.430 16 O -0.606 6.606 17 N -0.614 5.614 18 C 0.133 3.867 19 C 0.038 3.962 20 C -0.537 4.537 21 H 0.066 0.934 22 C 0.022 3.978 23 N -0.909 5.909 24 Si 0.962 3.038 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.263 1.263 28 C 0.100 3.900 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.036 0.964 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.022 0.978 44 H 0.263 0.737 45 H 0.089 0.911 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 19.129 3.351 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.027 3.973 4 H 0.139 0.861 5 C -0.222 4.222 6 C 0.296 3.704 7 O -0.415 6.415 8 N -0.322 5.322 9 C -0.038 4.038 10 C -0.132 4.132 11 C -0.149 4.149 12 H 0.141 0.859 13 C -0.142 4.142 14 C -0.071 4.071 15 C 0.361 3.639 16 O -0.489 6.489 17 N -0.344 5.344 18 C 0.011 3.989 19 C 0.019 3.981 20 C -0.575 4.575 21 H 0.084 0.916 22 C -0.179 4.179 23 N -0.546 5.546 24 Si 0.787 3.213 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.188 1.188 28 C -0.023 4.023 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.099 0.901 39 H 0.156 0.844 40 H 0.125 0.875 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.107 0.893 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.874 18.146 4.009 21.044 hybrid contribution 0.414 -1.111 -0.566 1.314 sum -9.460 17.035 3.443 19.787 Atomic orbital electron populations 1.23081 0.78531 1.03930 1.01650 1.88115 1.22163 1.26781 1.95128 1.21925 0.91217 0.86752 0.97367 0.86089 1.22246 1.04315 1.01937 0.93699 1.21025 0.87676 0.82627 0.79047 1.90885 1.64167 1.31136 1.55333 1.48250 1.24391 1.07316 1.52258 1.23151 0.98332 0.78128 1.04208 1.22351 0.91535 1.01426 0.97841 1.24054 1.01405 0.92387 0.97098 0.85906 1.23451 1.04672 0.94595 0.91509 1.21440 0.89324 0.90420 1.05879 1.19240 0.79821 0.82974 0.81901 1.90572 1.60678 1.70148 1.27490 1.49528 1.45273 1.31674 1.07950 1.23049 0.99102 1.00077 0.76709 1.19953 0.93917 0.92428 0.91829 1.21175 0.93497 1.47711 0.95098 0.91610 1.25838 0.95647 0.94546 1.01901 1.70166 1.08108 1.48376 1.27986 0.85563 0.78374 0.79055 0.78327 1.19910 1.20915 1.18813 1.23263 0.95631 0.86654 0.96736 0.92066 0.91685 0.89384 0.88946 0.94505 0.88376 0.86872 0.87349 0.84865 0.90056 0.84427 0.87539 0.92759 0.91423 0.96019 0.92855 0.89330 0.94178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.82 113.37 1.23 1.76 16 2 O -0.40 -14.34 9.93 -130.46 -1.30 -15.64 16 3 C 0.09 2.55 2.41 29.85 0.07 2.62 16 4 H 0.12 2.26 7.62 -2.39 -0.02 2.24 16 5 C -0.16 -4.24 9.29 71.98 0.67 -3.57 16 6 C 0.51 19.19 5.20 87.66 0.46 19.65 16 7 O -0.54 -27.98 12.16 15.51 0.19 -27.79 16 8 N -0.59 -17.17 3.13 -768.16 -2.40 -19.58 16 9 C 0.08 1.21 6.14 86.61 0.53 1.74 16 10 C -0.09 -1.26 7.00 31.71 0.22 -1.04 16 11 C -0.13 -2.78 7.09 -9.83 -0.07 -2.85 16 12 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 13 C -0.10 -2.33 9.42 30.59 0.29 -2.05 16 14 C 0.02 0.61 3.10 2.98 0.01 0.62 16 15 C 0.57 26.35 6.40 87.66 0.56 26.91 16 16 O -0.61 -31.69 17.51 -3.04 -0.05 -31.74 16 17 N -0.61 -29.96 2.74 -858.86 -2.35 -32.31 16 18 C 0.13 6.56 6.79 83.09 0.56 7.12 16 19 C 0.04 2.13 3.53 -11.29 -0.04 2.09 16 20 C -0.54 -30.22 8.84 25.60 0.23 -29.99 16 21 H 0.07 3.54 7.81 -2.91 -0.02 3.51 16 22 C 0.02 1.20 5.46 84.65 0.46 1.66 16 23 N -0.91 -53.68 13.26 21.45 0.28 -53.40 16 24 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 28 C 0.10 5.05 8.19 83.18 0.68 5.73 16 29 H 0.06 1.06 8.08 -2.39 -0.02 1.04 16 30 H 0.06 1.12 8.03 -2.39 -0.02 1.10 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.09 1.85 6.05 -2.39 -0.01 1.84 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 1.84 8.03 -2.39 -0.02 1.82 16 35 H 0.11 1.18 5.50 -2.39 -0.01 1.17 16 36 H 0.11 0.97 7.30 -2.39 -0.02 0.95 16 37 H 0.13 0.72 8.14 -2.38 -0.02 0.71 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.14 2.08 7.16 -2.38 -0.02 2.06 16 40 H 0.11 2.64 8.04 -2.39 -0.02 2.62 16 41 H 0.05 2.73 5.20 -2.39 -0.01 2.72 16 42 H 0.07 3.18 8.10 -2.39 -0.02 3.16 16 43 H 0.02 1.43 7.86 -2.39 -0.02 1.41 16 44 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.09 4.08 8.10 -2.39 -0.02 4.06 16 46 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -88.28 369.28 3.24 -85.04 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.98 Total: 19.84 kcal Atomic # 6 Polarization: 24.54 SS G_CDS: 5.86 Total: 30.40 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -4.47 Total: -105.29 kcal Atomic # 8 Polarization: -74.01 SS G_CDS: -1.16 Total: -75.17 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -88.28 3.24 -85.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271752469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.609 kcal (2) G-P(sol) polarization free energy of solvation -88.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds