Wall clock time and date at job start Fri Apr 10 2020 14:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47320 * 2 1 4 4 C 1.37097 * 120.00227 * 97.77050 * 3 2 1 5 5 H 1.08000 * 119.99954 * 163.90982 * 4 3 2 6 6 C 1.38949 * 119.99782 * 343.90840 * 4 3 2 7 7 N 1.31409 * 120.00485 * 350.87677 * 6 4 3 8 8 Si 1.86804 * 119.99849 * 170.87587 * 6 4 3 9 9 H 1.48493 * 109.47067 * 89.99942 * 8 6 4 10 10 H 1.48497 * 109.47111 * 210.00239 * 8 6 4 11 11 H 1.48502 * 109.47005 * 330.00020 * 8 6 4 12 12 C 1.34780 * 119.99521 * 277.77096 * 3 2 1 13 13 O 1.21286 * 120.00282 * 3.86080 * 12 3 2 14 14 C 1.50700 * 119.99449 * 183.86379 * 12 3 2 15 15 H 1.09005 * 109.47216 * 311.20974 * 14 12 3 16 16 C 1.52993 * 109.47579 * 71.21476 * 14 12 3 17 17 N 1.46505 * 109.46876 * 191.21491 * 14 12 3 18 18 C 1.34337 * 122.84090 * 299.70764 * 17 14 12 19 19 O 1.21228 * 125.94775 * 357.04048 * 18 17 14 20 20 C 1.50693 * 108.08680 * 176.91161 * 18 17 14 21 21 H 1.09002 * 105.81917 * 256.30636 * 20 18 17 22 22 C 1.49436 * 113.19587 * 140.29662 * 20 18 17 23 23 C 1.52519 * 113.29528 * 267.14563 * 22 20 18 24 24 C 1.53459 * 107.59426 * 305.24109 * 23 22 20 25 25 C 1.51407 * 108.63251 * 67.96851 * 24 23 22 26 26 C 1.51217 * 105.06512 * 8.15145 * 20 18 17 27 27 H 1.09005 * 109.81382 * 233.91621 * 26 20 18 28 28 C 1.34044 * 122.84154 * 119.99471 * 17 14 12 29 29 O 1.21219 * 125.59958 * 356.79206 * 28 17 14 30 30 H 1.09001 * 109.46870 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46997 * 300.00016 * 1 2 3 32 32 H 1.08994 * 109.47069 * 60.00174 * 1 2 3 33 33 H 1.08997 * 109.46921 * 239.99329 * 2 1 3 34 34 H 1.09004 * 109.47147 * 119.99742 * 2 1 3 35 35 H 0.97002 * 120.00620 * 179.97438 * 7 6 4 36 36 H 1.09003 * 109.47295 * 60.92991 * 16 14 12 37 37 H 1.08996 * 109.47391 * 180.93200 * 16 14 12 38 38 H 1.09004 * 109.46984 * 300.93230 * 16 14 12 39 39 H 1.08994 * 108.71804 * 28.13469 * 22 20 18 40 40 H 1.09007 * 108.71562 * 146.28488 * 22 20 18 41 41 H 1.08993 * 109.83624 * 64.76703 * 23 22 20 42 42 H 1.08999 * 109.82971 * 185.72276 * 23 22 20 43 43 H 1.09004 * 109.74656 * 188.17225 * 24 23 22 44 44 H 1.08992 * 109.75054 * 308.86237 * 24 23 22 45 45 H 1.09000 * 109.77919 * 180.91772 * 25 24 23 46 46 H 1.09004 * 107.32639 * 62.97370 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3982 1.9740 1.1764 5 1 2.9922 2.8758 1.1594 6 6 2.0191 1.4145 2.3904 7 7 1.1525 0.4269 2.4167 8 14 2.7411 2.0661 3.9852 9 1 1.8840 3.1614 4.5055 10 1 2.8042 0.9695 4.9845 11 1 4.1094 2.5855 3.7333 12 6 2.0942 2.0691 -1.1566 13 8 1.6929 1.5699 -2.1865 14 6 2.6777 3.4584 -1.1699 15 1 2.2235 4.0509 -0.3756 16 6 4.1891 3.3791 -0.9464 17 7 2.4079 4.0889 -2.4646 18 6 2.8509 3.5831 -3.6276 19 8 3.5514 2.6021 -3.7562 20 6 2.3224 4.4458 -4.7444 21 1 1.5024 3.8839 -5.1915 22 6 3.3187 4.6724 -5.8349 23 6 4.1392 5.9444 -5.6476 24 6 3.1557 7.1121 -5.4925 25 6 2.4198 6.9536 -4.1789 26 6 1.6865 5.6330 -4.0568 27 1 0.6573 5.7492 -4.3966 28 6 1.7030 5.2223 -2.5884 29 8 1.1671 5.8226 -1.6818 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 0.8881 0.0360 3.2642 36 1 4.6454 2.8006 -1.7497 37 1 4.6087 4.3850 -0.9395 38 1 4.3901 2.8951 0.0094 39 1 3.9975 3.8204 -5.8711 40 1 2.7885 4.7370 -6.7852 41 1 4.7555 5.8585 -4.7528 42 1 4.7725 6.1076 -6.5196 43 1 3.7006 8.0562 -5.5014 44 1 2.4333 7.0961 -6.3085 45 1 1.7033 7.7660 -4.0570 46 1 3.1605 7.0191 -3.3819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154989215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:44 Heat of formation + Delta-G solvation = -108.491011 kcal Electronic energy + Delta-G solvation = -29593.529233 eV Core-core repulsion = 25676.023027 eV Total energy + Delta-G solvation = -3917.506206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.41209 -40.65503 -39.66778 -38.53355 -37.15115 -36.62603 -34.30588 -33.47147 -32.31595 -31.90041 -30.60129 -26.96476 -26.13509 -25.86517 -24.53147 -23.38738 -23.26347 -21.38415 -20.82833 -20.07702 -19.13553 -18.21896 -17.79603 -17.53716 -17.18586 -16.52760 -16.18579 -16.10377 -15.79361 -15.62402 -15.56601 -15.25202 -14.85029 -14.50077 -14.44368 -14.19271 -13.94476 -13.82119 -13.68665 -13.50438 -13.26507 -13.15475 -12.92991 -12.90654 -12.77822 -12.58991 -12.28608 -12.18829 -12.06813 -11.75230 -11.69817 -11.43506 -11.20095 -11.13857 -11.05548 -10.89800 -10.77886 -10.19511 -9.76636 -8.25271 -5.96400 0.54361 1.35559 1.44368 1.48010 1.58372 1.74849 1.91158 2.27249 2.82447 2.98867 3.10151 3.13621 3.39540 3.67525 3.92007 3.98691 4.04614 4.06229 4.13440 4.26545 4.28282 4.37212 4.49785 4.51881 4.56324 4.65651 4.76940 4.78843 4.82376 4.87773 4.98330 4.99543 5.03725 5.05830 5.14493 5.25707 5.34404 5.35514 5.40143 5.43087 5.54063 5.71850 5.80731 5.89068 6.35955 6.42491 6.80584 7.05883 7.48841 7.89355 8.69312 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.004181 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.723941 B = 6695.006199 C = 7202.343635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.137 3.863 3 N -0.442 5.442 4 C -0.359 4.359 5 H 0.112 0.888 6 C -0.003 4.003 7 N -0.884 5.884 8 Si 0.992 3.008 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.258 1.258 12 C 0.435 3.565 13 O -0.623 6.623 14 C 0.125 3.875 15 H 0.109 0.891 16 C -0.147 4.147 17 N -0.566 5.566 18 C 0.530 3.470 19 O -0.498 6.498 20 C -0.107 4.107 21 H 0.118 0.882 22 C -0.097 4.097 23 C -0.121 4.121 24 C -0.108 4.108 25 C -0.101 4.101 26 C -0.085 4.085 27 H 0.146 0.854 28 C 0.518 3.482 29 O -0.518 6.518 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.009 0.991 33 H 0.019 0.981 34 H 0.102 0.898 35 H 0.272 0.728 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.045 0.955 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 13.262 -12.799 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.014 3.986 3 N -0.160 5.160 4 C -0.486 4.486 5 H 0.130 0.870 6 C -0.206 4.206 7 N -0.522 5.522 8 Si 0.815 3.185 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.182 1.182 12 C 0.223 3.777 13 O -0.512 6.512 14 C 0.019 3.981 15 H 0.126 0.874 16 C -0.205 4.205 17 N -0.308 5.308 18 C 0.321 3.679 19 O -0.370 6.370 20 C -0.129 4.129 21 H 0.136 0.864 22 C -0.135 4.135 23 C -0.159 4.159 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.106 4.106 27 H 0.163 0.837 28 C 0.308 3.692 29 O -0.392 6.392 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.037 0.963 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.179 12.600 -12.671 18.352 hybrid contribution -0.139 -0.675 1.515 1.665 sum 4.040 11.925 -11.156 16.822 Atomic orbital electron populations 1.21754 0.96231 1.00325 0.99509 1.21278 0.94915 0.82909 0.99463 1.43923 1.54613 1.11518 1.05921 1.20185 1.33500 1.11871 0.83059 0.87046 1.26146 0.95460 0.96626 1.02328 1.70163 1.29611 1.24917 1.27518 0.84944 0.79027 0.77752 0.76789 1.20207 1.20380 1.18227 1.20506 0.84598 0.88413 0.84222 1.90496 1.55421 1.71443 1.33806 1.20907 0.99046 0.92846 0.85258 0.87363 1.21993 0.91036 1.03569 1.03872 1.46954 1.49459 1.25194 1.09167 1.21355 0.77631 0.83994 0.84910 1.90668 1.35685 1.25522 1.85099 1.20648 1.02001 0.95286 0.94921 0.86391 1.20589 0.96717 0.99640 0.96528 1.21613 0.97776 0.94054 1.02447 1.21317 0.98189 0.98727 0.96255 1.20847 0.99671 0.93266 1.00124 1.21438 1.05125 0.96581 0.87490 0.83659 1.22110 0.74747 0.78410 0.93893 1.90713 1.44107 1.56763 1.47653 0.92524 0.91504 0.97226 0.96299 0.87992 0.91783 0.92414 0.89758 0.89389 0.91962 0.87484 0.93644 0.88888 0.89466 0.89251 0.88689 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 9.61 71.98 0.69 -5.27 16 2 C 0.14 7.17 5.19 86.38 0.45 7.62 16 3 N -0.44 -23.48 2.65 -635.54 -1.68 -25.16 16 4 C -0.36 -18.18 8.45 84.04 0.71 -17.47 16 5 H 0.11 5.24 4.96 -2.91 -0.01 5.23 16 6 C 0.00 -0.17 5.20 84.93 0.44 0.27 16 7 N -0.88 -44.74 8.09 21.66 0.18 -44.57 16 8 Si 0.99 38.75 29.56 68.60 2.03 40.78 16 9 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 10 H -0.28 -10.72 7.11 99.48 0.71 -10.02 16 11 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 12 C 0.43 22.73 6.68 87.66 0.59 23.31 16 13 O -0.62 -35.49 13.87 15.09 0.21 -35.28 16 14 C 0.13 5.48 2.27 44.24 0.10 5.58 16 15 H 0.11 4.90 6.67 -2.38 -0.02 4.89 16 16 C -0.15 -5.59 8.85 71.98 0.64 -4.96 16 17 N -0.57 -21.72 2.36 -736.54 -1.74 -23.46 16 18 C 0.53 19.31 6.16 87.72 0.54 19.85 16 19 O -0.50 -21.86 14.39 15.27 0.22 -21.64 16 20 C -0.11 -2.52 2.62 -13.26 -0.03 -2.56 16 21 H 0.12 2.58 8.06 -2.39 -0.02 2.56 16 22 C -0.10 -1.67 5.36 29.30 0.16 -1.51 16 23 C -0.12 -1.67 6.07 30.59 0.19 -1.48 16 24 C -0.11 -1.13 5.92 30.23 0.18 -0.95 16 25 C -0.10 -1.62 5.27 29.60 0.16 -1.46 16 26 C -0.09 -1.82 3.30 -12.02 -0.04 -1.86 16 27 H 0.15 2.36 8.14 -2.38 -0.02 2.34 16 28 C 0.52 17.37 7.03 88.35 0.62 17.99 16 29 O -0.52 -20.33 17.26 -2.84 -0.05 -20.38 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.07 3.51 6.39 -2.38 -0.02 3.50 16 32 H 0.01 0.45 7.85 -2.39 -0.02 0.44 16 33 H 0.02 1.00 7.73 -2.39 -0.02 0.98 16 34 H 0.10 5.42 5.75 -2.38 -0.01 5.41 16 35 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 36 H 0.06 2.35 6.55 -2.39 -0.02 2.34 16 37 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.09 3.41 6.02 -2.39 -0.01 3.40 16 39 H 0.06 1.35 7.44 -2.39 -0.02 1.33 16 40 H 0.11 1.19 8.14 -2.38 -0.02 1.18 16 41 H 0.04 0.80 8.12 -2.39 -0.02 0.78 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.09 0.63 8.10 -2.39 -0.02 0.62 16 45 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.05 0.91 7.68 -2.39 -0.02 0.90 16 Total: -1.00 -71.14 354.08 5.53 -65.60 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.99 Total: 27.02 kcal Atomic # 6 Polarization: 31.71 SS G_CDS: 5.38 Total: 37.09 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -3.25 Total: -93.19 kcal Atomic # 8 Polarization: -77.68 SS G_CDS: 0.38 Total: -77.30 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -71.14 5.53 -65.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154989215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.889 kcal (2) G-P(sol) polarization free energy of solvation -71.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds