Wall clock time and date at job start Fri Apr 10 2020 14:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46746 * 227.08835 * 3 2 1 5 5 C 1.36932 * 119.99861 * 95.78821 * 4 3 2 6 6 H 1.08003 * 120.00004 * 163.90548 * 5 4 3 7 7 C 1.38813 * 120.00188 * 343.89607 * 5 4 3 8 8 N 1.31610 * 119.99960 * 336.65323 * 7 5 4 9 9 Si 1.86804 * 120.00039 * 156.65449 * 7 5 4 10 10 H 1.48497 * 109.46718 * 265.78345 * 9 7 5 11 11 H 1.48502 * 109.46968 * 25.77763 * 9 7 5 12 12 H 1.48497 * 109.47212 * 145.78098 * 9 7 5 13 13 C 1.46501 * 119.99810 * 275.78471 * 4 3 2 14 14 C 1.50701 * 109.46868 * 270.00081 * 13 4 3 15 15 O 1.21281 * 120.00558 * 0.02562 * 14 13 4 16 16 N 1.34775 * 119.99951 * 180.02562 * 14 13 4 17 17 C 1.46928 * 120.62992 * 359.71948 * 16 14 13 18 18 C 1.52756 * 109.01033 * 233.58613 * 17 16 14 19 19 C 1.53050 * 109.38223 * 305.58650 * 18 17 16 20 20 C 1.53035 * 109.53409 * 61.23967 * 19 18 17 21 21 H 1.09004 * 109.50037 * 58.58906 * 20 19 18 22 22 C 1.50701 * 109.52180 * 178.66676 * 20 19 18 23 23 O 1.20826 * 120.00032 * 359.85512 * 22 20 19 24 24 O 1.34236 * 120.00050 * 179.85314 * 22 20 19 25 25 C 1.45203 * 116.99918 * 179.97438 * 24 22 20 26 26 C 1.53002 * 109.46902 * 180.02562 * 25 24 22 27 27 C 1.46933 * 120.63416 * 180.02562 * 16 14 13 28 28 H 4.40637 * 5.51389 * 179.97438 * 4 1 2 29 29 H 1.08993 * 109.47076 * 107.08666 * 3 2 1 30 30 H 1.09003 * 109.47229 * 347.08802 * 3 2 1 31 31 H 0.97005 * 120.00395 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.47444 * 30.00190 * 13 4 3 33 33 H 1.09000 * 109.47046 * 150.00635 * 13 4 3 34 34 H 1.09005 * 109.58661 * 353.41884 * 17 16 14 35 35 H 1.09003 * 109.58598 * 113.84206 * 17 16 14 36 36 H 1.09005 * 109.56679 * 185.55575 * 18 17 16 37 37 H 1.08997 * 109.39167 * 65.50957 * 18 17 16 38 38 H 1.09000 * 109.46174 * 301.21955 * 19 18 17 39 39 H 1.09002 * 109.45913 * 181.25982 * 19 18 17 40 40 H 1.08995 * 109.47266 * 300.00162 * 25 24 22 41 41 H 1.09002 * 109.46597 * 60.00318 * 25 24 22 42 42 H 1.08995 * 109.47195 * 300.00086 * 26 25 24 43 43 H 1.09004 * 109.46870 * 60.00415 * 26 25 24 44 44 H 1.08997 * 109.46724 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.58426 * 246.15907 * 27 16 14 46 46 H 1.09003 * 109.58117 * 6.43931 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 0.9413 1.0116 5 6 3.4750 0.4897 2.2585 6 1 4.0691 1.1098 2.9136 7 6 3.0572 -0.7649 2.6807 8 7 1.9992 -1.3247 2.1335 9 14 3.9965 -1.6586 4.0255 10 1 4.9941 -2.5703 3.4103 11 1 4.6944 -0.6680 4.8839 12 1 3.0476 -2.4478 4.8514 13 6 3.2568 2.3651 0.6892 14 6 4.6318 2.6380 0.1361 15 8 5.4304 1.7323 0.0219 16 7 4.9742 3.8885 -0.2318 17 6 4.0158 4.9949 -0.1053 18 6 3.8899 5.7009 -1.4541 19 6 5.2790 6.1243 -1.9374 20 6 6.1575 4.8844 -2.1192 21 1 5.6910 4.2102 -2.8376 22 6 7.5147 5.2989 -2.6263 23 8 7.7548 6.4663 -2.8250 24 8 8.4570 4.3711 -2.8573 25 6 9.7407 4.8426 -3.3454 26 6 10.6779 3.6505 -3.5489 27 6 6.3108 4.1702 -0.7733 28 1 -1.0501 -0.0001 -0.0003 29 1 3.0092 0.3027 -0.9822 30 1 3.0099 -1.0009 0.2296 31 1 1.7074 -2.2017 2.4282 32 1 2.5062 2.6356 -0.0534 33 1 3.1045 2.9566 1.5920 34 1 3.0431 4.6035 0.1928 35 1 4.3719 5.7031 0.6429 36 1 3.2577 6.5824 -1.3472 37 1 3.4447 5.0195 -2.1790 38 1 5.7336 6.7865 -1.2006 39 1 5.1884 6.6480 -2.8891 40 1 9.6007 5.3603 -4.2943 41 1 10.1764 5.5279 -2.6183 42 1 10.8180 3.1323 -2.6002 43 1 10.2420 2.9655 -4.2762 44 1 11.6417 4.0044 -3.9149 45 1 6.8583 4.8095 -0.0808 46 1 6.8528 3.2348 -0.9133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281314428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:26 Heat of formation + Delta-G solvation = -56.047439 kcal Electronic energy + Delta-G solvation = -27731.657332 eV Core-core repulsion = 23816.425250 eV Total energy + Delta-G solvation = -3915.232082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.91669 -40.83695 -38.62546 -37.70680 -37.28418 -34.16564 -33.49461 -33.06776 -32.89457 -32.07054 -29.15879 -27.90982 -26.33011 -25.83058 -23.99667 -23.61951 -22.65199 -21.24346 -19.99317 -19.37308 -18.80169 -18.25102 -18.05189 -17.76650 -17.29654 -16.98963 -16.45664 -16.21138 -15.71269 -15.42951 -15.17254 -15.14029 -14.76735 -14.66502 -14.53974 -14.04743 -13.98583 -13.60545 -13.58316 -13.37188 -13.17588 -12.96174 -12.78729 -12.62647 -12.52478 -12.47437 -12.22048 -12.02629 -11.96189 -11.89072 -11.65394 -11.55779 -11.52005 -11.02594 -10.79187 -10.57196 -10.28386 -9.59516 -8.96735 -7.85739 -5.23776 0.99934 1.44822 1.50318 1.56216 1.57400 1.84888 2.05905 2.37669 2.53693 2.60471 3.27359 3.49946 3.58374 3.70503 3.78163 3.97534 3.98105 4.03469 4.03853 4.13569 4.14333 4.17851 4.31177 4.52750 4.56265 4.61870 4.65831 4.75286 4.77584 4.84819 4.88080 4.92511 4.93710 5.08412 5.10331 5.13614 5.29926 5.37679 5.41573 5.61345 5.63624 5.68633 6.23018 6.50220 6.61504 7.06934 7.36566 7.40960 7.79822 8.19356 9.16600 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.003215 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.908274 B = 8707.676867 C = 9695.857681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.139 4.139 3 C 0.277 3.723 4 N -0.580 5.580 5 C -0.264 4.264 6 H 0.067 0.933 7 C -0.040 4.040 8 N -0.907 5.907 9 Si 0.953 3.047 10 H -0.294 1.294 11 H -0.273 1.273 12 H -0.293 1.293 13 C 0.136 3.864 14 C 0.487 3.513 15 O -0.570 6.570 16 N -0.614 5.614 17 C 0.097 3.903 18 C -0.126 4.126 19 C -0.097 4.097 20 C -0.088 4.088 21 H 0.114 0.886 22 C 0.475 3.525 23 O -0.526 6.526 24 O -0.366 6.366 25 C 0.053 3.947 26 C -0.150 4.150 27 C 0.126 3.874 28 H 0.227 0.773 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.248 0.752 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.604 17.216 -11.374 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.142 4.142 3 C 0.152 3.848 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.085 0.915 7 C -0.236 4.236 8 N -0.551 5.551 9 Si 0.783 3.217 10 H -0.222 1.222 11 H -0.198 1.198 12 H -0.220 1.220 13 C 0.005 3.995 14 C 0.274 3.726 15 O -0.448 6.448 16 N -0.350 5.350 17 C -0.024 4.024 18 C -0.164 4.164 19 C -0.135 4.135 20 C -0.108 4.108 21 H 0.132 0.868 22 C 0.318 3.682 23 O -0.415 6.415 24 O -0.283 6.283 25 C -0.020 4.020 26 C -0.207 4.207 27 C 0.002 3.998 28 H 0.244 0.756 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.122 0.878 45 H 0.092 0.908 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.085 16.897 -11.414 21.935 hybrid contribution 0.593 -0.836 0.733 1.260 sum 8.679 16.061 -10.681 21.151 Atomic orbital electron populations 1.25024 0.96209 1.03497 1.04844 1.24404 0.95719 0.97678 0.96363 1.17466 0.83264 0.94611 0.89501 1.43727 1.73998 1.02170 1.09930 1.19297 1.26332 1.01140 0.92552 0.91513 1.25401 0.97303 0.99813 1.01104 1.70278 1.22199 1.16570 1.46076 0.85475 0.78234 0.78826 0.79210 1.22193 1.19781 1.21979 1.20889 0.91703 0.86089 1.00780 1.22939 0.91829 0.81348 0.76484 1.90628 1.53589 1.45493 1.55040 1.48379 1.14239 1.08456 1.63942 1.21996 0.93312 0.88331 0.98775 1.21861 0.96297 1.01936 0.96290 1.21432 0.94625 0.94130 1.03288 1.21491 0.89377 1.01225 0.98743 0.86800 1.23770 0.86985 0.83761 0.73652 1.90636 1.81262 1.20191 1.49454 1.86581 1.24389 1.40799 1.76536 1.23306 0.80098 0.98857 0.99712 1.21844 0.98671 0.96956 1.03222 1.21244 0.85646 1.00424 0.92511 0.75604 0.93239 0.91986 0.94241 0.88714 0.88955 0.88260 0.89695 0.87053 0.91176 0.90684 0.90163 0.90722 0.90996 0.91903 0.91550 0.87818 0.90777 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -11.81 19.25 74.32 1.43 -10.38 16 2 C -0.14 -6.63 11.64 31.13 0.36 -6.27 16 3 C 0.28 13.71 5.41 84.57 0.46 14.17 16 4 N -0.58 -28.69 1.98 -716.91 -1.42 -30.11 16 5 C -0.26 -14.54 9.65 84.03 0.81 -13.73 16 6 H 0.07 3.67 7.93 -2.91 -0.02 3.65 16 7 C -0.04 -2.22 4.83 84.86 0.41 -1.81 16 8 N -0.91 -52.39 9.55 21.65 0.21 -52.18 16 9 Si 0.95 46.09 29.61 68.60 2.03 48.12 16 10 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 13 C 0.14 5.11 4.50 85.63 0.39 5.50 16 14 C 0.49 18.04 7.77 87.66 0.68 18.73 16 15 O -0.57 -26.95 15.84 -3.03 -0.05 -27.00 16 16 N -0.61 -16.43 2.98 -819.81 -2.44 -18.87 16 17 C 0.10 1.72 6.31 86.22 0.54 2.26 16 18 C -0.13 -1.69 6.06 30.53 0.19 -1.51 16 19 C -0.10 -1.56 4.47 30.62 0.14 -1.42 16 20 C -0.09 -1.82 2.78 -11.48 -0.03 -1.86 16 21 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 22 C 0.47 11.03 7.26 71.24 0.52 11.54 16 23 O -0.53 -13.77 15.73 21.96 0.35 -13.43 16 24 O -0.37 -8.53 10.15 -51.48 -0.52 -9.06 16 25 C 0.05 0.94 6.19 71.98 0.45 1.38 16 26 C -0.15 -2.01 10.29 71.98 0.74 -1.27 16 27 C 0.13 3.18 5.64 86.35 0.49 3.66 16 28 H 0.23 7.56 7.80 -4.41 -0.03 7.53 16 29 H 0.05 2.24 8.11 -2.39 -0.02 2.22 16 30 H 0.06 3.49 6.40 -2.39 -0.02 3.48 16 31 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 32 H 0.10 3.07 7.61 -2.39 -0.02 3.05 16 33 H 0.09 3.23 7.85 -2.39 -0.02 3.21 16 34 H 0.10 1.66 5.94 -2.38 -0.01 1.64 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 39 H 0.08 1.24 8.07 -2.39 -0.02 1.22 16 40 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 41 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 46 H 0.08 2.39 7.00 -2.39 -0.02 2.37 16 Total: -1.00 -74.18 383.77 6.67 -67.51 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.96 Total: 16.01 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 7.56 Total: 19.00 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -3.66 Total: -101.16 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.22 Total: -49.48 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -74.18 6.67 -67.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281314428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.465 kcal (2) G-P(sol) polarization free energy of solvation -74.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds