Wall clock time and date at job start Fri Apr 10 2020 14:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47098 * 2 1 4 4 C 1.46502 * 119.99668 * 269.99619 * 3 2 1 5 5 C 1.50696 * 109.47220 * 270.00076 * 4 3 2 6 6 H 1.08003 * 120.00109 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99831 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99624 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00114 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46757 * 90.00454 * 9 7 5 11 11 H 1.48498 * 109.47060 * 209.99992 * 9 7 5 12 12 H 1.48497 * 109.47007 * 330.00360 * 9 7 5 13 13 C 1.34777 * 120.00280 * 89.99756 * 3 2 1 14 14 O 1.21275 * 119.99971 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99859 * 0.02562 * 13 3 2 16 16 N 1.46494 * 109.46947 * 179.97438 * 15 13 3 17 17 C 1.36065 * 123.28487 * 89.99967 * 16 15 13 18 18 O 1.21233 * 127.00450 * 12.63542 * 17 16 15 19 19 C 1.49536 * 105.98330 * 192.89936 * 17 16 15 20 20 H 1.09007 * 109.84333 * 84.40674 * 19 17 16 21 21 C 1.51028 * 119.72711 * 213.17870 * 19 17 16 22 22 C 1.53987 * 106.70805 * 177.77450 * 21 19 17 23 23 C 1.52472 * 112.11378 * 303.65414 * 22 21 19 24 24 C 1.54093 * 112.03859 * 52.77348 * 23 22 21 25 25 C 1.51319 * 106.44171 * 302.80764 * 24 23 22 26 26 H 1.09003 * 110.50921 * 306.79734 * 25 24 23 27 27 C 1.36049 * 123.28787 * 269.99922 * 16 15 13 28 28 O 1.21217 * 126.99345 * 12.70816 * 27 16 15 29 29 H 1.08999 * 109.46897 * 60.00220 * 1 2 3 30 30 H 1.08998 * 109.47125 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47419 * 300.00197 * 1 2 3 32 32 H 1.09000 * 109.47439 * 239.99287 * 2 1 3 33 33 H 1.09003 * 109.47371 * 119.99745 * 2 1 3 34 34 H 1.09003 * 109.47122 * 30.00263 * 4 3 2 35 35 H 1.09004 * 109.46718 * 149.99881 * 4 3 2 36 36 H 0.97001 * 119.99913 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47097 * 59.99729 * 15 13 3 38 38 H 1.09005 * 109.46913 * 299.99642 * 15 13 3 39 39 H 1.08994 * 110.00532 * 297.07420 * 21 19 17 40 40 H 1.09003 * 110.00030 * 58.48172 * 21 19 17 41 41 H 1.09003 * 108.95619 * 64.33391 * 22 21 19 42 42 H 1.08997 * 108.95532 * 182.97475 * 22 21 19 43 43 H 1.09003 * 109.00281 * 173.66132 * 23 22 21 44 44 H 1.08996 * 109.00007 * 292.42828 * 23 22 21 45 45 H 1.09001 * 110.43001 * 183.31617 * 24 23 22 46 46 H 1.08993 * 109.52427 * 61.81718 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0957 7 6 4.1494 2.3904 -2.8775 8 7 5.3914 2.1832 -3.2573 9 14 3.0131 3.4358 -3.9288 10 1 3.1158 4.8559 -3.5070 11 1 3.4068 3.3134 -5.3554 12 1 1.6136 2.9691 -3.7597 13 6 2.2429 2.0167 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9923 1.3061 2.4723 16 7 2.3100 2.2035 3.5857 17 6 1.3996 3.0401 4.1537 18 8 0.1977 3.0260 3.9960 19 6 2.1845 3.9845 5.0071 20 1 2.5558 4.8103 4.4001 21 6 1.5834 4.5123 6.2881 22 6 2.6550 5.4004 6.9470 23 6 3.9603 4.6476 7.1802 24 6 4.4743 3.9698 5.8954 25 6 3.3669 3.0538 5.4219 26 1 3.0555 2.3847 6.2240 27 6 3.5442 2.2818 4.1528 28 8 4.5773 1.8200 3.7182 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1385 36 1 5.7177 2.5743 -4.0829 37 1 2.6228 0.4188 2.5299 38 1 0.9443 1.0116 2.5302 39 1 0.6942 5.1027 6.0673 40 1 1.3278 3.6841 6.9490 41 1 2.8507 6.2569 6.3017 42 1 2.2775 5.7596 7.9043 43 1 4.7140 5.3475 7.5410 44 1 3.7975 3.8816 7.9383 45 1 5.3748 3.3921 6.1041 46 1 4.6812 4.7287 5.1409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121545870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:10 Heat of formation + Delta-G solvation = -97.213933 kcal Electronic energy + Delta-G solvation = -28567.195240 eV Core-core repulsion = 24650.178045 eV Total energy + Delta-G solvation = -3917.017195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.25203 -39.24533 -38.52409 -37.81619 -35.75067 -35.31498 -32.81086 -31.99783 -31.29532 -30.39024 -28.77749 -26.95192 -25.36608 -23.52064 -23.03061 -22.08164 -22.06714 -20.56716 -19.50971 -18.53430 -17.43710 -17.11248 -16.91737 -16.72469 -15.84666 -15.59161 -15.19646 -14.97442 -14.71916 -14.65324 -14.18072 -13.87440 -13.81027 -13.56586 -13.54184 -13.31781 -13.05640 -12.64785 -12.63957 -12.33764 -12.10060 -11.78429 -11.71893 -11.59300 -11.46119 -11.43334 -11.08036 -10.99677 -10.84492 -10.76498 -10.51993 -10.21534 -10.17264 -10.03927 -9.87913 -9.53327 -8.94908 -8.58593 -7.80046 -6.07931 -4.06973 1.55151 2.30140 2.59859 3.17528 3.28863 3.34792 3.36700 3.57899 3.76787 4.07917 4.12346 4.39585 4.53788 4.69818 4.72906 4.82033 4.85941 4.94052 4.95951 5.07949 5.09997 5.12028 5.25028 5.31345 5.39446 5.41656 5.49449 5.50352 5.66770 5.69484 5.70255 5.75724 5.78536 5.89828 5.94220 6.02542 6.11571 6.37262 6.66414 6.70561 6.91008 7.27006 7.28150 7.60144 7.75664 8.14299 8.46148 8.82175 8.96636 9.51618 11.05441 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.003696 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.782737 B = 7574.861743 C = 8195.518276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.529 4.529 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.497 3.503 14 O -0.532 6.532 15 C 0.080 3.920 16 N -0.575 5.575 17 C 0.552 3.448 18 O -0.475 6.475 19 C -0.132 4.132 20 H 0.127 0.873 21 C -0.095 4.095 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.099 4.099 25 C -0.128 4.128 26 H 0.122 0.878 27 C 0.542 3.458 28 O -0.456 6.456 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.035 0.965 36 H 0.265 0.735 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 0.116 21.844 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.320 5.320 4 C 0.097 3.903 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.282 3.718 14 O -0.409 6.409 15 C -0.045 4.045 16 N -0.320 5.320 17 C 0.341 3.659 18 O -0.345 6.345 19 C -0.153 4.153 20 H 0.144 0.856 21 C -0.133 4.133 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.137 4.137 25 C -0.149 4.149 26 H 0.140 0.860 27 C 0.331 3.669 28 O -0.324 6.324 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.462 0.482 21.319 22.942 hybrid contribution -0.439 0.338 -1.009 1.151 sum -8.901 0.820 20.310 22.190 Atomic orbital electron populations 1.22249 0.96467 1.01803 1.02444 1.21516 0.93590 0.83611 1.03387 1.47910 1.63774 1.13465 1.06808 1.19671 0.97471 0.93317 0.79800 1.21324 0.95248 1.33037 1.07169 0.90678 1.24853 0.94993 0.95781 0.97325 1.69903 1.15103 1.44886 1.23547 0.86861 0.81468 0.81612 0.79806 1.19952 1.20999 1.19071 1.20409 0.78876 0.87326 0.85231 1.90672 1.45263 1.17995 1.86926 1.21699 1.04386 0.93294 0.85100 1.47543 1.12627 1.39678 1.32193 1.20520 0.85977 0.80274 0.79105 1.90730 1.12514 1.69894 1.61387 1.22181 0.96129 0.98527 0.98449 0.85565 1.21176 0.98565 1.00176 0.93383 1.21600 0.94535 0.98512 1.01155 1.21609 0.97092 0.99834 0.97054 1.21293 0.96638 0.97708 0.98061 1.22183 0.98796 0.97468 0.96432 0.86027 1.20612 0.81830 0.78981 0.85502 1.90800 1.28288 1.45711 1.67630 0.92038 0.91712 0.92902 0.89267 0.91454 0.95046 0.94674 0.92555 0.86700 0.86548 0.90150 0.90848 0.91518 0.91208 0.91120 0.91772 0.89982 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.10 1.60 5.93 -4.04 -0.02 1.57 16 3 N -0.59 -12.32 2.46 -175.05 -0.43 -12.75 16 4 C 0.22 5.43 4.23 -5.19 -0.02 5.41 16 5 C -0.53 -15.54 9.94 -34.44 -0.34 -15.88 16 6 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 7 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 8 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 9 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 10 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 13 C 0.50 10.52 7.74 -10.98 -0.09 10.43 16 14 O -0.53 -13.51 16.01 5.56 0.09 -13.43 16 15 C 0.08 1.26 4.77 -5.19 -0.02 1.24 16 16 N -0.58 -8.73 2.16 -116.81 -0.25 -8.98 16 17 C 0.55 7.77 7.74 -10.96 -0.08 7.69 16 18 O -0.47 -7.71 17.68 5.60 0.10 -7.61 16 19 C -0.13 -1.38 2.37 -91.67 -0.22 -1.60 16 20 H 0.13 1.41 7.81 -51.92 -0.41 1.00 16 21 C -0.10 -0.71 5.84 -27.21 -0.16 -0.86 16 22 C -0.12 -0.72 5.81 -26.49 -0.15 -0.87 16 23 C -0.12 -0.70 5.81 -26.43 -0.15 -0.86 16 24 C -0.10 -0.84 5.85 -27.01 -0.16 -0.99 16 25 C -0.13 -1.27 2.41 -91.50 -0.22 -1.49 16 26 H 0.12 0.90 7.88 -51.93 -0.41 0.50 16 27 C 0.54 8.05 7.71 -10.94 -0.08 7.96 16 28 O -0.46 -8.52 17.83 5.61 0.10 -8.42 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.65 7.22 -51.93 -0.38 0.28 16 32 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 33 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 34 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 35 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 36 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 37 H 0.12 1.61 7.34 -51.93 -0.38 1.23 16 38 H 0.12 1.54 6.94 -51.93 -0.36 1.18 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.47 7.95 -51.93 -0.41 0.06 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -37.91 373.20 -7.32 -45.23 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.20 Total: -1.62 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: -1.45 Total: 12.02 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.09 Total: -49.06 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: 0.29 Total: -29.45 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.91 -7.32 -45.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121545870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.985 kcal (2) G-P(sol) polarization free energy of solvation -37.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds