Wall clock time and date at job start Fri Apr 10 2020 14:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47143 * 2 1 4 4 C 1.37099 * 119.99958 * 264.77241 * 3 2 1 5 5 H 1.08001 * 120.00003 * 138.85244 * 4 3 2 6 6 C 1.38947 * 120.00075 * 318.85085 * 4 3 2 7 7 N 1.31412 * 120.00214 * 341.82608 * 6 4 3 8 8 Si 1.86801 * 120.00278 * 161.82641 * 6 4 3 9 9 H 1.48501 * 109.46937 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47360 * 119.99678 * 8 6 4 11 11 H 1.48494 * 109.47254 * 240.00418 * 8 6 4 12 12 C 1.34777 * 120.00068 * 84.76807 * 3 2 1 13 13 O 1.21297 * 119.99927 * 179.97438 * 12 3 2 14 14 C 1.50697 * 119.99930 * 0.02562 * 12 3 2 15 15 C 1.53005 * 109.47028 * 179.97438 * 14 12 3 16 16 N 1.46500 * 109.47072 * 179.97438 * 15 14 12 17 17 C 1.36043 * 123.28969 * 269.71195 * 16 15 14 18 18 O 1.21226 * 126.99266 * 12.93527 * 17 16 15 19 19 C 1.49591 * 106.01339 * 192.96085 * 17 16 15 20 20 H 1.09003 * 110.57598 * 85.04622 * 19 17 16 21 21 C 1.51317 * 119.39954 * 214.07580 * 19 17 16 22 22 C 1.54183 * 106.19599 * 178.30169 * 21 19 17 23 23 C 1.52473 * 111.88700 * 302.48966 * 22 21 19 24 24 C 1.53994 * 112.10537 * 53.05005 * 23 22 21 25 25 C 1.51027 * 106.70533 * 303.65315 * 24 23 22 26 26 H 1.09001 * 109.83135 * 306.24660 * 25 24 23 27 27 C 1.36061 * 123.28257 * 90.00220 * 16 15 14 28 28 O 1.21237 * 127.00736 * 12.38716 * 27 16 15 29 29 H 1.08998 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47116 * 300.00055 * 1 2 3 31 31 H 1.09000 * 109.47496 * 59.99779 * 1 2 3 32 32 H 1.09005 * 109.46731 * 240.00268 * 2 1 3 33 33 H 1.08993 * 109.47175 * 120.00013 * 2 1 3 34 34 H 0.96996 * 120.00322 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46777 * 59.99781 * 14 12 3 36 36 H 1.08996 * 109.47278 * 299.99610 * 14 12 3 37 37 H 1.09000 * 109.46614 * 60.00169 * 15 14 12 38 38 H 1.08996 * 109.47309 * 300.00248 * 15 14 12 39 39 H 1.09002 * 110.10172 * 59.13570 * 21 19 17 40 40 H 1.09003 * 110.10329 * 297.47363 * 21 19 17 41 41 H 1.09002 * 109.00164 * 181.86344 * 22 21 19 42 42 H 1.08998 * 108.99556 * 63.10711 * 22 21 19 43 43 H 1.08995 * 108.95704 * 292.37196 * 23 22 21 44 44 H 1.09008 * 108.95402 * 173.72248 * 23 22 21 45 45 H 1.08993 * 110.00632 * 184.35792 * 24 23 22 46 46 H 1.08992 * 110.08488 * 62.99278 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9914 -1.1824 5 1 2.0742 3.0218 -1.3535 6 6 3.0370 1.2842 -2.1606 7 7 3.6791 0.1818 -1.8452 8 14 3.0497 1.9004 -3.9240 9 1 2.2582 3.1535 -4.0161 10 1 4.4485 2.1670 -4.3452 11 1 2.4528 0.8710 -4.8123 12 6 2.1426 2.0520 1.1623 13 8 2.5474 3.1955 1.1623 14 6 1.7798 1.3811 2.4620 15 6 2.0117 2.3537 3.6202 16 7 1.6584 1.7017 4.8836 17 6 0.4122 1.7520 5.4269 18 8 -0.6057 2.1244 4.8840 19 6 0.5537 1.2548 6.8307 20 1 0.8533 2.0648 7.4956 21 6 -0.5750 0.4645 7.4560 22 6 -0.0954 0.0736 8.8683 23 6 1.2047 -0.7220 8.8271 24 6 2.3007 0.0002 8.0217 25 6 1.7326 0.2534 6.6455 26 1 1.3678 -0.6808 6.2184 27 6 2.5462 0.9915 5.6311 28 8 3.7512 0.9627 5.5009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 4.1593 -0.3120 -2.5281 35 1 2.4019 0.4968 2.6004 36 1 0.7305 1.0871 2.4386 37 1 1.3899 3.2382 3.4818 38 1 3.0611 2.6474 3.6434 39 1 -0.7764 -0.4308 6.8677 40 1 -1.4720 1.0803 7.5221 41 1 -0.8652 -0.5291 9.3504 42 1 0.0616 0.9798 9.4531 43 1 1.0115 -1.6927 8.3706 44 1 1.5580 -0.8760 9.8468 45 1 3.1867 -0.6303 7.9491 46 1 2.5547 0.9461 8.5000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:33 Heat of formation + Delta-G solvation = -104.410507 kcal Electronic energy + Delta-G solvation = -28192.743710 eV Core-core repulsion = 24275.414448 eV Total energy + Delta-G solvation = -3917.329262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.27760 -38.70468 -38.56835 -37.96428 -35.82539 -34.98803 -32.83352 -31.97063 -31.37767 -29.79789 -29.41204 -25.78228 -25.41567 -24.19073 -22.55229 -22.10557 -21.99688 -20.65895 -19.34582 -18.77529 -17.39473 -17.15506 -16.67813 -16.06450 -15.87357 -15.36839 -15.11075 -15.01089 -14.67709 -14.39248 -14.31962 -14.03996 -13.88951 -13.63185 -13.24954 -13.04750 -12.85414 -12.70130 -12.53633 -12.09589 -11.80509 -11.71203 -11.68667 -11.56458 -11.50299 -11.12633 -11.06916 -10.95837 -10.89975 -10.88655 -10.35280 -10.28928 -10.11104 -10.08297 -9.95935 -9.59480 -8.92055 -8.41694 -7.42153 -6.30984 -3.99667 1.46739 2.44774 2.50480 3.17176 3.27411 3.33926 3.51823 3.90772 4.00287 4.04596 4.17428 4.45506 4.63302 4.63826 4.73373 4.83740 4.86383 4.89364 4.99990 5.02805 5.28997 5.31570 5.37340 5.38401 5.46421 5.61294 5.61735 5.65165 5.69289 5.74406 5.81176 5.83450 5.92649 5.99203 6.08033 6.23416 6.31720 6.38429 6.53144 6.80376 6.87395 7.21670 7.23939 7.59849 7.74538 8.30593 8.51481 9.19533 9.39973 10.01294 10.74271 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.024800 B = 0.002943 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.747276 B = 9510.879640 C = 9697.701987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.439 5.439 4 C -0.308 4.308 5 H 0.089 0.911 6 C 0.038 3.962 7 N -0.871 5.871 8 Si 0.918 3.082 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.468 3.532 13 O -0.582 6.582 14 C -0.150 4.150 15 C 0.120 3.880 16 N -0.591 5.591 17 C 0.540 3.460 18 O -0.466 6.466 19 C -0.132 4.132 20 H 0.122 0.878 21 C -0.097 4.097 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.097 4.097 25 C -0.133 4.133 26 H 0.122 0.878 27 C 0.540 3.460 28 O -0.465 6.465 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.267 0.733 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 -5.610 21.141 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.158 5.158 4 C -0.436 4.436 5 H 0.107 0.893 6 C -0.166 4.166 7 N -0.509 5.509 8 Si 0.745 3.255 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.255 3.745 13 O -0.466 6.466 14 C -0.191 4.191 15 C -0.001 4.001 16 N -0.336 5.336 17 C 0.329 3.671 18 O -0.336 6.336 19 C -0.154 4.154 20 H 0.140 0.860 21 C -0.135 4.135 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.135 4.135 25 C -0.154 4.154 26 H 0.140 0.860 27 C 0.328 3.672 28 O -0.334 6.334 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.302 -4.986 20.614 22.431 hybrid contribution 0.111 0.031 -1.080 1.086 sum -7.191 -4.955 19.534 21.398 Atomic orbital electron populations 1.22224 0.98139 1.00359 1.01634 1.21456 0.91643 0.85608 1.03388 1.43435 1.55871 1.11726 1.04803 1.19430 1.34816 0.98589 0.90811 0.89342 1.25438 0.94022 0.96554 1.00616 1.69937 1.29491 1.17575 1.33895 0.86001 0.78140 0.79019 0.82345 1.19167 1.20736 1.20628 1.20048 0.82040 0.87859 0.84542 1.90527 1.50420 1.18712 1.86895 1.21939 1.03009 0.99658 0.94479 1.21537 1.03779 0.95451 0.79331 1.48113 1.11888 1.50041 1.23591 1.20590 0.81996 0.76230 0.88312 1.90769 1.30205 1.43387 1.69214 1.22195 0.98671 0.99494 0.94998 0.85992 1.21308 0.96566 0.99660 0.96005 1.21640 0.97217 1.00673 0.96196 1.21599 0.94406 0.99194 1.00543 1.21185 0.98602 1.02049 0.91643 1.22130 0.96155 0.99915 0.97233 0.85991 1.20590 0.86479 0.78273 0.81817 1.90782 1.12234 1.61188 1.69213 0.93109 0.93839 0.92319 0.87812 0.93527 0.92316 0.89942 0.89783 0.88630 0.88181 0.90649 0.90110 0.91190 0.91669 0.91595 0.91203 0.90084 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 10.15 37.16 0.38 -2.68 16 2 C 0.10 2.28 5.41 -4.04 -0.02 2.26 16 3 N -0.44 -11.37 2.50 -114.82 -0.29 -11.66 16 4 C -0.31 -8.71 8.84 -14.93 -0.13 -8.84 16 5 H 0.09 2.61 7.82 -52.49 -0.41 2.20 16 6 C 0.04 1.02 4.95 -17.47 -0.09 0.94 16 7 N -0.87 -23.94 11.61 55.50 0.64 -23.29 16 8 Si 0.92 20.94 29.59 -169.99 -5.03 15.91 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.47 11.71 7.59 -10.99 -0.08 11.62 16 13 O -0.58 -16.41 15.89 5.54 0.09 -16.32 16 14 C -0.15 -2.90 4.63 -27.88 -0.13 -3.03 16 15 C 0.12 2.11 5.02 -4.04 -0.02 2.09 16 16 N -0.59 -8.38 2.67 -115.52 -0.31 -8.69 16 17 C 0.54 6.92 7.71 -10.94 -0.08 6.84 16 18 O -0.47 -7.44 17.83 5.60 0.10 -7.34 16 19 C -0.13 -1.11 2.42 -91.67 -0.22 -1.33 16 20 H 0.12 0.86 7.82 -51.93 -0.41 0.45 16 21 C -0.10 -0.62 5.86 -26.96 -0.16 -0.78 16 22 C -0.12 -0.56 5.79 -26.38 -0.15 -0.71 16 23 C -0.12 -0.57 5.81 -26.48 -0.15 -0.73 16 24 C -0.10 -0.63 5.84 -27.20 -0.16 -0.79 16 25 C -0.13 -1.15 2.36 -91.84 -0.22 -1.37 16 26 H 0.12 0.94 7.81 -51.93 -0.41 0.53 16 27 C 0.54 7.12 7.75 -10.97 -0.08 7.03 16 28 O -0.46 -7.73 17.68 5.59 0.10 -7.63 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.77 6.60 -51.92 -0.34 0.43 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.10 2.52 5.76 -51.93 -0.30 2.22 16 33 H 0.05 0.95 6.66 -51.93 -0.35 0.60 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.08 1.55 7.41 -51.93 -0.38 1.17 16 36 H 0.08 1.53 6.54 -51.93 -0.34 1.19 16 37 H 0.10 1.74 8.03 -51.93 -0.42 1.32 16 38 H 0.10 1.89 7.85 -51.93 -0.41 1.48 16 39 H 0.07 0.48 7.90 -51.93 -0.41 0.07 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -33.85 370.81 -7.53 -41.39 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.10 Total: 1.52 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -1.33 Total: 10.53 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.05 Total: -43.64 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: 0.29 Total: -31.29 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.85 -7.53 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.024 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds