Wall clock time and date at job start Fri Apr 10 2020 14:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46746 * 227.08835 * 3 2 1 5 5 C 1.36932 * 119.99861 * 95.78821 * 4 3 2 6 6 H 1.08003 * 120.00004 * 163.90548 * 5 4 3 7 7 C 1.38813 * 120.00188 * 343.89607 * 5 4 3 8 8 N 1.31610 * 119.99960 * 336.65323 * 7 5 4 9 9 Si 1.86804 * 120.00039 * 156.65449 * 7 5 4 10 10 H 1.48497 * 109.46718 * 265.78345 * 9 7 5 11 11 H 1.48502 * 109.46968 * 25.77763 * 9 7 5 12 12 H 1.48497 * 109.47212 * 145.78098 * 9 7 5 13 13 C 1.46501 * 119.99810 * 275.78471 * 4 3 2 14 14 C 1.50701 * 109.46868 * 270.00081 * 13 4 3 15 15 O 1.21281 * 120.00558 * 0.02562 * 14 13 4 16 16 N 1.34775 * 119.99951 * 180.02562 * 14 13 4 17 17 C 1.46928 * 120.62992 * 359.71948 * 16 14 13 18 18 C 1.52756 * 109.01033 * 233.58613 * 17 16 14 19 19 C 1.53050 * 109.38223 * 305.58650 * 18 17 16 20 20 C 1.53035 * 109.53409 * 61.23967 * 19 18 17 21 21 H 1.09004 * 109.50037 * 58.58906 * 20 19 18 22 22 C 1.50701 * 109.52180 * 178.66676 * 20 19 18 23 23 O 1.20826 * 120.00032 * 359.85512 * 22 20 19 24 24 O 1.34236 * 120.00050 * 179.85314 * 22 20 19 25 25 C 1.45203 * 116.99918 * 179.97438 * 24 22 20 26 26 C 1.53002 * 109.46902 * 180.02562 * 25 24 22 27 27 C 1.46933 * 120.63416 * 180.02562 * 16 14 13 28 28 H 4.40637 * 5.51389 * 179.97438 * 4 1 2 29 29 H 1.08993 * 109.47076 * 107.08666 * 3 2 1 30 30 H 1.09003 * 109.47229 * 347.08802 * 3 2 1 31 31 H 0.97005 * 120.00395 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.47444 * 30.00190 * 13 4 3 33 33 H 1.09000 * 109.47046 * 150.00635 * 13 4 3 34 34 H 1.09005 * 109.58661 * 353.41884 * 17 16 14 35 35 H 1.09003 * 109.58598 * 113.84206 * 17 16 14 36 36 H 1.09005 * 109.56679 * 185.55575 * 18 17 16 37 37 H 1.08997 * 109.39167 * 65.50957 * 18 17 16 38 38 H 1.09000 * 109.46174 * 301.21955 * 19 18 17 39 39 H 1.09002 * 109.45913 * 181.25982 * 19 18 17 40 40 H 1.08995 * 109.47266 * 300.00162 * 25 24 22 41 41 H 1.09002 * 109.46597 * 60.00318 * 25 24 22 42 42 H 1.08995 * 109.47195 * 300.00086 * 26 25 24 43 43 H 1.09004 * 109.46870 * 60.00415 * 26 25 24 44 44 H 1.08997 * 109.46724 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.58426 * 246.15907 * 27 16 14 46 46 H 1.09003 * 109.58117 * 6.43931 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 0.9413 1.0116 5 6 3.4750 0.4897 2.2585 6 1 4.0691 1.1098 2.9136 7 6 3.0572 -0.7649 2.6807 8 7 1.9992 -1.3247 2.1335 9 14 3.9965 -1.6586 4.0255 10 1 4.9941 -2.5703 3.4103 11 1 4.6944 -0.6680 4.8839 12 1 3.0476 -2.4478 4.8514 13 6 3.2568 2.3651 0.6892 14 6 4.6318 2.6380 0.1361 15 8 5.4304 1.7323 0.0219 16 7 4.9742 3.8885 -0.2318 17 6 4.0158 4.9949 -0.1053 18 6 3.8899 5.7009 -1.4541 19 6 5.2790 6.1243 -1.9374 20 6 6.1575 4.8844 -2.1192 21 1 5.6910 4.2102 -2.8376 22 6 7.5147 5.2989 -2.6263 23 8 7.7548 6.4663 -2.8250 24 8 8.4570 4.3711 -2.8573 25 6 9.7407 4.8426 -3.3454 26 6 10.6779 3.6505 -3.5489 27 6 6.3108 4.1702 -0.7733 28 1 -1.0501 -0.0001 -0.0003 29 1 3.0092 0.3027 -0.9822 30 1 3.0099 -1.0009 0.2296 31 1 1.7074 -2.2017 2.4282 32 1 2.5062 2.6356 -0.0534 33 1 3.1045 2.9566 1.5920 34 1 3.0431 4.6035 0.1928 35 1 4.3719 5.7031 0.6429 36 1 3.2577 6.5824 -1.3472 37 1 3.4447 5.0195 -2.1790 38 1 5.7336 6.7865 -1.2006 39 1 5.1884 6.6480 -2.8891 40 1 9.6007 5.3603 -4.2943 41 1 10.1764 5.5279 -2.6183 42 1 10.8180 3.1323 -2.6002 43 1 10.2420 2.9655 -4.2762 44 1 11.6417 4.0044 -3.9149 45 1 6.8583 4.8095 -0.0808 46 1 6.8528 3.2348 -0.9133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281314428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:27 Heat of formation + Delta-G solvation = -37.092314 kcal Electronic energy + Delta-G solvation = -27730.835376 eV Core-core repulsion = 23816.425250 eV Total energy + Delta-G solvation = -3914.410126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.94762 -39.58229 -37.44813 -36.60881 -35.57656 -33.02691 -32.12881 -31.56692 -31.50216 -30.99306 -27.56445 -25.98456 -25.40131 -24.60262 -23.22008 -22.05250 -21.62193 -20.24887 -18.79051 -17.81856 -17.51106 -16.95053 -16.84670 -16.36403 -16.21127 -15.55623 -15.02555 -14.77288 -14.61176 -14.21833 -13.90157 -13.73496 -13.55362 -13.48133 -13.24381 -12.99609 -12.77267 -12.64417 -12.43516 -12.17040 -11.87433 -11.66410 -11.48668 -11.32156 -11.15235 -11.07748 -10.92534 -10.79316 -10.75141 -10.69690 -10.57939 -10.22353 -9.97436 -9.34506 -8.96818 -8.74959 -8.41427 -8.39580 -7.04098 -5.79301 -3.17545 1.96815 2.41905 3.24704 3.29934 3.43086 3.49858 3.51219 4.13676 4.35964 4.36486 4.46295 4.56241 4.60808 4.66819 4.70672 4.82667 4.94274 4.98364 5.05785 5.17524 5.33596 5.40011 5.41635 5.50849 5.52252 5.58887 5.65270 5.71940 5.72988 5.74159 5.82286 5.82940 6.00465 6.06216 6.11415 6.20848 6.23968 6.71688 6.72943 7.26882 7.40496 7.54218 7.72906 7.79545 8.24171 8.83833 9.08528 9.16618 9.74736 10.18079 11.25132 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.003215 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.908274 B = 8707.676867 C = 9695.857681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.097 4.097 3 C 0.269 3.731 4 N -0.562 5.562 5 C -0.260 4.260 6 H 0.073 0.927 7 C 0.007 3.993 8 N -0.887 5.887 9 Si 0.900 3.100 10 H -0.287 1.287 11 H -0.280 1.280 12 H -0.293 1.293 13 C 0.136 3.864 14 C 0.483 3.517 15 O -0.516 6.516 16 N -0.625 5.625 17 C 0.107 3.893 18 C -0.135 4.135 19 C -0.102 4.102 20 C -0.095 4.095 21 H 0.113 0.887 22 C 0.472 3.528 23 O -0.510 6.510 24 O -0.353 6.353 25 C 0.061 3.939 26 C -0.154 4.154 27 C 0.123 3.877 28 H 0.191 0.809 29 H 0.037 0.963 30 H 0.099 0.901 31 H 0.255 0.745 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.162 15.058 -10.935 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.099 4.099 3 C 0.144 3.856 4 N -0.279 5.279 5 C -0.389 4.389 6 H 0.091 0.909 7 C -0.192 4.192 8 N -0.529 5.529 9 Si 0.730 3.270 10 H -0.214 1.214 11 H -0.205 1.205 12 H -0.220 1.220 13 C 0.004 3.996 14 C 0.270 3.730 15 O -0.388 6.388 16 N -0.363 5.363 17 C -0.016 4.016 18 C -0.173 4.173 19 C -0.139 4.139 20 C -0.116 4.116 21 H 0.131 0.869 22 C 0.315 3.685 23 O -0.397 6.397 24 O -0.270 6.270 25 C -0.012 4.012 26 C -0.211 4.211 27 C -0.001 4.001 28 H 0.208 0.792 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.638 14.654 -10.957 20.234 hybrid contribution 0.373 -0.288 0.667 0.817 sum 9.012 14.366 -10.290 19.836 Atomic orbital electron populations 1.24192 0.95301 1.05543 1.06734 1.24287 0.95229 0.95810 0.94604 1.17736 0.82561 0.96245 0.89025 1.43625 1.73473 1.00067 1.10760 1.19125 1.27167 1.00901 0.91672 0.90884 1.24818 0.96451 0.99069 0.98876 1.70156 1.21166 1.16826 1.44792 0.86310 0.79559 0.79977 0.81139 1.21366 1.20490 1.21985 1.20699 0.90798 0.88621 0.99531 1.23349 0.92602 0.80448 0.76606 1.90643 1.52385 1.43411 1.52410 1.48505 1.13203 1.08958 1.65668 1.21633 0.93944 0.89227 0.96810 1.21886 0.96518 1.01076 0.97838 1.21421 0.94576 0.95144 1.02778 1.21522 0.89358 1.00483 1.00194 0.86923 1.23653 0.86736 0.84049 0.74089 1.90648 1.80921 1.19624 1.48549 1.86574 1.23396 1.40386 1.76602 1.23040 0.80884 0.97847 0.99463 1.21817 0.98016 0.97723 1.03560 1.21276 0.86527 1.01269 0.91035 0.79155 0.94554 0.88328 0.93494 0.91198 0.90145 0.88940 0.91592 0.90012 0.91021 0.90831 0.90867 0.91332 0.91233 0.91188 0.91339 0.90293 0.91841 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.63 19.25 29.55 0.57 -6.06 16 2 C -0.10 -2.32 11.64 -37.12 -0.43 -2.75 16 3 C 0.27 6.55 5.41 -6.83 -0.04 6.51 16 4 N -0.56 -13.80 1.98 -177.95 -0.35 -14.15 16 5 C -0.26 -7.08 9.65 -15.06 -0.15 -7.23 16 6 H 0.07 1.98 7.93 -52.48 -0.42 1.57 16 7 C 0.01 0.19 4.83 -17.43 -0.08 0.11 16 8 N -0.89 -25.21 9.55 55.49 0.53 -24.68 16 9 Si 0.90 22.03 29.61 -169.99 -5.03 17.00 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 C 0.14 2.61 4.50 -5.19 -0.02 2.59 16 14 C 0.48 9.02 7.77 -10.99 -0.09 8.94 16 15 O -0.52 -11.88 15.84 5.56 0.09 -11.79 16 16 N -0.63 -8.77 2.98 -173.05 -0.52 -9.28 16 17 C 0.11 1.10 6.31 -3.93 -0.02 1.08 16 18 C -0.13 -1.14 6.06 -26.83 -0.16 -1.30 16 19 C -0.10 -0.95 4.47 -26.69 -0.12 -1.07 16 20 C -0.10 -1.05 2.78 -91.68 -0.25 -1.30 16 21 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 22 C 0.47 5.68 7.26 36.01 0.26 5.94 16 23 O -0.51 -6.98 15.73 -18.75 -0.29 -7.28 16 24 O -0.35 -4.15 10.15 -39.27 -0.40 -4.55 16 25 C 0.06 0.56 6.19 37.16 0.23 0.79 16 26 C -0.15 -1.10 10.29 37.16 0.38 -0.72 16 27 C 0.12 1.59 5.64 -3.73 -0.02 1.57 16 28 H 0.19 3.50 7.80 -54.09 -0.42 3.08 16 29 H 0.04 0.81 8.11 -51.93 -0.42 0.38 16 30 H 0.10 2.66 6.40 -51.93 -0.33 2.33 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 32 H 0.07 1.20 7.61 -51.93 -0.40 0.80 16 33 H 0.08 1.46 7.85 -51.93 -0.41 1.06 16 34 H 0.09 0.92 5.94 -51.93 -0.31 0.61 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 39 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 40 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 41 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 1.57 7.00 -51.93 -0.36 1.20 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -33.77 383.77 -7.41 -41.18 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.27 Total: 0.68 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 0.05 Total: 7.09 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.34 Total: -48.11 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.61 Total: -23.62 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.77 -7.41 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281314428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.090 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds