Wall clock time and date at job start Fri Apr 10 2020 14:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00107 * 2 1 4 4 C 1.50699 * 109.47049 * 293.94956 * 3 2 1 5 5 C 1.38239 * 119.99741 * 90.00164 * 4 3 2 6 6 C 1.38246 * 119.99617 * 179.97438 * 5 4 3 7 7 C 1.38228 * 119.99940 * 0.08936 * 6 5 4 8 8 C 1.38241 * 120.00285 * 359.86760 * 7 6 5 9 9 C 1.38232 * 119.99815 * 0.08474 * 8 7 6 10 10 C 1.46905 * 110.99325 * 123.95192 * 2 1 3 11 11 C 1.53000 * 109.46707 * 161.89763 * 10 2 1 12 12 H 1.09005 * 109.46914 * 56.81480 * 11 10 2 13 13 O 1.42893 * 109.47561 * 296.81571 * 11 10 2 14 14 C 1.53002 * 109.46971 * 176.81264 * 11 10 2 15 15 N 1.46497 * 109.46819 * 185.00204 * 14 11 10 16 16 C 1.36938 * 120.00304 * 90.00372 * 15 14 11 17 17 H 1.08004 * 119.99816 * 9.74877 * 16 15 14 18 18 C 1.38816 * 120.00171 * 189.75009 * 16 15 14 19 19 N 1.31617 * 120.00077 * 5.21677 * 18 16 15 20 20 Si 1.86805 * 119.99901 * 185.21125 * 18 16 15 21 21 H 1.48498 * 109.47025 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46679 * 120.00130 * 20 18 16 23 23 H 1.48497 * 109.47185 * 240.00254 * 20 18 16 24 24 C 1.46500 * 119.99971 * 269.99809 * 15 14 11 25 25 C 1.50702 * 109.47278 * 97.02162 * 24 15 14 26 26 O 1.20821 * 119.99461 * 0.02562 * 25 24 15 27 27 O 1.34227 * 120.00247 * 180.02562 * 25 24 15 28 28 H 1.09005 * 109.46879 * 65.92001 * 1 2 3 29 29 H 1.08998 * 109.47505 * 185.91644 * 1 2 3 30 30 H 1.08998 * 109.47866 * 305.92122 * 1 2 3 31 31 H 1.08997 * 109.47381 * 173.94605 * 3 2 1 32 32 H 1.09005 * 109.47083 * 53.94892 * 3 2 1 33 33 H 1.07996 * 120.00320 * 359.69708 * 5 4 3 34 34 H 1.07994 * 119.99606 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.00046 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.99932 * 180.02562 * 8 7 6 37 37 H 1.07999 * 120.00335 * 179.97438 * 9 8 7 38 38 H 1.09005 * 109.46920 * 281.89482 * 10 2 1 39 39 H 1.08993 * 109.47229 * 41.89887 * 10 2 1 40 40 H 0.96707 * 113.99953 * 300.00457 * 13 11 10 41 41 H 1.09000 * 109.46967 * 304.99972 * 14 11 10 42 42 H 1.08994 * 109.46795 * 65.00203 * 14 11 10 43 43 H 0.96995 * 120.00302 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.47170 * 217.01842 * 24 15 14 45 45 H 1.09000 * 109.47381 * 337.01806 * 24 15 14 46 46 H 0.96699 * 116.99941 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 6 0.4512 2.7490 -1.4080 6 6 0.1227 3.3693 -2.5990 7 6 0.9790 3.2859 -3.6809 8 6 2.1653 2.5846 -3.5710 9 6 2.4943 1.9653 -2.3798 10 6 1.9953 -0.7660 1.1377 11 6 3.4581 -1.1293 0.8748 12 1 4.0313 -0.2201 0.6933 13 8 3.5393 -1.9801 -0.2704 14 6 4.0295 -1.8579 2.0929 15 7 5.4601 -2.0999 1.8904 16 6 6.3769 -1.1702 2.3030 17 1 6.0635 -0.3372 2.9148 18 6 7.7093 -1.2985 1.9351 19 7 8.0741 -2.2539 1.1065 20 14 8.9844 -0.1151 2.6157 21 1 8.3224 0.8595 3.5196 22 1 10.0101 -0.8753 3.3741 23 1 9.6342 0.6108 1.4950 24 6 5.9098 -3.3365 1.2465 25 6 6.1573 -3.0793 -0.2177 26 8 5.9770 -1.9760 -0.6760 27 8 6.5781 -4.0758 -1.0125 28 1 -0.3633 0.4193 -0.9383 29 1 -0.3634 -1.0221 0.1059 30 1 -0.3635 0.6029 0.8322 31 1 3.0797 1.3444 0.1084 32 1 1.5610 1.9273 0.8309 33 1 -0.2206 2.8092 -0.5646 34 1 -0.8039 3.9174 -2.6847 35 1 0.7222 3.7701 -4.6115 36 1 2.8346 2.5199 -4.4162 37 1 3.4208 1.4170 -2.2941 38 1 1.9277 -0.1636 2.0437 39 1 1.4114 -1.6777 1.2631 40 1 3.0510 -2.8099 -0.1794 41 1 3.8871 -1.2447 2.9827 42 1 3.5145 -2.8098 2.2213 43 1 9.0051 -2.3438 0.8497 44 1 6.8327 -3.6762 1.7167 45 1 5.1427 -4.1031 1.3561 46 1 6.7235 -3.8625 -1.9443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830855630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:27 Heat of formation + Delta-G solvation = -91.944112 kcal Electronic energy + Delta-G solvation = -28501.338640 eV Core-core repulsion = 24584.549962 eV Total energy + Delta-G solvation = -3916.788679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.52158 -40.22981 -39.07346 -37.50871 -36.40708 -35.80750 -33.28969 -32.65978 -31.80977 -30.88138 -29.00385 -28.02788 -27.22849 -24.79219 -23.43629 -23.16185 -22.37014 -21.67812 -21.48017 -18.80419 -18.17680 -17.74441 -17.47692 -16.88940 -16.74950 -16.61641 -16.46834 -15.92191 -15.77417 -15.73896 -15.46443 -15.17737 -14.85030 -14.60721 -14.30308 -14.07829 -13.62574 -13.42541 -13.30128 -13.13641 -12.91835 -12.84468 -12.67944 -12.62937 -12.44712 -12.16155 -11.99361 -11.91567 -11.85548 -11.81047 -11.70439 -11.50914 -11.04277 -10.51649 -10.42984 -9.81101 -9.69304 -9.15669 -8.87556 -7.86335 -5.24278 0.42683 0.50622 1.43996 1.46846 1.54637 2.41667 2.56388 2.74476 3.01394 3.17096 3.41390 3.65486 3.81653 3.88945 3.94126 4.12445 4.16169 4.26510 4.29960 4.37451 4.41013 4.57974 4.61557 4.66298 4.67934 4.71965 4.78778 4.80469 4.82452 5.03627 5.04077 5.11914 5.16544 5.36805 5.45380 5.52638 5.55963 5.60688 5.62100 5.74144 6.05778 6.14850 6.21172 6.28223 6.47726 7.10211 7.24249 7.77591 8.08939 8.20350 9.16983 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.003680 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.607506 B = 7606.459601 C = 7891.099742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.541 5.541 3 C 0.097 3.903 4 C -0.083 4.083 5 C -0.117 4.117 6 C -0.122 4.122 7 C -0.125 4.125 8 C -0.132 4.132 9 C -0.121 4.121 10 C 0.034 3.966 11 C 0.110 3.890 12 H 0.046 0.954 13 O -0.544 6.544 14 C 0.114 3.886 15 N -0.582 5.582 16 C -0.235 4.235 17 H 0.080 0.920 18 C -0.057 4.057 19 N -0.939 5.939 20 Si 0.972 3.028 21 H -0.267 1.267 22 H -0.287 1.287 23 H -0.308 1.308 24 C 0.202 3.798 25 C 0.489 3.511 26 O -0.540 6.540 27 O -0.548 6.548 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.096 0.904 40 H 0.359 0.641 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.245 0.755 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.302 4.527 -2.690 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.265 5.265 3 C -0.030 4.030 4 C -0.083 4.083 5 C -0.136 4.136 6 C -0.140 4.140 7 C -0.143 4.143 8 C -0.150 4.150 9 C -0.140 4.140 10 C -0.094 4.094 11 C 0.047 3.953 12 H 0.064 0.936 13 O -0.347 6.347 14 C -0.012 4.012 15 N -0.302 5.302 16 C -0.365 4.365 17 H 0.098 0.902 18 C -0.249 4.249 19 N -0.589 5.589 20 Si 0.802 3.198 21 H -0.191 1.191 22 H -0.213 1.213 23 H -0.236 1.236 24 C 0.073 3.927 25 C 0.330 3.670 26 O -0.427 6.427 27 O -0.359 6.359 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.153 0.847 34 H 0.168 0.832 35 H 0.164 0.836 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.204 0.796 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.112 0.888 45 H 0.089 0.911 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -17.751 4.998 -3.008 18.684 hybrid contribution 1.102 0.791 0.177 1.368 sum -16.649 5.789 -2.830 17.852 Atomic orbital electron populations 1.22454 0.86156 1.02346 1.01030 1.61825 1.08590 1.12306 1.43771 1.20988 0.99439 0.88586 0.94015 1.19791 0.95457 0.97948 0.95143 1.21240 0.95701 0.97599 0.99023 1.21460 1.00473 0.99475 0.92594 1.21457 0.93878 0.98967 0.99948 1.21358 0.98196 0.98117 0.97298 1.21093 0.99453 0.99302 0.94130 1.22838 0.96403 0.98822 0.91366 1.22344 0.92921 0.92835 0.87176 0.93628 1.86876 1.75430 1.32630 1.39795 1.21852 0.83495 0.99604 0.96297 1.44131 1.01634 1.18901 1.65539 1.19683 0.88730 1.04648 1.23438 0.90185 1.25431 0.99580 1.00388 0.99484 1.69743 1.15707 1.35421 1.38066 0.85101 0.79328 0.78506 0.76855 1.19113 1.21324 1.23643 1.20331 0.99916 0.87555 0.84891 1.24843 0.70539 0.81729 0.89920 1.90493 1.50388 1.25964 1.75884 1.84553 1.81500 1.44899 1.24977 0.91672 0.90577 0.94719 0.92787 0.93084 0.84668 0.83206 0.83608 0.85361 0.88817 0.93477 0.88560 0.79643 0.91641 0.90526 0.94447 0.88801 0.91113 0.75413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.00 127.69 1.15 1.73 16 2 N -0.54 -15.02 4.62 -927.05 -4.28 -19.30 16 3 C 0.10 2.83 4.96 85.56 0.42 3.25 16 4 C -0.08 -2.31 4.88 -19.87 -0.10 -2.41 16 5 C -0.12 -2.55 8.12 22.27 0.18 -2.37 16 6 C -0.12 -2.30 10.05 22.27 0.22 -2.07 16 7 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 8 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 9 C -0.12 -3.75 9.70 22.27 0.22 -3.54 16 10 C 0.03 0.92 4.64 86.30 0.40 1.32 16 11 C 0.11 3.98 3.04 30.60 0.09 4.07 16 12 H 0.05 2.13 6.61 -2.38 -0.02 2.11 16 13 O -0.54 -21.59 9.72 -127.62 -1.24 -22.83 16 14 C 0.11 4.12 5.36 86.38 0.46 4.58 16 15 N -0.58 -27.39 2.06 -706.34 -1.45 -28.85 16 16 C -0.24 -12.49 9.59 84.03 0.81 -11.69 16 17 H 0.08 4.11 7.82 -2.91 -0.02 4.09 16 18 C -0.06 -3.13 5.31 84.86 0.45 -2.68 16 19 N -0.94 -54.01 7.83 21.65 0.17 -53.84 16 20 Si 0.97 46.00 29.56 68.60 2.03 48.03 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 23 H -0.31 -15.34 7.11 99.48 0.71 -14.64 16 24 C 0.20 9.43 5.46 85.63 0.47 9.90 16 25 C 0.49 24.41 5.13 71.24 0.37 24.78 16 26 O -0.54 -30.89 14.28 29.08 0.42 -30.48 16 27 O -0.55 -23.99 13.42 -51.39 -0.69 -24.68 16 28 H 0.06 1.40 6.56 -2.38 -0.02 1.38 16 29 H 0.08 1.40 7.84 -2.39 -0.02 1.38 16 30 H 0.03 0.62 8.06 -2.39 -0.02 0.60 16 31 H 0.05 1.93 6.43 -2.39 -0.02 1.92 16 32 H 0.05 1.30 8.01 -2.38 -0.02 1.28 16 33 H 0.14 2.34 8.03 -2.91 -0.02 2.31 16 34 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16 37 H 0.09 3.44 8.06 -2.91 -0.02 3.41 16 38 H 0.05 1.17 8.02 -2.38 -0.02 1.16 16 39 H 0.10 2.10 7.77 -2.39 -0.02 2.08 16 40 H 0.36 11.33 9.05 -74.05 -0.67 10.66 16 41 H 0.07 2.23 8.03 -2.39 -0.02 2.21 16 42 H 0.08 2.27 7.85 -2.39 -0.02 2.25 16 43 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.09 4.91 6.22 -2.38 -0.01 4.89 16 45 H 0.07 2.75 7.82 -2.39 -0.02 2.73 16 46 H 0.39 14.32 9.10 -74.06 -0.67 13.64 16 Total: -1.00 -72.82 371.88 0.19 -72.63 By element: Atomic # 1 Polarization: 40.19 SS G_CDS: -0.35 Total: 39.84 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 5.59 Total: 19.47 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -5.56 Total: -101.98 kcal Atomic # 8 Polarization: -76.47 SS G_CDS: -1.51 Total: -77.98 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -72.82 0.19 -72.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830855630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.314 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds