Wall clock time and date at job start Fri Apr 10 2020 14:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47515 * 2 1 4 4 C 1.35892 * 117.00474 * 179.97438 * 3 2 1 5 5 C 1.38750 * 120.05409 * 0.02562 * 4 3 2 6 6 C 1.38130 * 119.94511 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05377 * 0.24916 * 6 5 4 8 8 C 1.38246 * 120.10972 * 359.49556 * 7 6 5 9 9 C 1.50696 * 119.97043 * 180.25540 * 8 7 6 10 10 N 1.46903 * 109.47198 * 270.25086 * 9 8 7 11 11 C 1.46898 * 111.00250 * 66.04435 * 10 9 8 12 12 C 1.52997 * 109.46983 * 53.73624 * 11 10 9 13 13 O 1.42906 * 109.46969 * 67.60282 * 12 11 10 14 14 C 1.46899 * 111.00540 * 190.00444 * 10 9 8 15 15 C 1.50694 * 109.47575 * 171.62696 * 14 10 9 16 16 O 1.21299 * 120.00062 * 353.36564 * 15 14 10 17 17 N 1.34775 * 120.00143 * 173.36557 * 15 14 10 18 18 C 1.37102 * 120.00024 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99675 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00129 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00138 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99991 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47029 * 89.99498 * 22 20 18 24 24 H 1.48497 * 109.47235 * 210.00028 * 22 20 18 25 25 H 1.48505 * 109.46809 * 329.99795 * 22 20 18 26 26 C 1.38162 * 120.05663 * 0.50652 * 8 7 6 27 27 H 1.08996 * 109.46685 * 300.00210 * 1 2 3 28 28 H 1.09000 * 109.47104 * 59.99782 * 1 2 3 29 29 H 1.08999 * 109.46841 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47340 * 239.99634 * 2 1 3 31 31 H 1.09009 * 109.47391 * 119.99710 * 2 1 3 32 32 H 1.08003 * 120.02981 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.97412 * 179.97438 * 6 5 4 34 34 H 1.07993 * 119.94409 * 179.74020 * 7 6 5 35 35 H 1.08998 * 109.47264 * 30.24804 * 9 8 7 36 36 H 1.09003 * 109.47431 * 150.25550 * 9 8 7 37 37 H 1.08996 * 109.47447 * 173.74066 * 11 10 9 38 38 H 1.09006 * 109.47118 * 293.74314 * 11 10 9 39 39 H 1.09006 * 109.47605 * 187.60192 * 12 11 10 40 40 H 1.09007 * 109.47293 * 307.60283 * 12 11 10 41 41 H 0.96704 * 113.99947 * 180.02562 * 13 12 11 42 42 H 1.09009 * 109.46523 * 291.62386 * 14 10 9 43 43 H 1.08998 * 109.47115 * 51.61838 * 14 10 9 44 44 H 0.96996 * 119.99890 * 359.97438 * 17 15 14 45 45 H 0.96998 * 119.99981 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.03022 * 179.77488 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6094 0.0005 7 6 6.0963 1.8878 0.0058 8 6 5.2552 2.9850 0.0005 9 6 5.8332 4.3766 0.0004 10 7 6.0211 4.8290 1.3854 11 6 7.0444 4.0255 2.0674 12 6 8.3315 4.0303 1.2402 13 8 8.8943 5.3439 1.2426 14 6 6.3568 6.2583 1.4315 15 6 6.3397 6.7325 2.8618 16 8 5.9580 5.9905 3.7423 17 7 6.7484 7.9810 3.1628 18 6 6.7333 8.4122 4.4642 19 1 6.3935 7.7515 5.2481 20 6 7.1552 9.6992 4.7746 21 7 7.1402 10.1127 6.0219 22 14 7.7436 10.8417 3.4189 23 1 6.5919 11.6143 2.8881 24 1 8.7579 11.7781 3.9662 25 1 8.3488 10.0407 2.3246 26 6 3.8851 2.8066 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 3.7886 -0.5728 0.0005 33 1 6.2281 -0.2461 0.0009 34 1 7.1669 2.0293 0.0100 35 1 6.7945 4.3708 -0.5134 36 1 5.1507 5.0536 -0.5134 37 1 7.2433 4.4499 3.0515 38 1 6.6879 3.0014 2.1786 39 1 9.0445 3.3288 1.6734 40 1 8.1063 3.7334 0.2159 41 1 9.7143 5.4214 0.7358 42 1 7.3502 6.4120 1.0097 43 1 5.6252 6.8222 0.8529 44 1 7.0539 8.5742 2.4589 45 1 7.4351 11.0110 6.2386 46 1 3.2284 3.6641 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452048974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:00 Heat of formation + Delta-G solvation = -75.223168 kcal Electronic energy + Delta-G solvation = -27408.024293 eV Core-core repulsion = 23491.960689 eV Total energy + Delta-G solvation = -3916.063604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39170 -39.23405 -37.89927 -37.07311 -35.35351 -33.75938 -32.23747 -31.64327 -31.50156 -29.84662 -29.19432 -27.33869 -25.23599 -23.81490 -23.69488 -22.61232 -21.61987 -20.16363 -19.13107 -18.08584 -17.91106 -17.54169 -16.52987 -16.32043 -16.20225 -15.94927 -15.56155 -15.03671 -14.76885 -14.27360 -13.97151 -13.83507 -13.61443 -13.51892 -13.18346 -13.13576 -12.92572 -12.81971 -12.39539 -12.12631 -12.09848 -11.90312 -11.84446 -11.60762 -11.51895 -11.40482 -11.03916 -10.97356 -10.91848 -10.74266 -10.48778 -9.86106 -9.80455 -9.38219 -8.92599 -8.39593 -8.27077 -8.02958 -7.73530 -6.19058 -3.69005 1.22568 1.38210 3.01113 3.12599 3.15749 3.22768 3.60008 3.95711 4.18790 4.21610 4.38272 4.58643 4.61967 4.70787 4.81068 4.87664 4.91027 4.94035 5.08898 5.14190 5.22825 5.27842 5.35996 5.38787 5.41007 5.48000 5.48305 5.62011 5.67943 5.75860 5.83470 5.95997 6.00283 6.15126 6.22276 6.31054 6.33343 6.51726 6.53407 6.68793 7.28056 7.31765 7.38834 7.67048 7.72720 8.29302 8.75364 9.09546 9.57741 10.01900 10.94623 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018044 B = 0.002794 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.402539 B =10019.293960 C =10924.658646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.316 6.316 4 C 0.128 3.872 5 C -0.213 4.213 6 C -0.082 4.082 7 C -0.155 4.155 8 C -0.029 4.029 9 C 0.083 3.917 10 N -0.501 5.501 11 C 0.049 3.951 12 C 0.031 3.969 13 O -0.556 6.556 14 C 0.030 3.970 15 C 0.465 3.535 16 O -0.564 6.564 17 N -0.594 5.594 18 C -0.298 4.298 19 H 0.118 0.882 20 C 0.038 3.962 21 N -0.887 5.887 22 Si 0.879 3.121 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.269 1.269 26 C -0.128 4.128 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.367 0.633 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.369 0.631 45 H 0.271 0.729 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.024 -19.308 -18.985 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.230 6.230 4 C 0.083 3.917 5 C -0.232 4.232 6 C -0.100 4.100 7 C -0.173 4.173 8 C -0.029 4.029 9 C -0.044 4.044 10 N -0.224 5.224 11 C -0.079 4.079 12 C -0.048 4.048 13 O -0.362 6.362 14 C -0.101 4.101 15 C 0.251 3.749 16 O -0.446 6.446 17 N -0.234 5.234 18 C -0.427 4.427 19 H 0.136 0.864 20 C -0.164 4.164 21 N -0.528 5.528 22 Si 0.706 3.294 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.194 1.194 26 C -0.147 4.147 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.214 0.786 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.202 0.798 45 H 0.082 0.918 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.395 -19.426 -17.589 26.572 hybrid contribution 1.868 0.684 -1.678 2.602 sum -2.527 -18.742 -19.267 26.998 Atomic orbital electron populations 1.21777 0.92792 1.02733 1.03677 1.22753 0.95861 0.82167 1.01214 1.86084 1.19185 1.29055 1.88689 1.18962 0.82142 0.94114 0.96446 1.21169 0.94441 0.97776 1.09799 1.20845 0.94266 0.97037 0.97902 1.20990 0.99551 0.92158 1.04637 1.19525 0.92389 0.94918 0.96107 1.21166 0.99632 0.92618 0.90976 1.61784 1.45346 1.02487 1.12759 1.22480 0.86483 0.99147 0.99833 1.23197 0.96994 0.84826 0.99814 1.86712 1.43087 1.29690 1.76673 1.22200 1.02068 0.88559 0.97252 1.19617 0.82910 0.82662 0.89698 1.90528 1.50386 1.54630 1.49067 1.42168 1.59713 1.12690 1.08805 1.19418 1.40922 0.98739 0.83611 0.86446 1.25016 0.97992 0.96989 0.96363 1.69628 1.47548 1.18780 1.16852 0.86675 0.79367 0.81461 0.81936 1.19777 1.20406 1.19418 1.20303 0.94709 0.94826 1.04836 0.91342 0.91547 0.90483 0.92253 0.92080 0.85879 0.86021 0.86254 0.93330 0.89831 0.87454 0.89594 0.93617 0.93492 0.78599 0.89664 0.90056 0.79816 0.91836 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.45 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.78 10.14 -19.40 -0.20 -3.98 16 4 C 0.13 1.60 6.69 -39.22 -0.26 1.33 16 5 C -0.21 -2.25 9.04 -39.43 -0.36 -2.60 16 6 C -0.08 -0.83 10.04 -39.60 -0.40 -1.23 16 7 C -0.15 -1.70 8.02 -39.56 -0.32 -2.01 16 8 C -0.03 -0.36 4.89 -104.65 -0.51 -0.87 16 9 C 0.08 1.07 4.80 -4.98 -0.02 1.04 16 10 N -0.50 -8.34 4.43 -237.52 -1.05 -9.39 16 11 C 0.05 0.79 4.99 -3.83 -0.02 0.77 16 12 C 0.03 0.38 6.23 37.16 0.23 0.62 16 13 O -0.56 -7.62 10.53 -35.23 -0.37 -7.99 16 14 C 0.03 0.54 5.13 -4.98 -0.03 0.51 16 15 C 0.47 11.15 7.25 -10.99 -0.08 11.07 16 16 O -0.56 -15.74 14.19 5.54 0.08 -15.67 16 17 N -0.59 -14.89 5.09 -10.96 -0.06 -14.95 16 18 C -0.30 -8.75 10.16 -14.93 -0.15 -8.90 16 19 H 0.12 3.93 7.39 -52.48 -0.39 3.54 16 20 C 0.04 1.09 5.50 -17.47 -0.10 0.99 16 21 N -0.89 -26.72 13.96 55.50 0.77 -25.95 16 22 Si 0.88 20.13 27.74 -169.99 -4.71 15.41 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -5.66 6.52 56.52 0.37 -5.29 16 26 C -0.13 -1.69 9.64 -39.43 -0.38 -2.07 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.06 0.46 7.66 -51.92 -0.40 0.06 16 32 H 0.12 1.02 6.30 -52.48 -0.33 0.69 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 1.13 6.09 -52.49 -0.32 0.81 16 35 H 0.05 0.55 5.64 -51.93 -0.29 0.26 16 36 H 0.08 0.99 7.90 -51.93 -0.41 0.58 16 37 H 0.11 2.23 5.86 -51.93 -0.30 1.93 16 38 H 0.09 1.31 6.57 -51.93 -0.34 0.97 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.49 4.37 -51.93 -0.23 0.26 16 41 H 0.37 3.24 9.12 45.56 0.42 3.65 16 42 H 0.09 1.43 5.08 -51.92 -0.26 1.17 16 43 H 0.08 1.31 7.96 -51.93 -0.41 0.90 16 44 H 0.37 8.24 5.76 -40.82 -0.24 8.00 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -35.90 365.27 -7.45 -43.35 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -5.61 Total: 14.95 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.80 Total: -1.30 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.33 Total: -50.28 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.49 Total: -27.63 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.71 Total: 15.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.90 -7.45 -43.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452048974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.872 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds