Wall clock time and date at job start Fri Apr 10 2020 14:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46899 * 111.00077 * 2 1 4 4 C 1.46900 * 111.00126 * 123.95504 * 2 1 3 5 5 C 1.53001 * 109.47330 * 172.04234 * 4 2 1 6 6 H 1.08994 * 109.47331 * 65.36268 * 5 4 2 7 7 C 1.52993 * 109.47257 * 185.36841 * 5 4 2 8 8 O 1.42906 * 109.47280 * 54.99532 * 7 5 4 9 9 N 1.46498 * 109.46659 * 305.36797 * 5 4 2 10 10 C 1.34782 * 119.99923 * 158.38109 * 9 5 4 11 11 O 1.21283 * 119.99633 * 359.97438 * 10 9 5 12 12 C 1.50697 * 119.99848 * 179.72056 * 10 9 5 13 13 C 1.50701 * 109.46835 * 180.27205 * 12 10 9 14 14 C 1.38298 * 119.93303 * 269.72511 * 13 12 10 15 15 C 1.38100 * 120.06944 * 179.72155 * 14 13 12 16 16 C 1.38876 * 119.93132 * 0.58147 * 15 14 13 17 17 O 1.35748 * 120.07012 * 179.68100 * 16 15 14 18 18 C 1.34835 * 116.99865 * 175.14980 * 17 16 15 19 19 H 1.07996 * 119.99787 * 5.09006 * 18 17 16 20 20 C 1.38652 * 119.99808 * 185.08335 * 18 17 16 21 21 N 1.31554 * 119.99979 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00255 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47112 * 89.99350 * 22 20 18 24 24 H 1.48500 * 109.47128 * 209.99604 * 22 20 18 25 25 H 1.48507 * 109.46697 * 329.99542 * 22 20 18 26 26 C 1.38886 * 119.86016 * 359.69335 * 16 15 14 27 27 C 1.38100 * 119.93024 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47475 * 300.98635 * 1 2 3 29 29 H 1.09002 * 109.47378 * 60.98523 * 1 2 3 30 30 H 1.08997 * 109.47564 * 180.98923 * 1 2 3 31 31 H 1.09000 * 109.47407 * 183.95420 * 3 2 1 32 32 H 1.09007 * 109.47201 * 303.95441 * 3 2 1 33 33 H 1.08999 * 109.47339 * 63.95659 * 3 2 1 34 34 H 1.09000 * 109.47279 * 52.03732 * 4 2 1 35 35 H 1.09007 * 109.47001 * 292.03826 * 4 2 1 36 36 H 1.09003 * 109.47504 * 174.99708 * 7 5 4 37 37 H 1.09005 * 109.47007 * 294.99952 * 7 5 4 38 38 H 0.96695 * 113.99892 * 180.02562 * 8 7 5 39 39 H 0.97002 * 120.00261 * 338.37418 * 9 5 4 40 40 H 1.08993 * 109.47578 * 300.27412 * 12 10 9 41 41 H 1.09004 * 109.47146 * 60.27898 * 12 10 9 42 42 H 1.08002 * 119.96651 * 359.97438 * 14 13 12 43 43 H 1.08002 * 120.03760 * 180.27313 * 15 14 13 44 44 H 0.96996 * 120.00246 * 179.97438 * 21 20 18 45 45 H 1.07991 * 120.03391 * 179.97438 * 26 16 15 46 46 H 1.07996 * 119.96331 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5119 -0.9116 0.9963 6 1 3.9801 0.0695 1.0752 7 6 4.0426 -1.8207 2.1066 8 8 3.3450 -3.0676 2.0755 9 7 3.8265 -1.4993 -0.3082 10 6 5.0514 -1.3318 -0.8451 11 8 5.8930 -0.6941 -0.2483 12 6 5.3770 -1.9416 -2.1841 13 6 6.8014 -1.6147 -2.5519 14 6 7.0824 -0.4673 -3.2711 15 6 8.3873 -0.1620 -3.6047 16 6 9.4166 -1.0147 -3.2277 17 8 10.6996 -0.7206 -3.5597 18 6 11.6590 -1.5360 -3.0774 19 1 11.3862 -2.4239 -2.5264 20 6 12.9957 -1.2348 -3.2891 21 7 13.9318 -2.0301 -2.8182 22 14 13.4675 0.3012 -4.2419 23 1 13.6162 1.4408 -3.3015 24 1 14.7537 0.0705 -4.9474 25 1 12.4076 0.6132 -5.2341 26 6 9.1305 -2.1691 -2.5104 27 6 7.8242 -2.4658 -2.1749 28 1 -0.3634 0.5291 0.8810 29 1 -0.3634 0.4985 -0.8987 30 1 -0.3634 -1.0275 0.0177 31 1 3.0827 1.3432 -0.0709 32 1 1.5897 1.9164 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5355 -1.7541 1.1543 35 1 1.7656 -0.2425 2.0656 36 1 5.1076 -1.9963 1.9545 37 1 3.8877 -1.3418 3.0734 38 1 3.6302 -3.6948 2.7539 39 1 3.1534 -2.0091 -0.7856 40 1 5.2549 -3.0234 -2.1301 41 1 4.7045 -1.5373 -2.9407 42 1 6.2810 0.1928 -3.5686 43 1 8.6066 0.7365 -4.1625 44 1 14.8669 -1.8196 -2.9666 45 1 9.9287 -2.8343 -2.2162 46 1 7.6011 -3.3636 -1.6175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808174320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:35 Heat of formation + Delta-G solvation = -106.663007 kcal Electronic energy + Delta-G solvation = -26929.763946 eV Core-core repulsion = 23012.337009 eV Total energy + Delta-G solvation = -3917.426938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19452 -40.61178 -39.03179 -38.13948 -37.42340 -35.14639 -34.51315 -33.08359 -31.79863 -31.13368 -28.47976 -28.28723 -27.37151 -26.69918 -23.72148 -23.56117 -22.62760 -21.46635 -21.11876 -19.80540 -19.10104 -18.56374 -17.81316 -17.28229 -16.79132 -16.53386 -16.38699 -16.02489 -15.80153 -15.62984 -15.61887 -15.42691 -15.15685 -14.95939 -14.53556 -14.33090 -14.24845 -14.08032 -14.02209 -13.48356 -13.17796 -13.04166 -12.99565 -12.74779 -12.59559 -12.48234 -12.39978 -12.29361 -12.25113 -11.92108 -11.88348 -11.26971 -11.04922 -10.91545 -10.68558 -9.91522 -9.77192 -9.32538 -8.95918 -8.50090 -6.22465 0.60083 0.64267 1.30109 1.35090 1.51544 1.82788 2.28193 2.31745 2.79623 2.97994 3.08475 3.19846 3.37322 3.77976 3.90427 4.04446 4.07653 4.17615 4.26698 4.27725 4.33634 4.45452 4.48437 4.50413 4.59316 4.65962 4.67864 4.72388 4.75714 4.77272 4.84173 4.99132 5.01832 5.06930 5.08126 5.27334 5.39067 5.58176 5.61817 5.76028 5.81436 5.92132 6.04083 6.08055 6.26424 6.76970 6.84050 6.84208 7.46797 7.59329 8.61790 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.002413 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.856235 B =11602.812647 C =12151.433713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.551 5.551 3 C 0.023 3.977 4 C 0.060 3.940 5 C 0.152 3.848 6 H 0.077 0.923 7 C 0.068 3.932 8 O -0.575 6.575 9 N -0.693 5.693 10 C 0.512 3.488 11 O -0.584 6.584 12 C -0.080 4.080 13 C -0.133 4.133 14 C -0.059 4.059 15 C -0.193 4.193 16 C 0.117 3.883 17 O -0.246 6.246 18 C -0.400 4.400 19 H 0.079 0.921 20 C 0.008 3.992 21 N -0.924 5.924 22 Si 0.972 3.028 23 H -0.268 1.268 24 H -0.264 1.264 25 H -0.262 1.262 26 C -0.238 4.238 27 C -0.065 4.065 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.030 0.970 37 H 0.068 0.932 38 H 0.395 0.605 39 H 0.415 0.585 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.152 0.848 43 H 0.128 0.872 44 H 0.285 0.715 45 H 0.106 0.894 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.512 1.681 7.314 32.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.275 5.275 3 C -0.126 4.126 4 C -0.068 4.068 5 C 0.046 3.954 6 H 0.095 0.905 7 C -0.011 4.011 8 O -0.382 6.382 9 N -0.344 5.344 10 C 0.300 3.700 11 O -0.464 6.464 12 C -0.119 4.119 13 C -0.134 4.134 14 C -0.077 4.077 15 C -0.212 4.212 16 C 0.069 3.931 17 O -0.154 6.154 18 C -0.476 4.476 19 H 0.096 0.904 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.794 3.206 23 H -0.193 1.193 24 H -0.189 1.189 25 H -0.186 1.186 26 C -0.257 4.257 27 C -0.083 4.083 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.244 0.756 39 H 0.252 0.748 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.170 0.830 43 H 0.146 0.854 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -30.786 2.321 6.702 31.592 hybrid contribution 0.949 0.126 1.105 1.462 sum -29.837 2.447 7.807 30.938 Atomic orbital electron populations 1.22414 0.85891 1.02777 1.01149 1.61946 1.08926 1.13944 1.42720 1.22398 1.00263 0.88900 1.01001 1.22250 0.92589 0.99804 0.92206 1.21006 0.95839 0.95743 0.82847 0.90538 1.22469 0.94710 0.85640 0.98320 1.86378 1.64495 1.26766 1.60594 1.45626 1.13434 1.55069 1.20304 1.21039 0.81664 0.79522 0.87770 1.90734 1.48765 1.42779 1.64143 1.20517 0.93266 1.03679 0.94438 1.19298 0.94936 0.96566 1.02642 1.20926 0.94825 0.95964 0.95986 1.20495 0.91691 1.00917 1.08063 1.19664 0.84648 0.94369 0.94465 1.83509 1.12766 1.51996 1.67126 1.20711 0.85844 1.05518 1.35518 0.90370 1.25305 0.93812 1.01866 0.98017 1.69731 1.01221 1.39366 1.46211 0.85197 0.78085 0.78158 0.79126 1.19274 1.18900 1.18638 1.21238 0.98202 0.99499 1.06763 1.20884 0.91047 0.99360 0.97053 0.95434 0.90726 0.90500 0.92786 0.90658 0.95185 0.88556 0.93045 0.95163 0.91382 0.75557 0.74799 0.86145 0.85210 0.83045 0.85397 0.90572 0.87624 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.60 127.69 1.23 1.46 16 2 N -0.55 -7.00 4.75 -948.84 -4.51 -11.50 16 3 C 0.02 0.31 9.29 127.69 1.19 1.50 16 4 C 0.06 0.76 4.40 86.30 0.38 1.14 16 5 C 0.15 2.62 2.03 44.99 0.09 2.71 16 6 H 0.08 1.65 6.31 -2.39 -0.02 1.63 16 7 C 0.07 1.13 6.81 71.98 0.49 1.62 16 8 O -0.57 -7.88 12.63 -148.98 -1.88 -9.76 16 9 N -0.69 -12.41 4.77 -442.55 -2.11 -14.53 16 10 C 0.51 12.75 7.71 87.66 0.68 13.43 16 11 O -0.58 -20.76 15.57 -3.04 -0.05 -20.81 16 12 C -0.08 -1.68 5.83 29.10 0.17 -1.51 16 13 C -0.13 -4.27 4.38 -19.83 -0.09 -4.36 16 14 C -0.06 -1.97 9.69 22.25 0.22 -1.76 16 15 C -0.19 -7.95 9.99 22.39 0.22 -7.73 16 16 C 0.12 5.89 6.65 22.58 0.15 6.04 16 17 O -0.25 -14.14 8.59 -22.77 -0.20 -14.33 16 18 C -0.40 -24.70 9.95 67.92 0.68 -24.02 16 19 H 0.08 5.08 5.43 -2.91 -0.02 5.06 16 20 C 0.01 0.48 5.49 84.83 0.47 0.95 16 21 N -0.92 -57.00 13.96 21.61 0.30 -56.70 16 22 Si 0.97 47.19 28.62 68.60 1.96 49.15 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 26 C -0.24 -11.31 9.17 22.39 0.21 -11.10 16 27 C -0.07 -2.47 9.69 22.25 0.22 -2.25 16 28 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.58 8.06 -2.39 -0.02 0.57 16 31 H 0.05 0.95 6.53 -2.39 -0.02 0.94 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.03 0.37 8.14 -2.39 -0.02 0.36 16 34 H 0.10 1.19 7.28 -2.39 -0.02 1.17 16 35 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.03 0.68 7.92 -2.39 -0.02 0.66 16 37 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.39 2.58 9.12 -74.06 -0.68 1.90 16 39 H 0.42 5.69 8.57 -92.71 -0.79 4.90 16 40 H 0.12 1.97 8.08 -2.39 -0.02 1.95 16 41 H 0.13 1.91 8.08 -2.38 -0.02 1.89 16 42 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 43 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 44 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16 45 H 0.11 5.49 5.63 -2.91 -0.02 5.47 16 46 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -78.98 383.24 -0.66 -79.64 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -0.46 Total: 22.75 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 6.28 Total: -23.90 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -6.32 Total: -82.73 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -2.12 Total: -44.90 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.96 Total: 49.15 kcal Total: -78.98 -0.66 -79.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808174320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.026 kcal (2) G-P(sol) polarization free energy of solvation -78.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds