Wall clock time and date at job start Fri Apr 10 2020 14:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46899 * 111.00077 * 2 1 4 4 C 1.46900 * 111.00126 * 123.95504 * 2 1 3 5 5 C 1.53001 * 109.47330 * 172.04234 * 4 2 1 6 6 H 1.08994 * 109.47331 * 65.36268 * 5 4 2 7 7 C 1.52993 * 109.47257 * 185.36841 * 5 4 2 8 8 O 1.42906 * 109.47280 * 54.99532 * 7 5 4 9 9 N 1.46498 * 109.46659 * 305.36797 * 5 4 2 10 10 C 1.34782 * 119.99923 * 158.38109 * 9 5 4 11 11 O 1.21283 * 119.99633 * 359.97438 * 10 9 5 12 12 C 1.50697 * 119.99848 * 179.72056 * 10 9 5 13 13 C 1.50701 * 109.46835 * 180.27205 * 12 10 9 14 14 C 1.38298 * 119.93303 * 269.72511 * 13 12 10 15 15 C 1.38100 * 120.06944 * 179.72155 * 14 13 12 16 16 C 1.38876 * 119.93132 * 0.58147 * 15 14 13 17 17 O 1.35748 * 120.07012 * 179.68100 * 16 15 14 18 18 C 1.34835 * 116.99865 * 175.14980 * 17 16 15 19 19 H 1.07996 * 119.99787 * 5.09006 * 18 17 16 20 20 C 1.38652 * 119.99808 * 185.08335 * 18 17 16 21 21 N 1.31554 * 119.99979 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00255 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47112 * 89.99350 * 22 20 18 24 24 H 1.48500 * 109.47128 * 209.99604 * 22 20 18 25 25 H 1.48507 * 109.46697 * 329.99542 * 22 20 18 26 26 C 1.38886 * 119.86016 * 359.69335 * 16 15 14 27 27 C 1.38100 * 119.93024 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47475 * 300.98635 * 1 2 3 29 29 H 1.09002 * 109.47378 * 60.98523 * 1 2 3 30 30 H 1.08997 * 109.47564 * 180.98923 * 1 2 3 31 31 H 1.09000 * 109.47407 * 183.95420 * 3 2 1 32 32 H 1.09007 * 109.47201 * 303.95441 * 3 2 1 33 33 H 1.08999 * 109.47339 * 63.95659 * 3 2 1 34 34 H 1.09000 * 109.47279 * 52.03732 * 4 2 1 35 35 H 1.09007 * 109.47001 * 292.03826 * 4 2 1 36 36 H 1.09003 * 109.47504 * 174.99708 * 7 5 4 37 37 H 1.09005 * 109.47007 * 294.99952 * 7 5 4 38 38 H 0.96695 * 113.99892 * 180.02562 * 8 7 5 39 39 H 0.97002 * 120.00261 * 338.37418 * 9 5 4 40 40 H 1.08993 * 109.47578 * 300.27412 * 12 10 9 41 41 H 1.09004 * 109.47146 * 60.27898 * 12 10 9 42 42 H 1.08002 * 119.96651 * 359.97438 * 14 13 12 43 43 H 1.08002 * 120.03760 * 180.27313 * 15 14 13 44 44 H 0.96996 * 120.00246 * 179.97438 * 21 20 18 45 45 H 1.07991 * 120.03391 * 179.97438 * 26 16 15 46 46 H 1.07996 * 119.96331 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5119 -0.9116 0.9963 6 1 3.9801 0.0695 1.0752 7 6 4.0426 -1.8207 2.1066 8 8 3.3450 -3.0676 2.0755 9 7 3.8265 -1.4993 -0.3082 10 6 5.0514 -1.3318 -0.8451 11 8 5.8930 -0.6941 -0.2483 12 6 5.3770 -1.9416 -2.1841 13 6 6.8014 -1.6147 -2.5519 14 6 7.0824 -0.4673 -3.2711 15 6 8.3873 -0.1620 -3.6047 16 6 9.4166 -1.0147 -3.2277 17 8 10.6996 -0.7206 -3.5597 18 6 11.6590 -1.5360 -3.0774 19 1 11.3862 -2.4239 -2.5264 20 6 12.9957 -1.2348 -3.2891 21 7 13.9318 -2.0301 -2.8182 22 14 13.4675 0.3012 -4.2419 23 1 13.6162 1.4408 -3.3015 24 1 14.7537 0.0705 -4.9474 25 1 12.4076 0.6132 -5.2341 26 6 9.1305 -2.1691 -2.5104 27 6 7.8242 -2.4658 -2.1749 28 1 -0.3634 0.5291 0.8810 29 1 -0.3634 0.4985 -0.8987 30 1 -0.3634 -1.0275 0.0177 31 1 3.0827 1.3432 -0.0709 32 1 1.5897 1.9164 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5355 -1.7541 1.1543 35 1 1.7656 -0.2425 2.0656 36 1 5.1076 -1.9963 1.9545 37 1 3.8877 -1.3418 3.0734 38 1 3.6302 -3.6948 2.7539 39 1 3.1534 -2.0091 -0.7856 40 1 5.2549 -3.0234 -2.1301 41 1 4.7045 -1.5373 -2.9407 42 1 6.2810 0.1928 -3.5686 43 1 8.6066 0.7365 -4.1625 44 1 14.8669 -1.8196 -2.9666 45 1 9.9287 -2.8343 -2.2162 46 1 7.6011 -3.3636 -1.6175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808174320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:36 Heat of formation + Delta-G solvation = -79.219164 kcal Electronic energy + Delta-G solvation = -26928.573892 eV Core-core repulsion = 23012.337009 eV Total energy + Delta-G solvation = -3916.236883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.04403 -39.04877 -38.05598 -36.83805 -36.50312 -34.24968 -32.45788 -31.70164 -30.22218 -30.08781 -27.93549 -26.86036 -26.59561 -24.84573 -22.85908 -22.01669 -21.46267 -20.44267 -19.96042 -17.83948 -17.81127 -17.23520 -16.82693 -16.40227 -15.92450 -15.39978 -15.20866 -14.95410 -14.67880 -14.37247 -14.29454 -13.86806 -13.75776 -13.59030 -13.44957 -13.26255 -12.80478 -12.66744 -12.59277 -12.48632 -12.30341 -12.13015 -12.02134 -11.70275 -11.46313 -11.22775 -11.20946 -10.84099 -10.68982 -10.60149 -10.31125 -10.09564 -9.58615 -9.31076 -8.97271 -8.80001 -8.75258 -8.14556 -7.21588 -6.35577 -4.01697 2.24604 2.25829 2.88631 3.23778 3.27194 3.30905 3.45090 3.59275 4.00514 4.29250 4.44082 4.56323 4.73242 4.88809 4.93788 4.98585 4.99461 5.06706 5.09384 5.18456 5.18657 5.27215 5.28612 5.37326 5.45631 5.49336 5.49928 5.64218 5.71092 5.77448 5.77970 5.85739 6.21743 6.42176 6.46272 6.62056 6.65660 6.66770 6.88601 7.11614 7.31255 7.31859 7.39648 7.65283 7.72223 7.87886 8.11117 8.46522 9.00127 9.63730 10.72306 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.002413 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.856235 B =11602.812647 C =12151.433713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.020 3.980 4 C 0.049 3.951 5 C 0.155 3.845 6 H 0.095 0.905 7 C 0.062 3.938 8 O -0.569 6.569 9 N -0.712 5.712 10 C 0.511 3.489 11 O -0.531 6.531 12 C -0.081 4.081 13 C -0.157 4.157 14 C -0.062 4.062 15 C -0.191 4.191 16 C 0.161 3.839 17 O -0.219 6.219 18 C -0.387 4.387 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.882 5.882 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.219 4.219 27 C -0.059 4.059 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.378 0.622 39 H 0.404 0.596 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.278 0.722 45 H 0.132 0.868 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.458 1.028 7.647 28.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.129 4.129 4 C -0.079 4.079 5 C 0.049 3.951 6 H 0.112 0.888 7 C -0.018 4.018 8 O -0.375 6.375 9 N -0.364 5.364 10 C 0.298 3.702 11 O -0.407 6.407 12 C -0.121 4.121 13 C -0.158 4.158 14 C -0.080 4.080 15 C -0.210 4.210 16 C 0.109 3.891 17 O -0.125 6.125 18 C -0.463 4.463 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.520 5.520 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.184 1.184 26 C -0.238 4.238 27 C -0.077 4.077 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.225 0.775 39 H 0.238 0.762 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.089 0.911 45 H 0.150 0.850 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -26.641 1.707 7.022 27.603 hybrid contribution 0.096 0.422 0.880 0.981 sum -26.544 2.129 7.902 27.777 Atomic orbital electron populations 1.22381 0.87143 1.02099 1.00709 1.61941 1.07795 1.14165 1.42748 1.22459 1.01477 0.88494 1.00428 1.22368 0.94333 0.99477 0.91760 1.20939 0.94470 0.96476 0.83233 0.88758 1.22641 0.96446 0.85035 0.97641 1.86427 1.64716 1.26810 1.59532 1.45787 1.14341 1.56122 1.20167 1.20964 0.81347 0.80162 0.87728 1.90729 1.47080 1.40149 1.62714 1.20408 0.96098 1.01586 0.94039 1.18729 0.92772 0.98285 1.06028 1.20403 0.95089 0.95402 0.97143 1.20144 0.91266 1.01106 1.08520 1.19115 0.84946 0.92675 0.92358 1.83571 1.11883 1.51716 1.65290 1.20771 0.84672 1.05653 1.35214 0.87661 1.24462 0.94088 0.98627 0.96898 1.69647 1.00687 1.37412 1.44272 0.86180 0.78035 0.82130 0.80548 1.19932 1.20853 1.18361 1.21218 0.97002 0.99763 1.05861 1.20562 0.92132 0.97892 0.97144 0.95787 0.91232 0.91292 0.90878 0.91273 0.95673 0.88968 0.93793 0.92268 0.93174 0.77481 0.76171 0.89014 0.88915 0.87216 0.86626 0.91144 0.85040 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.60 60.06 0.58 0.73 16 2 N -0.54 -4.23 4.75 -251.26 -1.19 -5.42 16 3 C 0.02 0.15 9.29 60.06 0.56 0.71 16 4 C 0.05 0.38 4.40 -3.82 -0.02 0.36 16 5 C 0.15 1.49 2.03 -67.93 -0.14 1.35 16 6 H 0.09 1.05 6.31 -51.93 -0.33 0.73 16 7 C 0.06 0.56 6.81 37.15 0.25 0.82 16 8 O -0.57 -4.64 12.63 -35.23 -0.44 -5.08 16 9 N -0.71 -7.41 4.77 -53.81 -0.26 -7.67 16 10 C 0.51 7.07 7.71 -10.98 -0.08 6.99 16 11 O -0.53 -9.75 15.57 5.56 0.09 -9.66 16 12 C -0.08 -1.04 5.83 -29.04 -0.17 -1.21 16 13 C -0.16 -2.73 4.38 -104.58 -0.46 -3.19 16 14 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 15 C -0.19 -4.01 9.99 -39.40 -0.39 -4.41 16 16 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 17 O -0.22 -6.01 8.59 0.04 0.00 -6.01 16 18 C -0.39 -11.26 9.95 30.89 0.31 -10.96 16 19 H 0.11 3.12 5.43 -52.49 -0.29 2.84 16 20 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 21 N -0.88 -26.05 13.96 55.48 0.77 -25.28 16 22 Si 0.91 22.27 28.62 -169.99 -4.86 17.40 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.22 -4.99 9.17 -39.39 -0.36 -5.35 16 27 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 28 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.38 8.06 -51.93 -0.42 -0.04 16 31 H 0.07 0.70 6.53 -51.93 -0.34 0.36 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.09 0.73 7.28 -51.93 -0.38 0.35 16 35 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.68 7.92 -51.93 -0.41 0.27 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.38 1.69 9.12 45.56 0.42 2.11 16 39 H 0.40 3.57 8.57 -40.82 -0.35 3.22 16 40 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 41 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 44 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.13 3.12 5.63 -52.49 -0.30 2.83 16 46 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -34.11 383.24 -7.34 -41.45 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.17 Total: 6.35 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.05 Total: -11.85 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.68 Total: -38.37 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.36 Total: -20.75 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.86 Total: 17.40 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.11 -7.34 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808174320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.771 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds