Wall clock time and date at job start Fri Apr 10 2020 14:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47515 * 2 1 4 4 C 1.35892 * 117.00474 * 179.97438 * 3 2 1 5 5 C 1.38750 * 120.05409 * 0.02562 * 4 3 2 6 6 C 1.38130 * 119.94511 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05377 * 0.24916 * 6 5 4 8 8 C 1.38246 * 120.10972 * 359.49556 * 7 6 5 9 9 C 1.50696 * 119.97043 * 180.25540 * 8 7 6 10 10 N 1.46903 * 109.47198 * 270.25086 * 9 8 7 11 11 C 1.46898 * 111.00250 * 66.04435 * 10 9 8 12 12 C 1.52997 * 109.46983 * 53.73624 * 11 10 9 13 13 O 1.42906 * 109.46969 * 67.60282 * 12 11 10 14 14 C 1.46899 * 111.00540 * 190.00444 * 10 9 8 15 15 C 1.50694 * 109.47575 * 171.62696 * 14 10 9 16 16 O 1.21299 * 120.00062 * 353.36564 * 15 14 10 17 17 N 1.34775 * 120.00143 * 173.36557 * 15 14 10 18 18 C 1.37102 * 120.00024 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99675 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00129 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00138 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99991 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47029 * 89.99498 * 22 20 18 24 24 H 1.48497 * 109.47235 * 210.00028 * 22 20 18 25 25 H 1.48505 * 109.46809 * 329.99795 * 22 20 18 26 26 C 1.38162 * 120.05663 * 0.50652 * 8 7 6 27 27 H 1.08996 * 109.46685 * 300.00210 * 1 2 3 28 28 H 1.09000 * 109.47104 * 59.99782 * 1 2 3 29 29 H 1.08999 * 109.46841 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47340 * 239.99634 * 2 1 3 31 31 H 1.09009 * 109.47391 * 119.99710 * 2 1 3 32 32 H 1.08003 * 120.02981 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.97412 * 179.97438 * 6 5 4 34 34 H 1.07993 * 119.94409 * 179.74020 * 7 6 5 35 35 H 1.08998 * 109.47264 * 30.24804 * 9 8 7 36 36 H 1.09003 * 109.47431 * 150.25550 * 9 8 7 37 37 H 1.08996 * 109.47447 * 173.74066 * 11 10 9 38 38 H 1.09006 * 109.47118 * 293.74314 * 11 10 9 39 39 H 1.09006 * 109.47605 * 187.60192 * 12 11 10 40 40 H 1.09007 * 109.47293 * 307.60283 * 12 11 10 41 41 H 0.96704 * 113.99947 * 180.02562 * 13 12 11 42 42 H 1.09009 * 109.46523 * 291.62386 * 14 10 9 43 43 H 1.08998 * 109.47115 * 51.61838 * 14 10 9 44 44 H 0.96996 * 119.99890 * 359.97438 * 17 15 14 45 45 H 0.96998 * 119.99981 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.03022 * 179.77488 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6094 0.0005 7 6 6.0963 1.8878 0.0058 8 6 5.2552 2.9850 0.0005 9 6 5.8332 4.3766 0.0004 10 7 6.0211 4.8290 1.3854 11 6 7.0444 4.0255 2.0674 12 6 8.3315 4.0303 1.2402 13 8 8.8943 5.3439 1.2426 14 6 6.3568 6.2583 1.4315 15 6 6.3397 6.7325 2.8618 16 8 5.9580 5.9905 3.7423 17 7 6.7484 7.9810 3.1628 18 6 6.7333 8.4122 4.4642 19 1 6.3935 7.7515 5.2481 20 6 7.1552 9.6992 4.7746 21 7 7.1402 10.1127 6.0219 22 14 7.7436 10.8417 3.4189 23 1 6.5919 11.6143 2.8881 24 1 8.7579 11.7781 3.9662 25 1 8.3488 10.0407 2.3246 26 6 3.8851 2.8066 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 3.7886 -0.5728 0.0005 33 1 6.2281 -0.2461 0.0009 34 1 7.1669 2.0293 0.0100 35 1 6.7945 4.3708 -0.5134 36 1 5.1507 5.0536 -0.5134 37 1 7.2433 4.4499 3.0515 38 1 6.6879 3.0014 2.1786 39 1 9.0445 3.3288 1.6734 40 1 8.1063 3.7334 0.2159 41 1 9.7143 5.4214 0.7358 42 1 7.3502 6.4120 1.0097 43 1 5.6252 6.8222 0.8529 44 1 7.0539 8.5742 2.4589 45 1 7.4351 11.0110 6.2386 46 1 3.2284 3.6641 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452048974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:59 Heat of formation + Delta-G solvation = -104.694364 kcal Electronic energy + Delta-G solvation = -27409.302260 eV Core-core repulsion = 23491.960689 eV Total energy + Delta-G solvation = -3917.341571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.29493 -40.59333 -39.29521 -38.12958 -36.50480 -35.81311 -33.70189 -32.88428 -32.56959 -30.90925 -30.21207 -28.64467 -26.73246 -25.25784 -24.52967 -23.45811 -22.66667 -21.28942 -21.02357 -20.02482 -18.78584 -18.56934 -17.71862 -17.47411 -17.02270 -17.00116 -16.77726 -16.47688 -16.34277 -15.55071 -15.44903 -15.08147 -14.83485 -14.46837 -14.39306 -14.21449 -14.19672 -13.86532 -13.81318 -13.40321 -13.14872 -13.10186 -12.85450 -12.77788 -12.58734 -12.43700 -12.40265 -12.37285 -12.17507 -11.95436 -11.62905 -11.60046 -11.43967 -10.74049 -10.31100 -10.17792 -9.79914 -9.14834 -8.95508 -8.37895 -5.97314 0.36194 0.53345 1.31447 1.37088 1.45700 2.06469 2.25662 2.28299 2.60654 2.99428 3.18920 3.32166 3.46491 3.81171 3.90324 4.03598 4.05589 4.09759 4.16766 4.23212 4.25293 4.34362 4.38173 4.43326 4.49059 4.56375 4.60168 4.64405 4.75774 4.79890 4.93273 4.94047 5.00984 5.11751 5.19639 5.20585 5.39986 5.51395 5.57447 5.66011 5.86968 5.95063 6.07485 6.25231 6.52110 6.65490 6.93693 6.95525 7.46773 8.06088 8.80298 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018044 B = 0.002794 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.402539 B =10019.293960 C =10924.658646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.340 6.340 4 C 0.112 3.888 5 C -0.213 4.213 6 C -0.081 4.081 7 C -0.157 4.157 8 C -0.040 4.040 9 C 0.089 3.911 10 N -0.526 5.526 11 C 0.051 3.949 12 C 0.041 3.959 13 O -0.583 6.583 14 C 0.044 3.956 15 C 0.462 3.538 16 O -0.612 6.612 17 N -0.594 5.594 18 C -0.323 4.323 19 H 0.052 0.948 20 C -0.018 4.018 21 N -0.938 5.938 22 Si 0.966 3.034 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.233 1.233 26 C -0.154 4.154 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.139 0.861 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.391 0.609 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.387 0.613 45 H 0.278 0.722 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 -20.152 -22.961 30.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.254 6.254 4 C 0.067 3.933 5 C -0.232 4.232 6 C -0.099 4.099 7 C -0.176 4.176 8 C -0.041 4.041 9 C -0.038 4.038 10 N -0.250 5.250 11 C -0.078 4.078 12 C -0.038 4.038 13 O -0.392 6.392 14 C -0.086 4.086 15 C 0.250 3.750 16 O -0.497 6.497 17 N -0.236 5.236 18 C -0.452 4.452 19 H 0.070 0.930 20 C -0.216 4.216 21 N -0.580 5.580 22 Si 0.786 3.214 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.156 1.156 26 C -0.174 4.174 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.157 0.843 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.241 0.759 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.223 0.777 45 H 0.087 0.913 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.842 -20.297 -21.601 29.777 hybrid contribution 1.298 0.777 -0.333 1.549 sum -1.544 -19.520 -21.933 29.402 Atomic orbital electron populations 1.21815 0.91804 1.04173 1.02980 1.23043 0.96727 0.80799 1.02241 1.86061 1.19219 1.31395 1.88775 1.19154 0.82703 0.94479 0.96961 1.21480 0.94693 0.98260 1.08754 1.21246 0.94457 0.97792 0.96376 1.21244 1.00346 0.92050 1.03947 1.19565 0.92221 0.95343 0.96953 1.21201 1.00977 0.92934 0.88665 1.61683 1.46079 1.01670 1.15521 1.22282 0.88838 0.98660 0.97979 1.23059 0.95253 0.84842 1.00654 1.86598 1.44727 1.30299 1.77577 1.22101 1.04207 0.89872 0.92422 1.20871 0.80451 0.81612 0.92058 1.90509 1.51834 1.55839 1.51484 1.42002 1.60539 1.13595 1.07484 1.18979 1.42870 0.98865 0.84481 0.93015 1.26109 0.97175 0.98489 0.99839 1.69814 1.48347 1.19779 1.20026 0.85348 0.79227 0.78404 0.78432 1.18182 1.19912 1.15623 1.20396 0.95303 0.95093 1.06560 0.92476 0.91797 0.87942 0.90610 0.91496 0.83623 0.82971 0.84331 0.90936 0.89144 0.92998 0.89148 0.92061 0.90422 0.75888 0.87435 0.87573 0.77737 0.91275 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.05 0.70 5.46 71.98 0.39 1.10 16 3 O -0.34 -8.15 10.14 -92.33 -0.94 -9.09 16 4 C 0.11 2.74 6.69 22.51 0.15 2.89 16 5 C -0.21 -4.06 9.04 22.37 0.20 -3.86 16 6 C -0.08 -1.38 10.04 22.26 0.22 -1.16 16 7 C -0.16 -3.01 8.02 22.28 0.18 -2.83 16 8 C -0.04 -0.95 4.89 -19.88 -0.10 -1.04 16 9 C 0.09 2.07 4.80 85.56 0.41 2.48 16 10 N -0.53 -17.07 4.43 -905.38 -4.01 -21.08 16 11 C 0.05 1.62 4.99 86.30 0.43 2.05 16 12 C 0.04 0.90 6.23 71.98 0.45 1.34 16 13 O -0.58 -14.28 10.53 -148.98 -1.57 -15.85 16 14 C 0.04 1.53 5.13 85.56 0.44 1.97 16 15 C 0.46 22.67 7.25 87.66 0.64 23.30 16 16 O -0.61 -36.31 14.19 -3.09 -0.04 -36.35 16 17 N -0.59 -30.13 5.09 -306.98 -1.56 -31.70 16 18 C -0.32 -19.89 10.16 84.04 0.85 -19.03 16 19 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 20 C -0.02 -1.06 5.50 84.93 0.47 -0.59 16 21 N -0.94 -58.62 13.96 21.66 0.30 -58.32 16 22 Si 0.97 40.74 27.74 68.60 1.90 42.65 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.23 -8.41 6.52 99.48 0.65 -7.77 16 26 C -0.15 -4.09 9.64 22.37 0.22 -3.88 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 31 H 0.07 0.92 7.66 -2.38 -0.02 0.90 16 32 H 0.15 2.00 6.30 -2.91 -0.02 1.99 16 33 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.14 2.05 6.09 -2.91 -0.02 2.03 16 35 H 0.07 1.34 5.64 -2.39 -0.01 1.33 16 36 H 0.09 1.96 7.90 -2.39 -0.02 1.94 16 37 H 0.05 2.26 5.86 -2.39 -0.01 2.24 16 38 H 0.09 2.72 6.57 -2.38 -0.02 2.71 16 39 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.08 1.25 4.37 -2.38 -0.01 1.24 16 41 H 0.39 5.41 9.12 -74.05 -0.68 4.74 16 42 H 0.11 3.30 5.08 -2.38 -0.01 3.28 16 43 H 0.11 3.16 7.96 -2.39 -0.02 3.14 16 44 H 0.39 16.54 5.76 -92.71 -0.53 16.01 16 45 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.12 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -86.11 365.27 -0.46 -86.57 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: -0.24 Total: 41.52 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 5.69 Total: 1.65 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -5.27 Total: -111.09 kcal Atomic # 8 Polarization: -58.74 SS G_CDS: -2.55 Total: -61.29 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.90 Total: 42.65 kcal Total: -86.11 -0.46 -86.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452048974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.125 kcal (2) G-P(sol) polarization free energy of solvation -86.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds