Wall clock time and date at job start Fri Apr 10 2020 14:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46926 * 2 1 4 4 C 1.46493 * 120.00235 * 90.00466 * 3 2 1 5 5 C 1.50706 * 109.47128 * 269.99530 * 4 3 2 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47483 * 269.99808 * 9 7 5 11 11 H 1.48499 * 109.47134 * 30.00322 * 9 7 5 12 12 H 1.48507 * 109.46904 * 150.00145 * 9 7 5 13 13 C 1.34783 * 119.99658 * 269.99594 * 3 2 1 14 14 O 1.21284 * 119.99626 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00310 * 0.02562 * 13 3 2 16 16 N 1.46492 * 109.47170 * 179.97438 * 15 13 3 17 17 C 1.36050 * 123.28443 * 269.70234 * 16 15 13 18 18 O 1.21221 * 126.99857 * 347.26851 * 17 16 15 19 19 C 1.49720 * 105.93645 * 167.15438 * 17 16 15 20 20 H 1.09002 * 110.76395 * 275.29492 * 19 17 16 21 21 C 1.51310 * 119.28604 * 146.18601 * 19 17 16 22 22 C 1.54196 * 106.18544 * 181.83946 * 21 19 17 23 23 C 1.52473 * 111.87684 * 57.50550 * 22 21 19 24 24 C 1.53990 * 112.11570 * 306.95732 * 23 22 21 25 25 C 1.51043 * 106.71216 * 56.34855 * 24 23 22 26 26 H 1.09001 * 110.08221 * 53.56471 * 25 24 23 27 27 C 1.36058 * 123.28778 * 90.00064 * 16 15 13 28 28 O 1.21230 * 127.00558 * 347.30806 * 27 16 15 29 29 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46792 * 300.00225 * 1 2 3 31 31 H 1.09000 * 109.47265 * 59.99910 * 1 2 3 32 32 H 1.08998 * 109.46792 * 239.99775 * 2 1 3 33 33 H 1.08997 * 109.46846 * 119.99788 * 2 1 3 34 34 H 1.09001 * 109.47786 * 149.99803 * 4 3 2 35 35 H 1.09006 * 109.47401 * 29.99388 * 4 3 2 36 36 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 37 37 H 1.08999 * 109.46989 * 299.99618 * 15 13 3 38 38 H 1.09004 * 109.47105 * 59.99792 * 15 13 3 39 39 H 1.08997 * 110.10773 * 301.00944 * 21 19 17 40 40 H 1.09006 * 110.10697 * 62.67653 * 21 19 17 41 41 H 1.09000 * 109.00055 * 178.12475 * 22 21 19 42 42 H 1.09002 * 108.99728 * 296.89082 * 22 21 19 43 43 H 1.08995 * 108.95306 * 67.63416 * 23 22 21 44 44 H 1.08993 * 108.95257 * 186.37083 * 23 22 21 45 45 H 1.09002 * 110.00310 * 297.05167 * 24 23 22 46 46 H 1.09000 * 110.00243 * 175.64634 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2686 5 6 1.0068 2.7823 1.7037 6 1 0.1159 2.7254 1.0957 7 6 0.9951 3.5049 2.8779 8 7 2.0800 3.5746 3.6180 9 14 -0.5614 4.3861 3.4167 10 1 -0.5688 5.7628 2.8601 11 1 -1.7477 3.6444 2.9189 12 1 -0.6049 4.4515 4.8997 13 6 2.2430 2.0165 -1.1673 14 8 2.6477 3.1598 -1.1673 15 6 1.9914 1.3063 -2.4724 16 7 2.3083 2.2039 -3.5858 17 6 1.3960 3.0362 -4.1567 18 8 0.1938 3.0164 -4.0030 19 6 2.1811 3.9828 -5.0108 20 1 2.5517 4.8201 -4.4196 21 6 1.5765 4.4902 -6.3017 22 6 2.6452 5.3919 -6.9516 23 6 3.9525 4.6437 -7.1880 24 6 4.4697 3.9616 -5.9079 25 6 3.3636 3.0554 -5.4214 26 1 3.0488 2.3860 -6.2219 27 6 3.5421 2.2824 -4.1538 28 8 4.5757 1.8203 -3.7204 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.0645 2.7985 1.1384 35 1 2.5507 1.3451 2.0284 36 1 2.8883 3.1172 3.3379 37 1 2.6213 0.4186 -2.5302 38 1 0.9433 1.0124 -2.5299 39 1 1.3416 3.6536 -6.9598 40 1 0.6760 5.0677 -6.0922 41 1 2.2679 5.7576 -7.9066 42 1 2.8365 6.2430 -6.2979 43 1 3.7925 3.8847 -7.9536 44 1 4.7051 5.3488 -7.5406 45 1 4.6967 4.7124 -5.1510 46 1 5.3608 3.3752 -6.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121546002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:14 Heat of formation + Delta-G solvation = -104.916548 kcal Electronic energy + Delta-G solvation = -28637.808346 eV Core-core repulsion = 24720.457141 eV Total energy + Delta-G solvation = -3917.351206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.28026 -39.23471 -38.54788 -37.84490 -35.77246 -35.31781 -33.10662 -32.00236 -31.31056 -30.03594 -28.53278 -26.26368 -25.37535 -23.59535 -22.82357 -22.48137 -22.08933 -20.59712 -19.64385 -18.67181 -17.46772 -17.20198 -16.89933 -16.74971 -15.81825 -15.58887 -15.06719 -14.99253 -14.72167 -14.53069 -14.13463 -13.83527 -13.70905 -13.58381 -13.42926 -13.17202 -13.08612 -12.94022 -12.65175 -12.06474 -12.01558 -11.73074 -11.63998 -11.61576 -11.44611 -11.34532 -11.08954 -10.94004 -10.87279 -10.66464 -10.46499 -10.22257 -10.11412 -10.07832 -9.89486 -9.13854 -8.94437 -8.37818 -7.71363 -6.38055 -4.09877 1.52439 2.28014 2.57451 3.17335 3.44244 3.47619 3.57547 3.62387 3.78730 4.06738 4.09857 4.51501 4.53737 4.68210 4.70259 4.80692 4.86975 4.92485 4.93868 5.04859 5.07691 5.14815 5.32423 5.36454 5.37317 5.41146 5.48127 5.64364 5.67367 5.68898 5.72127 5.73327 5.76457 5.87535 6.00275 6.04232 6.22434 6.68098 6.70138 6.77390 7.09323 7.25491 7.33579 7.72812 8.03023 8.18098 8.43054 8.75823 8.88398 9.59389 10.99157 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016080 B = 0.003631 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.859710 B = 7709.627123 C = 8159.012541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.109 3.891 3 N -0.589 5.589 4 C 0.237 3.763 5 C -0.603 4.603 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 1.073 2.927 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.283 1.283 13 C 0.495 3.505 14 O -0.533 6.533 15 C 0.080 3.920 16 N -0.575 5.575 17 C 0.550 3.450 18 O -0.468 6.468 19 C -0.131 4.131 20 H 0.128 0.872 21 C -0.097 4.097 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.098 4.098 25 C -0.129 4.129 26 H 0.121 0.879 27 C 0.546 3.454 28 O -0.467 6.467 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.033 0.967 35 H 0.023 0.977 36 H 0.267 0.733 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.171 -3.996 -22.944 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 N -0.321 5.321 4 C 0.118 3.882 5 C -0.642 4.642 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.546 5.546 9 Si 0.901 3.099 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.209 1.209 13 C 0.280 3.720 14 O -0.409 6.409 15 C -0.045 4.045 16 N -0.320 5.320 17 C 0.340 3.660 18 O -0.337 6.337 19 C -0.152 4.152 20 H 0.146 0.854 21 C -0.135 4.135 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.136 4.136 25 C -0.151 4.151 26 H 0.139 0.861 27 C 0.335 3.665 28 O -0.336 6.336 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.658 -2.721 -21.374 21.556 hybrid contribution 0.508 -1.173 -0.892 1.559 sum 1.166 -3.894 -22.265 22.634 Atomic orbital electron populations 1.22242 0.95868 1.01162 1.03674 1.21464 0.94940 0.83247 1.01875 1.48045 1.63595 1.13333 1.07141 1.19375 0.97998 0.92211 0.78653 1.22271 0.97719 1.34732 1.09466 0.92804 1.25792 1.03327 0.95975 0.93365 1.70773 1.02095 1.42109 1.39656 0.83491 0.74078 0.76196 0.76148 1.21401 1.21480 1.20916 1.20380 0.79217 0.87209 0.85200 1.90675 1.45940 1.17414 1.86918 1.21706 1.04542 0.93040 0.85216 1.47533 1.12530 1.39851 1.32081 1.20562 0.86035 0.80362 0.79086 1.90750 1.12493 1.69559 1.60925 1.22231 0.95960 0.98558 0.98412 0.85434 1.21311 0.98678 1.00226 0.93236 1.21653 0.94490 0.98472 1.01257 1.21587 0.97134 0.99852 0.96984 1.21207 0.96542 0.97816 0.98034 1.22068 0.98945 0.97636 0.96403 0.86115 1.20573 0.81783 0.78719 0.85429 1.90752 1.28404 1.46407 1.68026 0.92474 0.90320 0.93172 0.91979 0.90377 0.94950 0.95920 0.92228 0.87002 0.86442 0.90805 0.90012 0.91169 0.91450 0.91723 0.91149 0.90502 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.11 1.76 5.98 -4.04 -0.02 1.74 16 3 N -0.59 -12.77 2.46 -175.06 -0.43 -13.20 16 4 C 0.24 6.26 4.52 -5.19 -0.02 6.24 16 5 C -0.60 -17.38 8.92 -34.44 -0.31 -17.69 16 6 H 0.05 1.57 7.42 -52.48 -0.39 1.18 16 7 C 0.02 0.57 5.46 -17.82 -0.10 0.48 16 8 N -0.91 -28.06 13.65 55.43 0.76 -27.30 16 9 Si 1.07 26.12 29.90 -169.99 -5.08 21.03 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.50 10.77 7.74 -10.98 -0.09 10.69 16 14 O -0.53 -13.90 16.01 5.55 0.09 -13.81 16 15 C 0.08 1.29 4.77 -5.20 -0.02 1.26 16 16 N -0.57 -8.86 2.16 -116.77 -0.25 -9.11 16 17 C 0.55 8.20 7.73 -10.88 -0.08 8.12 16 18 O -0.47 -8.24 17.67 5.61 0.10 -8.14 16 19 C -0.13 -1.42 2.44 -91.61 -0.22 -1.64 16 20 H 0.13 1.47 7.81 -51.93 -0.41 1.06 16 21 C -0.10 -0.76 5.86 -26.96 -0.16 -0.91 16 22 C -0.12 -0.74 5.80 -26.38 -0.15 -0.90 16 23 C -0.12 -0.68 5.81 -26.48 -0.15 -0.84 16 24 C -0.10 -0.79 5.83 -27.20 -0.16 -0.95 16 25 C -0.13 -1.26 2.36 -91.83 -0.22 -1.48 16 26 H 0.12 0.89 7.81 -51.93 -0.41 0.48 16 27 C 0.55 7.83 7.73 -10.96 -0.08 7.75 16 28 O -0.47 -8.09 17.83 5.60 0.10 -7.99 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.49 7.26 -51.93 -0.38 1.11 16 31 H 0.05 0.78 7.22 -51.93 -0.37 0.41 16 32 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 33 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 34 H 0.03 0.96 7.29 -51.93 -0.38 0.58 16 35 H 0.02 0.60 7.76 -51.93 -0.40 0.19 16 36 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 37 H 0.11 1.50 7.34 -51.93 -0.38 1.12 16 38 H 0.12 1.72 6.93 -51.93 -0.36 1.36 16 39 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -37.31 373.39 -7.60 -44.91 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -7.09 Total: -1.57 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -1.41 Total: 9.57 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.07 Total: -49.62 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: 0.29 Total: -29.95 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -5.08 Total: 21.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.31 -7.60 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121546002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.006 kcal (2) G-P(sol) polarization free energy of solvation -37.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds