Wall clock time and date at job start Fri Apr 10 2020 14:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46496 * 119.99619 * 89.99960 * 3 2 1 5 5 C 1.50707 * 109.47188 * 90.00204 * 4 3 2 6 6 H 1.07994 * 119.99863 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99908 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00198 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99704 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47026 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46805 * 120.00118 * 9 7 5 12 12 H 1.48501 * 109.47244 * 239.99866 * 9 7 5 13 13 C 1.34774 * 120.00261 * 270.00136 * 3 2 1 14 14 O 1.21270 * 120.00172 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99638 * 359.97438 * 13 3 2 16 16 N 1.46502 * 109.46929 * 180.02562 * 15 13 3 17 17 C 1.34334 * 122.84050 * 269.71284 * 16 15 13 18 18 O 1.21232 * 125.95104 * 357.02713 * 17 16 15 19 19 C 1.50686 * 108.09077 * 176.91351 * 17 16 15 20 20 H 1.09007 * 105.82017 * 256.30473 * 19 17 16 21 21 C 1.49435 * 113.20428 * 140.29005 * 19 17 16 22 22 C 1.52514 * 113.29786 * 267.14831 * 21 19 17 23 23 C 1.53453 * 107.59795 * 305.23784 * 22 21 19 24 24 C 1.51414 * 108.63406 * 67.96862 * 23 22 21 25 25 C 1.51226 * 105.06696 * 8.14581 * 19 17 16 26 26 H 1.08995 * 109.81656 * 233.92758 * 25 19 17 27 27 C 1.34042 * 122.84162 * 89.99456 * 16 15 13 28 28 O 1.21219 * 125.59658 * 356.79282 * 27 16 15 29 29 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 31 31 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 34 34 H 1.09006 * 109.47349 * 209.99918 * 4 3 2 35 35 H 1.09003 * 109.47665 * 330.00083 * 4 3 2 36 36 H 0.97004 * 120.00297 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46731 * 300.00166 * 15 13 3 38 38 H 1.08993 * 109.47109 * 60.00140 * 15 13 3 39 39 H 1.09005 * 108.71443 * 28.13462 * 21 19 17 40 40 H 1.09005 * 108.71648 * 146.15992 * 21 19 17 41 41 H 1.08999 * 109.83749 * 64.76540 * 22 21 19 42 42 H 1.09007 * 109.83327 * 185.65196 * 22 21 19 43 43 H 1.09000 * 109.75469 * 188.16949 * 23 22 21 44 44 H 1.08999 * 109.75246 * 308.91361 * 23 22 21 45 45 H 1.08998 * 109.78336 * 180.93215 * 24 23 22 46 46 H 1.08995 * 107.32921 * 62.97418 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6858 1.8349 1.7038 6 1 4.3426 1.2302 1.0962 7 6 4.1494 2.3904 2.8775 8 7 3.3497 3.1272 3.6172 9 14 5.9134 2.0962 3.4171 10 1 6.6007 1.2403 2.4171 11 1 6.6215 3.3971 3.5248 12 1 5.9205 1.4180 4.7382 13 6 2.2430 2.0166 -1.1671 14 8 2.6477 3.1598 -1.1671 15 6 1.9923 1.3060 -2.4723 16 7 2.3101 2.2034 -3.5858 17 6 1.4026 3.0218 -4.1437 18 8 0.2288 3.0898 -3.8484 19 6 2.0986 3.8427 -5.1984 20 1 2.2366 4.8320 -4.7620 21 6 1.2754 4.0390 -6.4300 22 6 1.5380 2.9893 -7.5048 23 6 3.0450 2.9886 -7.7943 24 6 3.7713 2.4567 -6.5768 25 6 3.4820 3.2429 -5.3139 26 1 4.2342 4.0207 -5.1824 27 6 3.5296 2.2734 -4.1378 28 8 4.5093 1.6654 -3.7638 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0955 3.1411 1.1385 35 1 1.5817 1.6877 2.0284 36 1 3.6757 3.5177 4.4431 37 1 2.6229 0.4187 -2.5298 38 1 0.9445 1.0115 -2.5302 39 1 0.2211 4.0025 -6.1555 40 1 1.4929 5.0242 -6.8427 41 1 1.2299 2.0073 -7.1458 42 1 0.9865 3.2414 -8.4106 43 1 3.2541 2.3562 -8.6571 44 1 3.3826 4.0059 -7.9919 45 1 4.8464 2.4636 -6.7563 46 1 3.4483 1.4260 -6.4307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121545762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:06 Heat of formation + Delta-G solvation = -106.939579 kcal Electronic energy + Delta-G solvation = -28641.178823 eV Core-core repulsion = 24723.739892 eV Total energy + Delta-G solvation = -3917.438931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.38014 -39.14435 -38.60896 -37.68150 -35.70547 -35.24263 -32.89890 -32.23139 -31.67764 -30.14650 -28.71623 -26.56051 -25.26297 -23.60514 -23.05753 -22.60632 -22.49931 -20.29388 -19.29684 -18.53825 -17.53323 -16.87621 -16.52616 -16.41162 -16.24417 -15.69275 -15.01343 -14.94916 -14.79839 -14.54764 -14.47365 -14.06584 -13.58907 -13.45851 -13.33765 -13.17814 -13.12916 -12.82266 -12.65324 -12.30514 -12.05808 -11.91218 -11.70643 -11.60451 -11.22370 -11.14654 -10.91525 -10.84224 -10.75722 -10.59514 -10.56083 -10.32641 -10.16470 -10.11935 -9.86748 -9.62346 -8.88747 -8.43781 -7.73473 -6.04474 -4.09073 1.54666 2.37761 2.71284 3.25208 3.30500 3.38217 3.43895 3.80444 3.85987 3.99868 4.13099 4.33766 4.45469 4.61329 4.70015 4.83327 4.92534 4.98747 5.08886 5.11632 5.16376 5.17052 5.30133 5.36685 5.38684 5.42016 5.54263 5.59427 5.62665 5.66157 5.72739 5.74453 5.83983 5.91718 5.99724 6.00672 6.20526 6.47033 6.80125 7.00434 7.31863 7.41309 7.49392 7.77427 7.91916 8.22344 8.32002 8.84966 9.00421 9.56003 11.03702 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017445 B = 0.003606 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.684239 B = 7763.787437 C = 8497.881549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.496 3.504 14 O -0.534 6.534 15 C 0.076 3.924 16 N -0.557 5.557 17 C 0.540 3.460 18 O -0.477 6.477 19 C -0.118 4.118 20 H 0.114 0.886 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.103 4.103 25 C -0.102 4.102 26 H 0.122 0.878 27 C 0.531 3.469 28 O -0.471 6.471 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.034 0.966 36 H 0.263 0.737 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 -3.378 -23.089 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.323 5.323 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.281 3.719 14 O -0.411 6.411 15 C -0.049 4.049 16 N -0.299 5.299 17 C 0.329 3.671 18 O -0.348 6.348 19 C -0.139 4.139 20 H 0.132 0.868 21 C -0.138 4.138 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.124 4.124 26 H 0.140 0.860 27 C 0.319 3.681 28 O -0.341 6.341 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.815 -2.973 -22.469 23.171 hybrid contribution 0.990 -0.186 0.851 1.319 sum -3.825 -3.159 -21.618 22.180 Atomic orbital electron populations 1.22236 0.96484 1.01613 1.02563 1.21490 0.93718 0.83972 1.02933 1.48226 1.63301 1.13324 1.07477 1.19308 0.96441 0.93612 0.77803 1.21474 0.96841 1.31892 1.06283 0.92344 1.24934 0.97914 0.94879 0.96370 1.69945 1.35623 1.33459 1.14348 0.86439 0.84596 0.78104 0.78301 1.19727 1.20869 1.20916 1.20300 0.79170 0.87286 0.85175 1.90672 1.45634 1.17894 1.86916 1.21776 1.04430 0.93371 0.85296 1.46447 1.13167 1.38704 1.31584 1.20649 0.85551 0.78699 0.82163 1.90744 1.14441 1.65155 1.64505 1.20527 0.94470 1.01725 0.97220 0.86792 1.20546 1.00179 1.00296 0.92797 1.21587 0.96321 0.99386 0.98628 1.21329 0.95100 1.02031 0.96968 1.20783 1.01868 0.99211 0.92254 1.21310 0.97944 0.98358 0.94758 0.86002 1.21132 0.81549 0.81980 0.83400 1.90780 1.33456 1.45351 1.64526 0.91829 0.92998 0.91921 0.91826 0.89479 0.93926 0.94755 0.92771 0.86610 0.86568 0.90006 0.90409 0.91758 0.90863 0.91019 0.91239 0.90069 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.10 1.67 5.93 -4.04 -0.02 1.64 16 3 N -0.59 -12.87 2.46 -175.05 -0.43 -13.30 16 4 C 0.25 6.61 5.16 -5.19 -0.03 6.58 16 5 C -0.53 -15.29 9.39 -34.44 -0.32 -15.61 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.50 10.86 7.74 -10.98 -0.09 10.77 16 14 O -0.53 -14.02 16.01 5.57 0.09 -13.93 16 15 C 0.08 1.24 4.62 -5.19 -0.02 1.22 16 16 N -0.56 -8.71 2.06 -116.22 -0.24 -8.95 16 17 C 0.54 7.86 7.61 -11.19 -0.09 7.77 16 18 O -0.48 -8.08 16.95 5.60 0.09 -7.99 16 19 C -0.12 -1.21 2.62 -94.43 -0.25 -1.46 16 20 H 0.11 1.12 8.06 -51.93 -0.42 0.70 16 21 C -0.10 -0.77 5.36 -28.74 -0.15 -0.92 16 22 C -0.12 -0.77 6.07 -26.74 -0.16 -0.94 16 23 C -0.12 -0.68 5.92 -27.30 -0.16 -0.84 16 24 C -0.10 -0.81 5.27 -28.27 -0.15 -0.96 16 25 C -0.10 -1.04 3.30 -92.51 -0.31 -1.35 16 26 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 27 C 0.53 8.00 7.02 -10.42 -0.07 7.92 16 28 O -0.47 -8.64 17.53 5.61 0.10 -8.54 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.69 7.22 -51.93 -0.38 0.32 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 33 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 34 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 35 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.12 1.69 7.14 -51.93 -0.37 1.32 16 38 H 0.12 1.63 6.88 -51.93 -0.36 1.27 16 39 H 0.08 0.71 7.44 -51.93 -0.39 0.33 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 42 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 LS Contribution 374.59 15.07 5.65 5.65 Total: -1.00 -37.10 374.59 -7.77 -44.87 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.21 Total: -2.49 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: -1.54 Total: 13.57 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.07 Total: -48.52 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: 0.28 Total: -30.46 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.10 -7.77 -44.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121545762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.066 kcal (2) G-P(sol) polarization free energy of solvation -37.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds