Wall clock time and date at job start Fri Apr 10 2020 14:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00107 * 2 1 4 4 C 1.50699 * 109.47049 * 293.94956 * 3 2 1 5 5 C 1.38239 * 119.99741 * 90.00164 * 4 3 2 6 6 C 1.38246 * 119.99617 * 179.97438 * 5 4 3 7 7 C 1.38228 * 119.99940 * 0.08936 * 6 5 4 8 8 C 1.38241 * 120.00285 * 359.86760 * 7 6 5 9 9 C 1.38232 * 119.99815 * 0.08474 * 8 7 6 10 10 C 1.46905 * 110.99325 * 123.95192 * 2 1 3 11 11 C 1.53000 * 109.46707 * 161.89763 * 10 2 1 12 12 H 1.09005 * 109.46914 * 56.81480 * 11 10 2 13 13 O 1.42893 * 109.47561 * 296.81571 * 11 10 2 14 14 C 1.53002 * 109.46971 * 176.81264 * 11 10 2 15 15 N 1.46497 * 109.46819 * 185.00204 * 14 11 10 16 16 C 1.36938 * 120.00304 * 90.00372 * 15 14 11 17 17 H 1.08004 * 119.99816 * 9.74877 * 16 15 14 18 18 C 1.38816 * 120.00171 * 189.75009 * 16 15 14 19 19 N 1.31617 * 120.00077 * 5.21677 * 18 16 15 20 20 Si 1.86805 * 119.99901 * 185.21125 * 18 16 15 21 21 H 1.48498 * 109.47025 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46679 * 120.00130 * 20 18 16 23 23 H 1.48497 * 109.47185 * 240.00254 * 20 18 16 24 24 C 1.46500 * 119.99971 * 269.99809 * 15 14 11 25 25 C 1.50702 * 109.47278 * 97.02162 * 24 15 14 26 26 O 1.20821 * 119.99461 * 0.02562 * 25 24 15 27 27 O 1.34227 * 120.00247 * 180.02562 * 25 24 15 28 28 H 1.09005 * 109.46879 * 65.92001 * 1 2 3 29 29 H 1.08998 * 109.47505 * 185.91644 * 1 2 3 30 30 H 1.08998 * 109.47866 * 305.92122 * 1 2 3 31 31 H 1.08997 * 109.47381 * 173.94605 * 3 2 1 32 32 H 1.09005 * 109.47083 * 53.94892 * 3 2 1 33 33 H 1.07996 * 120.00320 * 359.69708 * 5 4 3 34 34 H 1.07994 * 119.99606 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.00046 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.99932 * 180.02562 * 8 7 6 37 37 H 1.07999 * 120.00335 * 179.97438 * 9 8 7 38 38 H 1.09005 * 109.46920 * 281.89482 * 10 2 1 39 39 H 1.08993 * 109.47229 * 41.89887 * 10 2 1 40 40 H 0.96707 * 113.99953 * 300.00457 * 13 11 10 41 41 H 1.09000 * 109.46967 * 304.99972 * 14 11 10 42 42 H 1.08994 * 109.46795 * 65.00203 * 14 11 10 43 43 H 0.96995 * 120.00302 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.47170 * 217.01842 * 24 15 14 45 45 H 1.09000 * 109.47381 * 337.01806 * 24 15 14 46 46 H 0.96699 * 116.99941 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 6 0.4512 2.7490 -1.4080 6 6 0.1227 3.3693 -2.5990 7 6 0.9790 3.2859 -3.6809 8 6 2.1653 2.5846 -3.5710 9 6 2.4943 1.9653 -2.3798 10 6 1.9953 -0.7660 1.1377 11 6 3.4581 -1.1293 0.8748 12 1 4.0313 -0.2201 0.6933 13 8 3.5393 -1.9801 -0.2704 14 6 4.0295 -1.8579 2.0929 15 7 5.4601 -2.0999 1.8904 16 6 6.3769 -1.1702 2.3030 17 1 6.0635 -0.3372 2.9148 18 6 7.7093 -1.2985 1.9351 19 7 8.0741 -2.2539 1.1065 20 14 8.9844 -0.1151 2.6157 21 1 8.3224 0.8595 3.5196 22 1 10.0101 -0.8753 3.3741 23 1 9.6342 0.6108 1.4950 24 6 5.9098 -3.3365 1.2465 25 6 6.1573 -3.0793 -0.2177 26 8 5.9770 -1.9760 -0.6760 27 8 6.5781 -4.0758 -1.0125 28 1 -0.3633 0.4193 -0.9383 29 1 -0.3634 -1.0221 0.1059 30 1 -0.3635 0.6029 0.8322 31 1 3.0797 1.3444 0.1084 32 1 1.5610 1.9273 0.8309 33 1 -0.2206 2.8092 -0.5646 34 1 -0.8039 3.9174 -2.6847 35 1 0.7222 3.7701 -4.6115 36 1 2.8346 2.5199 -4.4162 37 1 3.4208 1.4170 -2.2941 38 1 1.9277 -0.1636 2.0437 39 1 1.4114 -1.6777 1.2631 40 1 3.0510 -2.8099 -0.1794 41 1 3.8871 -1.2447 2.9827 42 1 3.5145 -2.8098 2.2213 43 1 9.0051 -2.3438 0.8497 44 1 6.8327 -3.6762 1.7167 45 1 5.1427 -4.1031 1.3561 46 1 6.7235 -3.8625 -1.9443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830855630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:28 Heat of formation + Delta-G solvation = -69.677608 kcal Electronic energy + Delta-G solvation = -28500.373092 eV Core-core repulsion = 24584.549962 eV Total energy + Delta-G solvation = -3915.823130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.47270 -38.43210 -37.71212 -36.05637 -34.77232 -33.86860 -31.71250 -31.33402 -30.85260 -29.41161 -27.30299 -26.88573 -25.72999 -23.27857 -22.45242 -21.83625 -21.00682 -20.32757 -19.80598 -16.92065 -16.77643 -16.29547 -15.89963 -15.67116 -15.46083 -15.00513 -14.91340 -14.65898 -14.52339 -14.23205 -13.89704 -13.81329 -13.35568 -13.19814 -12.91016 -12.78628 -12.65258 -12.42466 -11.85612 -11.71135 -11.48090 -11.31117 -11.20330 -10.98083 -10.90356 -10.82583 -10.78397 -10.40467 -10.18589 -10.09646 -10.01224 -9.63874 -9.35170 -8.85262 -8.72226 -8.71456 -8.40507 -8.07355 -7.01101 -5.82662 -3.22069 1.38003 1.47396 3.36181 3.41923 3.44961 3.73143 4.22505 4.36823 4.48525 4.83355 4.84095 4.87900 5.02582 5.10267 5.13835 5.19297 5.34328 5.40760 5.43288 5.50615 5.54889 5.57820 5.71513 5.81158 5.83945 5.88086 5.92962 6.02595 6.08484 6.11886 6.17935 6.46935 6.48034 6.56138 6.58033 6.73829 6.87068 7.05092 7.18270 7.24675 7.30184 7.39628 7.64400 8.22234 8.30743 8.56533 9.09811 9.69865 9.97361 10.15514 11.23293 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.003680 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.607506 B = 7606.459601 C = 7891.099742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.522 5.522 3 C 0.091 3.909 4 C -0.070 4.070 5 C -0.117 4.117 6 C -0.127 4.127 7 C -0.126 4.126 8 C -0.122 4.122 9 C -0.091 4.091 10 C 0.021 3.979 11 C 0.096 3.904 12 H 0.095 0.905 13 O -0.520 6.520 14 C 0.117 3.883 15 N -0.569 5.569 16 C -0.235 4.235 17 H 0.079 0.921 18 C -0.002 4.002 19 N -0.918 5.918 20 Si 0.919 3.081 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.201 3.799 25 C 0.485 3.515 26 O -0.502 6.502 27 O -0.553 6.553 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.019 0.981 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.344 0.656 41 H 0.056 0.944 42 H 0.043 0.957 43 H 0.256 0.744 44 H 0.119 0.881 45 H 0.035 0.965 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.183 4.072 -3.114 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.245 5.245 3 C -0.036 4.036 4 C -0.070 4.070 5 C -0.136 4.136 6 C -0.146 4.146 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.109 4.109 10 C -0.108 4.108 11 C 0.033 3.967 12 H 0.113 0.887 13 O -0.321 6.321 14 C -0.011 4.011 15 N -0.289 5.289 16 C -0.364 4.364 17 H 0.096 0.904 18 C -0.198 4.198 19 N -0.567 5.567 20 Si 0.750 3.250 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.072 3.928 25 C 0.324 3.676 26 O -0.387 6.387 27 O -0.363 6.363 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.108 0.892 32 H 0.055 0.945 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.187 0.813 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.137 0.863 45 H 0.053 0.947 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -14.591 4.561 -3.448 15.672 hybrid contribution 0.205 0.948 0.380 1.041 sum -14.387 5.509 -3.067 15.708 Atomic orbital electron populations 1.22454 0.88237 1.01231 1.00532 1.61922 1.06722 1.12390 1.43493 1.21125 1.01504 0.87957 0.93015 1.19767 0.94473 0.96990 0.95780 1.21026 0.96479 0.98342 0.97745 1.21036 0.99605 1.00466 0.93446 1.21101 0.94894 0.99895 0.98507 1.21184 0.97004 0.97948 0.97847 1.21200 0.99882 0.97570 0.92272 1.23066 0.99116 0.97543 0.91074 1.22710 0.90789 0.94990 0.88166 0.88683 1.86907 1.74661 1.31573 1.38937 1.21630 0.85854 0.97659 0.95915 1.43968 0.99899 1.19331 1.65676 1.19392 0.88062 1.04657 1.24293 0.90364 1.24776 0.97833 0.98709 0.98435 1.69565 1.16451 1.34035 1.36642 0.85939 0.81250 0.79947 0.77876 1.20507 1.21646 1.21789 1.20399 0.99789 0.86645 0.85931 1.24572 0.71554 0.82133 0.89310 1.90498 1.48648 1.24466 1.75044 1.84613 1.82070 1.45849 1.23802 0.91432 0.91804 0.96273 0.89196 0.94462 0.86716 0.86523 0.86515 0.86188 0.85387 0.94469 0.91109 0.81302 0.92579 0.93819 0.93260 0.86350 0.94734 0.77205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.00 60.06 0.54 0.82 16 2 N -0.52 -7.47 4.62 -244.37 -1.13 -8.60 16 3 C 0.09 1.30 4.96 -4.98 -0.02 1.28 16 4 C -0.07 -0.96 4.88 -104.62 -0.51 -1.48 16 5 C -0.12 -1.40 8.12 -39.58 -0.32 -1.72 16 6 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 7 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 8 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 9 C -0.09 -1.33 9.70 -39.59 -0.38 -1.71 16 10 C 0.02 0.29 4.64 -3.82 -0.02 0.28 16 11 C 0.10 1.74 3.04 -26.73 -0.08 1.66 16 12 H 0.10 2.09 6.61 -51.93 -0.34 1.75 16 13 O -0.52 -10.27 9.72 -57.57 -0.56 -10.83 16 14 C 0.12 2.20 5.36 -4.04 -0.02 2.18 16 15 N -0.57 -13.41 2.06 -174.61 -0.36 -13.77 16 16 C -0.24 -6.17 9.59 -15.06 -0.14 -6.31 16 17 H 0.08 1.99 7.82 -52.48 -0.41 1.58 16 18 C 0.00 -0.06 5.31 -17.43 -0.09 -0.15 16 19 N -0.92 -25.74 7.83 55.49 0.43 -25.31 16 20 Si 0.92 21.88 29.56 -169.99 -5.02 16.86 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 C 0.20 4.72 5.46 -5.19 -0.03 4.69 16 25 C 0.49 12.00 5.13 36.01 0.18 12.19 16 26 O -0.50 -13.97 14.28 -26.17 -0.37 -14.34 16 27 O -0.55 -12.14 13.42 -39.25 -0.53 -12.67 16 28 H 0.07 0.81 6.56 -51.93 -0.34 0.47 16 29 H 0.06 0.69 7.84 -51.93 -0.41 0.29 16 30 H 0.02 0.20 8.06 -51.93 -0.42 -0.22 16 31 H 0.09 1.47 6.43 -51.93 -0.33 1.14 16 32 H 0.04 0.49 8.01 -51.93 -0.42 0.07 16 33 H 0.11 1.18 8.03 -52.49 -0.42 0.76 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 38 H 0.04 0.50 8.02 -51.93 -0.42 0.09 16 39 H 0.07 0.89 7.77 -51.93 -0.40 0.49 16 40 H 0.34 5.64 9.05 45.56 0.41 6.06 16 41 H 0.06 1.00 8.03 -51.93 -0.42 0.58 16 42 H 0.04 0.71 7.85 -51.93 -0.41 0.31 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.12 3.06 6.22 -51.93 -0.32 2.74 16 45 H 0.03 0.70 7.82 -51.93 -0.41 0.30 16 46 H 0.37 6.88 9.10 45.56 0.41 7.30 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -32.46 371.88 -9.49 -41.96 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -5.46 Total: 14.93 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -2.09 Total: 6.18 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -1.05 Total: -47.68 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.46 Total: -37.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.46 -9.49 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830855630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.721 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds