Wall clock time and date at job start Fri Apr 10 2020 14:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47403 * 2 1 4 4 C 1.37095 * 120.00064 * 263.73440 * 3 2 1 5 5 H 1.08007 * 119.99677 * 189.46682 * 4 3 2 6 6 C 1.38946 * 120.00558 * 9.46805 * 4 3 2 7 7 N 1.31416 * 119.99537 * 19.57817 * 6 4 3 8 8 Si 1.86796 * 120.00357 * 199.58775 * 6 4 3 9 9 H 1.48498 * 109.47376 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47473 * 119.99696 * 8 6 4 11 11 H 1.48503 * 109.47110 * 239.99582 * 8 6 4 12 12 C 1.34780 * 119.99840 * 83.72889 * 3 2 1 13 13 O 1.21291 * 119.99986 * 356.39279 * 12 3 2 14 14 C 1.50698 * 119.99778 * 176.66031 * 12 3 2 15 15 H 1.08997 * 109.47052 * 52.72517 * 14 12 3 16 16 C 1.53004 * 109.47401 * 292.72071 * 14 12 3 17 17 N 1.46505 * 109.46912 * 172.72487 * 14 12 3 18 18 C 1.36056 * 123.28570 * 59.70616 * 17 14 12 19 19 O 1.21226 * 127.00971 * 347.30755 * 18 17 14 20 20 C 1.49663 * 105.91393 * 167.21018 * 18 17 14 21 21 H 1.08992 * 110.32433 * 275.56713 * 20 18 17 22 22 C 1.51036 * 119.59196 * 146.76940 * 20 18 17 23 23 C 1.53986 * 106.71312 * 182.45024 * 22 20 18 24 24 C 1.52474 * 112.11614 * 56.35972 * 23 22 20 25 25 C 1.54190 * 111.87147 * 306.94641 * 24 23 22 26 26 C 1.51316 * 106.18514 * 57.50674 * 25 24 23 27 27 H 1.09000 * 109.93780 * 53.21805 * 26 25 24 28 28 C 1.36050 * 123.28175 * 239.99967 * 17 14 12 29 29 O 1.21229 * 126.99948 * 347.28880 * 28 17 14 30 30 H 1.08993 * 109.47010 * 293.01642 * 1 2 3 31 31 H 1.09004 * 109.47024 * 53.01741 * 1 2 3 32 32 H 1.09002 * 109.46993 * 173.01380 * 1 2 3 33 33 H 1.09005 * 109.46651 * 239.99924 * 2 1 3 34 34 H 1.09003 * 109.47162 * 120.00337 * 2 1 3 35 35 H 0.97008 * 119.99709 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.46404 * 65.10001 * 16 14 12 37 37 H 1.08995 * 109.47174 * 185.09916 * 16 14 12 38 38 H 1.08996 * 109.47013 * 305.09948 * 16 14 12 39 39 H 1.09004 * 109.99508 * 63.15197 * 22 20 18 40 40 H 1.08996 * 110.08422 * 301.80031 * 22 20 18 41 41 H 1.08999 * 108.95772 * 295.67445 * 23 22 20 42 42 H 1.09004 * 108.94960 * 177.03918 * 23 22 20 43 43 H 1.09001 * 108.99952 * 186.32960 * 24 23 22 44 44 H 1.08995 * 109.00243 * 67.56177 * 24 23 22 45 45 H 1.09006 * 110.10077 * 298.34275 * 25 24 23 46 46 H 1.08995 * 110.20007 * 176.73038 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3691 1.9842 -1.1802 5 1 2.8703 2.9409 -1.1696 6 6 2.0798 1.3649 -2.3898 7 7 1.1596 0.4283 -2.4448 8 14 2.9989 1.8632 -3.9378 9 1 3.9764 2.9321 -3.6106 10 1 3.7177 0.6858 -4.4875 11 1 2.0327 2.3684 -4.9461 12 6 2.1229 2.0590 1.1603 13 8 1.7513 1.5490 2.1961 14 6 2.6958 3.4528 1.1697 15 1 2.1660 4.0683 0.4427 16 6 4.1806 3.3964 0.8046 17 7 2.5431 4.0345 2.5056 18 6 3.0888 3.4869 3.6252 19 8 3.5712 2.3803 3.7356 20 6 2.9733 4.5313 4.6910 21 1 3.8111 5.2260 4.6326 22 6 2.7537 4.1122 6.1253 23 6 2.6178 5.4062 6.9489 24 6 1.5031 6.3053 6.4256 25 6 1.6548 6.5900 4.9179 26 6 1.6643 5.2409 4.2327 27 1 0.7884 4.6656 4.5325 28 6 1.8371 5.1718 2.7484 29 8 1.4306 5.9672 1.9288 30 1 -0.3633 0.4018 0.9458 31 1 -0.3633 0.6182 -0.8209 32 1 -0.3633 -1.0201 -0.1250 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.9578 -0.0045 -3.2893 36 1 4.2891 3.0486 -0.2227 37 1 4.6160 4.3911 0.8994 38 1 4.6942 2.7094 1.4771 39 1 3.6066 3.5329 6.4790 40 1 1.8419 3.5206 6.2070 41 1 3.5607 5.9517 6.9094 42 1 2.4050 5.1452 7.9856 43 1 1.5245 7.2499 6.9691 44 1 0.5434 5.8188 6.6001 45 1 2.5920 7.1133 4.7279 46 1 0.8147 7.1857 4.5609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299695709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:55 Heat of formation + Delta-G solvation = -101.461186 kcal Electronic energy + Delta-G solvation = -29395.939424 eV Core-core repulsion = 25478.738054 eV Total energy + Delta-G solvation = -3917.201370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.24217 -40.63103 -39.54497 -38.64704 -37.12917 -36.59807 -34.23423 -33.46981 -31.91942 -31.71428 -30.32610 -26.97543 -26.26011 -25.81470 -24.56353 -22.96896 -22.85958 -21.19795 -21.08311 -20.26683 -19.10969 -18.48764 -17.81952 -17.52049 -16.72629 -16.56306 -16.15440 -16.07537 -15.85393 -15.70122 -15.43057 -14.93560 -14.73136 -14.68029 -14.38333 -14.26740 -13.96256 -13.88054 -13.75512 -13.29259 -13.15334 -13.13263 -12.90157 -12.69237 -12.56830 -12.43046 -12.22057 -12.12887 -12.04893 -12.02093 -11.70898 -11.64424 -11.35948 -11.18717 -10.88190 -10.82805 -10.66259 -10.11232 -9.79344 -8.29530 -5.87832 0.55768 1.34775 1.42107 1.49459 1.60897 1.66650 1.94520 2.28366 2.78189 2.90714 3.10124 3.29926 3.36744 3.83781 3.93976 4.03897 4.07194 4.09639 4.15042 4.19231 4.34033 4.34370 4.45167 4.48240 4.50541 4.68488 4.78155 4.82011 4.84406 4.87098 4.88223 5.00939 5.05002 5.13236 5.18654 5.23822 5.33838 5.38410 5.38830 5.43201 5.55472 5.69861 5.79059 5.83688 6.34193 6.43377 6.82563 7.08832 7.53448 7.94766 8.68816 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.021180 B = 0.003951 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.660669 B = 7085.432460 C = 7505.850725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.137 3.863 3 N -0.443 5.443 4 C -0.364 4.364 5 H 0.116 0.884 6 C -0.001 4.001 7 N -0.878 5.878 8 Si 0.986 3.014 9 H -0.256 1.256 10 H -0.278 1.278 11 H -0.282 1.282 12 C 0.431 3.569 13 O -0.619 6.619 14 C 0.128 3.872 15 H 0.106 0.894 16 C -0.147 4.147 17 N -0.582 5.582 18 C 0.534 3.466 19 O -0.487 6.487 20 C -0.116 4.116 21 H 0.146 0.854 22 C -0.097 4.097 23 C -0.111 4.111 24 C -0.115 4.115 25 C -0.092 4.092 26 C -0.120 4.120 27 H 0.121 0.879 28 C 0.538 3.462 29 O -0.507 6.507 30 H 0.011 0.989 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.021 0.979 35 H 0.272 0.728 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.083 12.312 13.551 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.014 3.986 3 N -0.161 5.161 4 C -0.490 4.490 5 H 0.134 0.866 6 C -0.204 4.204 7 N -0.516 5.516 8 Si 0.810 3.190 9 H -0.179 1.179 10 H -0.204 1.204 11 H -0.208 1.208 12 C 0.219 3.781 13 O -0.507 6.507 14 C 0.022 3.978 15 H 0.124 0.876 16 C -0.205 4.205 17 N -0.327 5.327 18 C 0.324 3.676 19 O -0.357 6.357 20 C -0.137 4.137 21 H 0.163 0.837 22 C -0.135 4.135 23 C -0.148 4.148 24 C -0.153 4.153 25 C -0.130 4.130 26 C -0.141 4.141 27 H 0.138 0.862 28 C 0.330 3.670 29 O -0.380 6.380 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.861 11.706 13.486 18.271 hybrid contribution -0.087 -0.679 -1.502 1.651 sum 3.774 11.027 11.984 16.717 Atomic orbital electron populations 1.21666 0.96152 1.00897 0.98668 1.21255 0.94896 0.83078 0.99412 1.43956 1.54963 1.11578 1.05620 1.20237 1.38681 1.07139 0.82959 0.86639 1.26064 0.95842 0.96661 1.01857 1.70252 1.27368 1.26335 1.27623 0.84978 0.78353 0.78526 0.77181 1.17924 1.20363 1.20782 1.20507 0.84896 0.88630 0.84088 1.90527 1.55948 1.70933 1.33246 1.20846 0.99787 0.93203 0.83914 0.87584 1.22030 0.91450 1.03103 1.03926 1.48044 1.50096 1.25282 1.09247 1.21339 0.75170 0.86862 0.84196 1.90707 1.42177 1.20462 1.82324 1.22190 0.99681 0.95857 0.95953 0.83659 1.21248 1.02860 0.99335 0.90070 1.21568 1.00089 0.93763 0.99391 1.21636 0.99275 1.00990 0.93363 1.21385 1.04279 0.91911 0.95385 1.22230 0.99791 1.03364 0.88741 0.86162 1.21323 0.74305 0.78240 0.93151 1.90699 1.48857 1.42345 1.56139 0.97000 0.92088 0.92448 0.88510 0.96038 0.91811 0.88844 0.89649 0.93197 0.90292 0.91943 0.90210 0.89811 0.89038 0.91746 0.89527 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 9.53 71.98 0.69 -5.01 16 2 C 0.14 7.09 5.22 86.38 0.45 7.54 16 3 N -0.44 -23.28 2.64 -635.53 -1.68 -24.95 16 4 C -0.36 -18.18 8.41 84.04 0.71 -17.47 16 5 H 0.12 5.36 4.79 -2.91 -0.01 5.35 16 6 C 0.00 -0.07 5.04 84.92 0.43 0.36 16 7 N -0.88 -44.24 8.47 21.66 0.18 -44.06 16 8 Si 0.99 38.34 29.60 68.60 2.03 40.37 16 9 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 10 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 11 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 12 C 0.43 22.26 6.70 87.66 0.59 22.85 16 13 O -0.62 -35.07 13.81 17.54 0.24 -34.82 16 14 C 0.13 5.50 2.34 44.24 0.10 5.60 16 15 H 0.11 4.67 7.01 -2.39 -0.02 4.65 16 16 C -0.15 -5.45 8.76 71.98 0.63 -4.82 16 17 N -0.58 -21.84 2.42 -736.07 -1.78 -23.62 16 18 C 0.53 19.09 6.48 87.13 0.56 19.65 16 19 O -0.49 -21.62 15.33 17.74 0.27 -21.35 16 20 C -0.12 -2.62 2.39 -11.54 -0.03 -2.65 16 21 H 0.15 2.47 7.79 -2.39 -0.02 2.45 16 22 C -0.10 -1.73 5.83 30.29 0.18 -1.56 16 23 C -0.11 -1.16 5.80 30.75 0.18 -0.98 16 24 C -0.12 -1.19 5.80 30.82 0.18 -1.01 16 25 C -0.09 -1.36 5.86 30.45 0.18 -1.18 16 26 C -0.12 -2.77 2.39 -11.47 -0.03 -2.79 16 27 H 0.12 2.84 7.87 -2.39 -0.02 2.82 16 28 C 0.54 17.76 7.73 87.11 0.67 18.44 16 29 O -0.51 -19.16 17.52 -2.87 -0.05 -19.21 16 30 H 0.01 0.56 8.10 -2.39 -0.02 0.54 16 31 H 0.06 3.20 6.70 -2.39 -0.02 3.19 16 32 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.10 5.11 5.71 -2.38 -0.01 5.10 16 34 H 0.02 1.14 7.67 -2.39 -0.02 1.12 16 35 H 0.27 12.88 8.31 -92.70 -0.77 12.11 16 36 H 0.09 3.52 5.66 -2.39 -0.01 3.51 16 37 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.05 1.97 7.39 -2.39 -0.02 1.95 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.27 7.96 -2.39 -0.02 1.25 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.09 1.09 7.89 -2.38 -0.02 1.07 16 46 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -69.98 357.39 5.70 -64.28 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.99 Total: 26.39 kcal Atomic # 6 Polarization: 31.48 SS G_CDS: 5.49 Total: 36.97 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -3.28 Total: -92.63 kcal Atomic # 8 Polarization: -75.84 SS G_CDS: 0.46 Total: -75.38 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -69.98 5.70 -64.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299695709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.179 kcal (2) G-P(sol) polarization free energy of solvation -69.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds