Wall clock time and date at job start Fri Apr 10 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45197 * 109.47110 * 2 1 4 4 C 1.34227 * 116.99646 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00277 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99996 * 179.97438 * 4 3 2 7 7 H 1.09002 * 110.36364 * 26.64906 * 6 4 3 8 8 C 1.54662 * 110.41201 * 149.12504 * 6 4 3 9 9 N 1.48654 * 104.65690 * 142.46477 * 8 6 4 10 10 C 1.46896 * 110.99878 * 201.49659 * 9 8 6 11 11 C 1.53002 * 109.47380 * 290.12672 * 10 9 8 12 12 H 1.08995 * 109.47016 * 55.00033 * 11 10 9 13 13 C 1.47203 * 109.46942 * 294.99842 * 11 10 9 14 14 N 9.19248 * 131.01190 * 15.87537 * 2 1 3 15 15 C 1.53003 * 109.47153 * 174.99990 * 11 10 9 16 16 C 1.50699 * 109.47096 * 185.00038 * 15 11 10 17 17 H 1.08001 * 120.00209 * 359.97438 * 16 15 11 18 18 C 1.37876 * 119.99906 * 180.02562 * 16 15 11 19 19 N 1.31511 * 120.00081 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99845 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47078 * 89.99851 * 20 18 16 22 22 H 1.48498 * 109.47084 * 209.99781 * 20 18 16 23 23 H 1.48496 * 109.47186 * 329.99762 * 20 18 16 24 24 C 1.48822 * 104.42065 * 321.17107 * 9 8 6 25 25 C 1.53211 * 110.40994 * 264.30905 * 6 4 3 26 26 C 1.52905 * 115.83830 * 110.81036 * 25 6 4 27 27 O 1.44404 * 85.13685 * 220.62999 * 26 25 6 28 28 C 1.44410 * 93.54599 * 23.37014 * 27 26 25 29 29 H 1.09001 * 109.47483 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47258 * 300.00182 * 1 2 3 31 31 H 1.08998 * 109.47477 * 60.00031 * 1 2 3 32 32 H 1.09001 * 109.46734 * 239.99842 * 2 1 3 33 33 H 1.09004 * 109.46793 * 120.00499 * 2 1 3 34 34 H 1.09005 * 110.40037 * 261.25494 * 8 6 4 35 35 H 1.08994 * 110.39905 * 23.55436 * 8 6 4 36 36 H 1.09001 * 109.47185 * 50.12655 * 10 9 8 37 37 H 1.09008 * 109.47293 * 170.12779 * 10 9 8 38 38 H 1.09002 * 109.47111 * 304.99943 * 15 11 10 39 39 H 1.08997 * 109.47050 * 64.99904 * 15 11 10 40 40 H 0.97005 * 120.00186 * 179.97438 * 19 18 16 41 41 H 1.09004 * 110.46683 * 279.74858 * 24 9 8 42 42 H 1.08995 * 110.47036 * 157.15534 * 24 9 8 43 43 H 1.08998 * 113.92408 * 334.67828 * 26 25 6 44 44 H 1.09001 * 113.92243 * 106.58250 * 26 25 6 45 45 H 1.08995 * 113.91959 * 222.57542 * 28 27 26 46 46 H 1.08998 * 113.91877 * 90.67629 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9373 -0.0012 7 1 3.2220 3.6370 0.4572 8 6 5.2769 2.9603 0.7422 9 7 6.1150 3.9119 -0.0336 10 6 7.5439 3.6765 0.2125 11 6 7.8914 4.0974 1.6419 12 1 7.2382 3.5775 2.3426 13 6 7.7060 5.5508 1.7841 14 7 7.5623 6.6718 1.8974 15 6 9.3484 3.7376 1.9396 16 6 9.6552 4.0391 3.3839 17 1 8.8880 4.4470 4.0252 18 6 10.9158 3.7952 3.8862 19 7 11.8503 3.2989 3.1052 20 14 11.2964 4.1696 5.6763 21 1 11.0050 2.9724 6.5053 22 1 12.7307 4.5290 5.8128 23 1 10.4559 5.3051 6.1340 24 6 5.7665 3.6393 -1.4546 25 6 4.2561 3.3761 -1.4303 26 6 3.3787 4.4863 -2.0097 27 8 3.4259 3.7175 -3.2311 28 6 3.7190 2.4801 -2.5466 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.1442 3.3166 1.7638 35 1 5.7270 1.9677 0.7422 36 1 7.7654 2.6173 0.0817 37 1 8.1352 4.2611 -0.4923 38 1 9.5068 2.6762 1.7484 39 1 10.0059 4.3244 1.2982 40 1 12.7373 3.1276 3.4586 41 1 6.3008 2.7607 -1.8162 42 1 5.9924 4.5061 -2.0755 43 1 2.3865 4.5445 -1.5621 44 1 3.8766 5.4536 -2.0767 45 1 4.4834 1.8755 -3.0345 46 1 2.8336 1.9090 -2.2676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880004739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:42 Heat of formation + Delta-G solvation = -69.457045 kcal Electronic energy + Delta-G solvation = -27755.589980 eV Core-core repulsion = 23839.776414 eV Total energy + Delta-G solvation = -3915.813566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.93320 -40.25750 -38.32234 -36.94478 -36.00798 -33.89071 -32.81170 -32.06010 -30.85461 -29.59730 -27.15842 -26.95483 -25.05621 -24.55508 -23.17563 -21.87611 -21.64702 -20.98118 -19.29877 -18.14002 -17.38627 -17.01049 -16.61242 -16.38549 -16.22550 -16.19104 -15.55321 -15.04526 -14.73369 -14.45815 -14.19119 -14.00567 -13.69931 -13.48934 -13.18760 -12.98908 -12.74582 -12.51871 -12.37260 -12.19266 -12.08233 -11.99369 -11.92462 -11.81951 -11.43170 -11.21440 -11.12759 -11.04919 -10.89997 -10.82963 -10.67383 -10.56384 -10.54408 -10.21362 -10.00420 -9.54727 -9.24298 -8.55503 -8.45796 -6.10571 -4.13822 1.84275 2.23919 3.25227 3.28613 3.35628 3.40153 3.64982 3.71556 3.81134 3.98472 4.07352 4.27122 4.40720 4.49779 4.53770 4.60636 4.69071 4.86214 4.87531 4.89003 4.97430 5.08765 5.23279 5.27644 5.29187 5.31251 5.37466 5.40132 5.52909 5.57392 5.59572 5.60782 5.68201 5.77409 5.77976 5.80936 5.94475 6.10442 6.29177 6.42447 6.69697 6.93880 7.41002 7.43351 7.50811 7.84400 8.21612 8.56120 8.90751 9.51758 11.00339 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.002983 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.947643 B = 9383.852482 C =10329.251651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.471 3.529 5 O -0.497 6.497 6 C -0.084 4.084 7 H 0.118 0.882 8 C 0.039 3.961 9 N -0.508 5.508 10 C 0.051 3.949 11 C 0.012 3.988 12 H 0.099 0.901 13 C 0.255 3.745 14 N -0.478 5.478 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.891 5.891 20 Si 0.891 3.109 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.058 3.942 25 C -0.117 4.117 26 C 0.056 3.944 27 O -0.375 6.375 28 C 0.044 3.956 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.263 0.737 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.788 -6.976 -10.642 25.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.313 3.687 5 O -0.383 6.383 6 C -0.104 4.104 7 H 0.136 0.864 8 C -0.089 4.089 9 N -0.231 5.231 10 C -0.078 4.078 11 C -0.010 4.010 12 H 0.117 0.883 13 C -0.062 4.062 14 N -0.154 5.154 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.070 4.070 25 C -0.117 4.117 26 C -0.020 4.020 27 O -0.294 6.294 28 C -0.033 4.033 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.738 -5.030 -10.595 24.700 hybrid contribution 0.614 -1.394 1.063 1.858 sum -21.124 -6.424 -9.531 24.048 Atomic orbital electron populations 1.21814 0.92485 1.03074 1.03623 1.23073 0.95481 0.80059 1.02815 1.86537 1.24414 1.32608 1.83924 1.23414 0.80662 0.92372 0.72240 1.90695 1.60294 1.42762 1.44581 1.21775 0.99170 0.91186 0.98271 0.86416 1.23280 0.89952 0.97211 0.98421 1.65586 1.05940 1.47722 1.03878 1.22459 0.87062 1.00837 0.97418 1.19188 1.03292 0.82984 0.95489 0.88315 1.28824 0.90888 0.94826 0.91630 1.80981 1.11234 1.13228 1.09998 1.19180 0.85955 0.98026 0.97584 1.21124 0.96884 1.43212 0.95214 0.92501 1.24950 0.96252 0.94894 0.97856 1.69935 1.03455 1.44036 1.35566 0.86593 0.77628 0.78776 0.85111 1.20476 1.21137 1.19830 1.22805 0.90813 1.01743 0.91655 1.23723 0.98335 0.97200 0.92489 1.23982 0.98752 0.96184 0.83110 1.89761 1.93429 1.19400 1.26763 1.24023 0.99392 0.89113 0.90819 0.90156 0.91353 0.91444 0.91166 0.90960 0.88603 0.90827 0.92113 0.89666 0.94428 0.95494 0.92777 0.92191 0.88676 0.89487 0.87934 0.88500 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.29 37.16 0.38 -0.40 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.36 -3.39 9.80 -39.25 -0.38 -3.77 16 4 C 0.47 5.07 5.10 36.01 0.18 5.26 16 5 O -0.50 -6.60 15.51 -18.75 -0.29 -6.89 16 6 C -0.08 -0.83 3.32 -90.79 -0.30 -1.14 16 7 H 0.12 1.00 7.95 -51.93 -0.41 0.59 16 8 C 0.04 0.46 5.26 -1.98 -0.01 0.45 16 9 N -0.51 -6.45 5.07 -230.15 -1.17 -7.62 16 10 C 0.05 0.74 4.17 -3.83 -0.02 0.72 16 11 C 0.01 0.23 2.22 -93.40 -0.21 0.02 16 12 H 0.10 1.68 7.06 -51.93 -0.37 1.31 16 13 C 0.26 5.22 13.67 -20.76 -0.28 4.94 16 14 N -0.48 -10.63 18.54 42.15 0.78 -9.85 16 15 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 16 C -0.53 -13.93 8.60 -34.44 -0.30 -14.22 16 17 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 20 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.06 0.62 5.91 -2.58 -0.02 0.61 16 25 C -0.12 -1.13 1.19 -154.33 -0.18 -1.31 16 26 C 0.06 0.51 8.35 37.09 0.31 0.82 16 27 O -0.37 -4.12 12.46 -35.23 -0.44 -4.56 16 28 C 0.04 0.42 7.72 37.08 0.29 0.71 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 1.11 7.66 -51.93 -0.40 0.71 16 35 H 0.07 0.94 6.59 -51.93 -0.34 0.60 16 36 H 0.06 0.83 7.88 -51.93 -0.41 0.42 16 37 H 0.08 1.22 8.13 -51.92 -0.42 0.80 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.06 0.64 7.91 -51.93 -0.41 0.22 16 42 H 0.09 1.01 7.88 -51.93 -0.41 0.60 16 43 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 44 H 0.10 0.88 8.01 -51.93 -0.42 0.46 16 45 H 0.10 0.88 8.06 -51.93 -0.42 0.46 16 46 H 0.08 0.74 6.49 -51.93 -0.34 0.40 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -31.96 382.00 -7.43 -39.38 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -7.26 Total: -3.30 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -0.14 Total: -0.67 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.35 Total: -42.19 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -1.11 Total: -15.22 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.96 -7.43 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880004739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.076 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds