Wall clock time and date at job start Fri Apr 10 2020 14:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47143 * 2 1 4 4 C 1.37099 * 119.99958 * 264.77241 * 3 2 1 5 5 H 1.08001 * 120.00003 * 138.85244 * 4 3 2 6 6 C 1.38947 * 120.00075 * 318.85085 * 4 3 2 7 7 N 1.31412 * 120.00214 * 341.82608 * 6 4 3 8 8 Si 1.86801 * 120.00278 * 161.82641 * 6 4 3 9 9 H 1.48501 * 109.46937 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47360 * 119.99678 * 8 6 4 11 11 H 1.48494 * 109.47254 * 240.00418 * 8 6 4 12 12 C 1.34777 * 120.00068 * 84.76807 * 3 2 1 13 13 O 1.21297 * 119.99927 * 179.97438 * 12 3 2 14 14 C 1.50697 * 119.99930 * 0.02562 * 12 3 2 15 15 C 1.53005 * 109.47028 * 179.97438 * 14 12 3 16 16 N 1.46500 * 109.47072 * 179.97438 * 15 14 12 17 17 C 1.36043 * 123.28969 * 269.71195 * 16 15 14 18 18 O 1.21226 * 126.99266 * 12.93527 * 17 16 15 19 19 C 1.49591 * 106.01339 * 192.96085 * 17 16 15 20 20 H 1.09003 * 110.57598 * 85.04622 * 19 17 16 21 21 C 1.51317 * 119.39954 * 214.07580 * 19 17 16 22 22 C 1.54183 * 106.19599 * 178.30169 * 21 19 17 23 23 C 1.52473 * 111.88700 * 302.48966 * 22 21 19 24 24 C 1.53994 * 112.10537 * 53.05005 * 23 22 21 25 25 C 1.51027 * 106.70533 * 303.65315 * 24 23 22 26 26 H 1.09001 * 109.83135 * 306.24660 * 25 24 23 27 27 C 1.36061 * 123.28257 * 90.00220 * 16 15 14 28 28 O 1.21237 * 127.00736 * 12.38716 * 27 16 15 29 29 H 1.08998 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47116 * 300.00055 * 1 2 3 31 31 H 1.09000 * 109.47496 * 59.99779 * 1 2 3 32 32 H 1.09005 * 109.46731 * 240.00268 * 2 1 3 33 33 H 1.08993 * 109.47175 * 120.00013 * 2 1 3 34 34 H 0.96996 * 120.00322 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46777 * 59.99781 * 14 12 3 36 36 H 1.08996 * 109.47278 * 299.99610 * 14 12 3 37 37 H 1.09000 * 109.46614 * 60.00169 * 15 14 12 38 38 H 1.08996 * 109.47309 * 300.00248 * 15 14 12 39 39 H 1.09002 * 110.10172 * 59.13570 * 21 19 17 40 40 H 1.09003 * 110.10329 * 297.47363 * 21 19 17 41 41 H 1.09002 * 109.00164 * 181.86344 * 22 21 19 42 42 H 1.08998 * 108.99556 * 63.10711 * 22 21 19 43 43 H 1.08995 * 108.95704 * 292.37196 * 23 22 21 44 44 H 1.09008 * 108.95402 * 173.72248 * 23 22 21 45 45 H 1.08993 * 110.00632 * 184.35792 * 24 23 22 46 46 H 1.08992 * 110.08488 * 62.99278 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9914 -1.1824 5 1 2.0742 3.0218 -1.3535 6 6 3.0370 1.2842 -2.1606 7 7 3.6791 0.1818 -1.8452 8 14 3.0497 1.9004 -3.9240 9 1 2.2582 3.1535 -4.0161 10 1 4.4485 2.1670 -4.3452 11 1 2.4528 0.8710 -4.8123 12 6 2.1426 2.0520 1.1623 13 8 2.5474 3.1955 1.1623 14 6 1.7798 1.3811 2.4620 15 6 2.0117 2.3537 3.6202 16 7 1.6584 1.7017 4.8836 17 6 0.4122 1.7520 5.4269 18 8 -0.6057 2.1244 4.8840 19 6 0.5537 1.2548 6.8307 20 1 0.8533 2.0648 7.4956 21 6 -0.5750 0.4645 7.4560 22 6 -0.0954 0.0736 8.8683 23 6 1.2047 -0.7220 8.8271 24 6 2.3007 0.0002 8.0217 25 6 1.7326 0.2534 6.6455 26 1 1.3678 -0.6808 6.2184 27 6 2.5462 0.9915 5.6311 28 8 3.7512 0.9627 5.5009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 4.1593 -0.3120 -2.5281 35 1 2.4019 0.4968 2.6004 36 1 0.7305 1.0871 2.4386 37 1 1.3899 3.2382 3.4818 38 1 3.0611 2.6474 3.6434 39 1 -0.7764 -0.4308 6.8677 40 1 -1.4720 1.0803 7.5221 41 1 -0.8652 -0.5291 9.3504 42 1 0.0616 0.9798 9.4531 43 1 1.0115 -1.6927 8.3706 44 1 1.5580 -0.8760 9.8468 45 1 3.1867 -0.6303 7.9491 46 1 2.5547 0.9461 8.5000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:32 Heat of formation + Delta-G solvation = -125.492338 kcal Electronic energy + Delta-G solvation = -28193.657887 eV Core-core repulsion = 24275.414448 eV Total energy + Delta-G solvation = -3918.243439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.25831 -40.57911 -39.71276 -38.76229 -37.18838 -36.80737 -34.32429 -33.64104 -31.91975 -31.25102 -30.88333 -27.48377 -26.30463 -25.66104 -24.01715 -23.22629 -22.90936 -21.19276 -20.72935 -20.26547 -18.87186 -18.42837 -18.28565 -17.41901 -17.12383 -16.92887 -16.36814 -16.18015 -16.00654 -15.94879 -15.60521 -14.94324 -14.74148 -14.70573 -14.57344 -14.36152 -14.29885 -13.86139 -13.67881 -13.49346 -13.43473 -13.20728 -12.88547 -12.70570 -12.57555 -12.44376 -12.29171 -12.20954 -12.08805 -12.04115 -11.82728 -11.80010 -11.34710 -11.06587 -10.93874 -10.88258 -10.77057 -10.42002 -9.46835 -8.38300 -6.15831 0.41835 1.33171 1.34225 1.39513 1.44127 1.53340 1.95343 2.27079 2.75283 2.96293 3.00571 3.24874 3.28074 3.75087 3.75794 3.89525 3.93459 4.07766 4.14437 4.16811 4.18844 4.31658 4.36383 4.42318 4.46322 4.48666 4.53109 4.59381 4.78237 4.82630 4.84985 4.88733 4.98072 5.14131 5.19695 5.22995 5.25565 5.36306 5.41530 5.41772 5.48273 5.57196 5.67810 6.19080 6.20471 6.47889 6.65139 7.11888 7.38231 7.98518 8.65952 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.024800 B = 0.002943 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.747276 B = 9510.879640 C = 9697.701987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.102 3.898 3 N -0.451 5.451 4 C -0.344 4.344 5 H 0.062 0.938 6 C 0.004 3.996 7 N -0.891 5.891 8 Si 0.984 3.016 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.261 1.261 12 C 0.451 3.549 13 O -0.626 6.626 14 C -0.129 4.129 15 C 0.128 3.872 16 N -0.595 5.595 17 C 0.539 3.461 18 O -0.500 6.500 19 C -0.118 4.118 20 H 0.142 0.858 21 C -0.096 4.096 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.096 4.096 25 C -0.120 4.120 26 H 0.139 0.861 27 C 0.537 3.463 28 O -0.505 6.505 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.274 0.726 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.049 -7.565 22.931 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 N -0.170 5.170 4 C -0.472 4.472 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.528 5.528 8 Si 0.808 3.192 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.186 1.186 12 C 0.240 3.760 13 O -0.513 6.513 14 C -0.170 4.170 15 C 0.006 3.994 16 N -0.340 5.340 17 C 0.330 3.670 18 O -0.372 6.372 19 C -0.139 4.139 20 H 0.159 0.841 21 C -0.134 4.134 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.134 4.134 25 C -0.141 4.141 26 H 0.157 0.843 27 C 0.328 3.672 28 O -0.377 6.377 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.641 -6.992 22.436 25.039 hybrid contribution 0.564 0.648 -1.641 1.852 sum -8.077 -6.344 20.795 23.193 Atomic orbital electron populations 1.22105 0.95128 1.02636 1.01268 1.21569 0.94066 0.83456 1.03019 1.43745 1.55746 1.12993 1.04520 1.19402 1.36809 0.98255 0.92752 0.91992 1.26208 0.92953 0.96560 1.04136 1.69999 1.29312 1.18178 1.35350 0.85030 0.78103 0.78730 0.77379 1.19506 1.20422 1.18581 1.20924 0.81326 0.87579 0.86145 1.90481 1.52314 1.20718 1.87787 1.21750 1.03816 0.99490 0.91956 1.21145 1.02395 0.95062 0.80843 1.48269 1.13086 1.50208 1.22445 1.21390 0.80707 0.75117 0.89779 1.90752 1.31173 1.44928 1.70325 1.22275 0.99556 1.00054 0.92022 0.84065 1.21384 0.95650 0.99358 0.96985 1.21625 0.97434 1.01284 0.94854 1.21583 0.93628 0.99058 1.00943 1.21262 0.99233 1.02615 0.90257 1.22207 0.94931 0.99771 0.97199 0.84308 1.21443 0.86057 0.77598 0.82067 1.90761 1.14116 1.62391 1.70425 0.89421 0.93194 0.93671 0.89937 0.91991 0.91630 0.89190 0.88162 0.89778 0.90168 0.90340 0.90057 0.89777 0.90912 0.91045 0.89799 0.90361 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 10.15 71.98 0.73 -4.74 16 2 C 0.10 4.51 5.41 86.38 0.47 4.98 16 3 N -0.45 -24.06 2.50 -635.55 -1.59 -25.65 16 4 C -0.34 -20.14 8.84 84.04 0.74 -19.39 16 5 H 0.06 3.87 7.82 -2.91 -0.02 3.84 16 6 C 0.00 0.23 4.95 84.93 0.42 0.65 16 7 N -0.89 -49.29 11.61 21.66 0.25 -49.04 16 8 Si 0.98 43.32 29.59 68.60 2.03 45.35 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 12 C 0.45 23.48 7.59 87.66 0.67 24.14 16 13 O -0.63 -37.31 15.89 -3.08 -0.05 -37.35 16 14 C -0.13 -5.10 4.63 29.85 0.14 -4.96 16 15 C 0.13 4.69 5.02 86.38 0.43 5.12 16 16 N -0.60 -16.83 2.67 -754.77 -2.02 -18.84 16 17 C 0.54 13.30 7.71 87.11 0.67 13.98 16 18 O -0.50 -15.73 17.83 -2.86 -0.05 -15.79 16 19 C -0.12 -1.69 2.42 -11.47 -0.03 -1.72 16 20 H 0.14 1.56 7.82 -2.39 -0.02 1.54 16 21 C -0.10 -0.91 5.86 30.44 0.18 -0.73 16 22 C -0.11 -0.59 5.79 30.82 0.18 -0.41 16 23 C -0.11 -0.63 5.81 30.76 0.18 -0.45 16 24 C -0.10 -0.97 5.84 30.29 0.18 -0.79 16 25 C -0.12 -1.80 2.36 -11.59 -0.03 -1.83 16 26 H 0.14 1.70 7.81 -2.39 -0.02 1.68 16 27 C 0.54 13.86 7.75 87.09 0.67 14.53 16 28 O -0.51 -17.00 17.68 -2.90 -0.05 -17.05 16 29 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.05 1.70 6.60 -2.38 -0.02 1.69 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 4.02 5.76 -2.38 -0.01 4.01 16 33 H 0.06 2.49 6.66 -2.39 -0.02 2.48 16 34 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 35 H 0.09 3.40 7.41 -2.39 -0.02 3.39 16 36 H 0.10 3.61 6.54 -2.39 -0.02 3.60 16 37 H 0.08 3.24 8.03 -2.39 -0.02 3.22 16 38 H 0.08 3.23 7.85 -2.39 -0.02 3.21 16 39 H 0.08 0.73 7.90 -2.39 -0.02 0.71 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 45 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.08 0.74 7.94 -2.39 -0.02 0.72 16 Total: -1.00 -77.31 370.81 5.10 -72.21 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.98 Total: 17.80 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: 5.60 Total: 28.37 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -3.36 Total: -93.54 kcal Atomic # 8 Polarization: -70.04 SS G_CDS: -0.15 Total: -70.19 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -77.31 5.10 -72.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.287 kcal (2) G-P(sol) polarization free energy of solvation -77.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds