Wall clock time and date at job start Fri Apr 10 2020 14:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45197 * 109.47110 * 2 1 4 4 C 1.34227 * 116.99646 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00277 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99996 * 179.97438 * 4 3 2 7 7 H 1.09002 * 110.36364 * 26.64906 * 6 4 3 8 8 C 1.54662 * 110.41201 * 149.12504 * 6 4 3 9 9 N 1.48654 * 104.65690 * 142.46477 * 8 6 4 10 10 C 1.46896 * 110.99878 * 201.49659 * 9 8 6 11 11 C 1.53002 * 109.47380 * 290.12672 * 10 9 8 12 12 H 1.08995 * 109.47016 * 55.00033 * 11 10 9 13 13 C 1.47203 * 109.46942 * 294.99842 * 11 10 9 14 14 N 9.19248 * 131.01190 * 15.87537 * 2 1 3 15 15 C 1.53003 * 109.47153 * 174.99990 * 11 10 9 16 16 C 1.50699 * 109.47096 * 185.00038 * 15 11 10 17 17 H 1.08001 * 120.00209 * 359.97438 * 16 15 11 18 18 C 1.37876 * 119.99906 * 180.02562 * 16 15 11 19 19 N 1.31511 * 120.00081 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99845 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47078 * 89.99851 * 20 18 16 22 22 H 1.48498 * 109.47084 * 209.99781 * 20 18 16 23 23 H 1.48496 * 109.47186 * 329.99762 * 20 18 16 24 24 C 1.48822 * 104.42065 * 321.17107 * 9 8 6 25 25 C 1.53211 * 110.40994 * 264.30905 * 6 4 3 26 26 C 1.52905 * 115.83830 * 110.81036 * 25 6 4 27 27 O 1.44404 * 85.13685 * 220.62999 * 26 25 6 28 28 C 1.44410 * 93.54599 * 23.37014 * 27 26 25 29 29 H 1.09001 * 109.47483 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47258 * 300.00182 * 1 2 3 31 31 H 1.08998 * 109.47477 * 60.00031 * 1 2 3 32 32 H 1.09001 * 109.46734 * 239.99842 * 2 1 3 33 33 H 1.09004 * 109.46793 * 120.00499 * 2 1 3 34 34 H 1.09005 * 110.40037 * 261.25494 * 8 6 4 35 35 H 1.08994 * 110.39905 * 23.55436 * 8 6 4 36 36 H 1.09001 * 109.47185 * 50.12655 * 10 9 8 37 37 H 1.09008 * 109.47293 * 170.12779 * 10 9 8 38 38 H 1.09002 * 109.47111 * 304.99943 * 15 11 10 39 39 H 1.08997 * 109.47050 * 64.99904 * 15 11 10 40 40 H 0.97005 * 120.00186 * 179.97438 * 19 18 16 41 41 H 1.09004 * 110.46683 * 279.74858 * 24 9 8 42 42 H 1.08995 * 110.47036 * 157.15534 * 24 9 8 43 43 H 1.08998 * 113.92408 * 334.67828 * 26 25 6 44 44 H 1.09001 * 113.92243 * 106.58250 * 26 25 6 45 45 H 1.08995 * 113.91959 * 222.57542 * 28 27 26 46 46 H 1.08998 * 113.91877 * 90.67629 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9373 -0.0012 7 1 3.2220 3.6370 0.4572 8 6 5.2769 2.9603 0.7422 9 7 6.1150 3.9119 -0.0336 10 6 7.5439 3.6765 0.2125 11 6 7.8914 4.0974 1.6419 12 1 7.2382 3.5775 2.3426 13 6 7.7060 5.5508 1.7841 14 7 7.5623 6.6718 1.8974 15 6 9.3484 3.7376 1.9396 16 6 9.6552 4.0391 3.3839 17 1 8.8880 4.4470 4.0252 18 6 10.9158 3.7952 3.8862 19 7 11.8503 3.2989 3.1052 20 14 11.2964 4.1696 5.6763 21 1 11.0050 2.9724 6.5053 22 1 12.7307 4.5290 5.8128 23 1 10.4559 5.3051 6.1340 24 6 5.7665 3.6393 -1.4546 25 6 4.2561 3.3761 -1.4303 26 6 3.3787 4.4863 -2.0097 27 8 3.4259 3.7175 -3.2311 28 6 3.7190 2.4801 -2.5466 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.1442 3.3166 1.7638 35 1 5.7270 1.9677 0.7422 36 1 7.7654 2.6173 0.0817 37 1 8.1352 4.2611 -0.4923 38 1 9.5068 2.6762 1.7484 39 1 10.0059 4.3244 1.2982 40 1 12.7373 3.1276 3.4586 41 1 6.3008 2.7607 -1.8162 42 1 5.9924 4.5061 -2.0755 43 1 2.3865 4.5445 -1.5621 44 1 3.8766 5.4536 -2.0767 45 1 4.4834 1.8755 -3.0345 46 1 2.8336 1.9090 -2.2676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880004739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:41 Heat of formation + Delta-G solvation = -89.629473 kcal Electronic energy + Delta-G solvation = -27756.464722 eV Core-core repulsion = 23839.776414 eV Total energy + Delta-G solvation = -3916.688308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.74100 -41.04907 -39.40032 -37.92936 -37.33467 -35.60469 -34.30395 -32.85601 -32.04773 -30.45051 -28.66162 -27.75449 -25.91679 -25.83870 -23.91912 -23.59903 -22.69573 -21.84583 -20.10372 -18.95449 -18.53779 -18.23268 -17.96533 -17.71754 -17.01941 -16.98192 -16.62360 -16.34108 -15.92109 -15.63119 -15.11435 -14.89425 -14.83662 -14.56531 -14.39860 -14.14269 -13.79297 -13.71554 -13.64659 -13.29014 -13.15864 -13.02722 -12.96174 -12.87254 -12.74284 -12.52184 -12.48281 -12.43468 -12.31840 -12.01356 -11.80710 -11.60803 -11.54225 -11.39505 -11.35661 -11.16968 -10.70788 -10.55220 -9.55679 -8.19748 -6.28007 1.01050 1.40099 1.42067 1.50503 1.51387 2.07114 2.14335 2.41014 2.50326 2.84143 3.13377 3.15637 3.18623 3.33242 3.46082 3.77992 3.91503 4.01672 4.07145 4.07872 4.15891 4.23833 4.29823 4.33233 4.36632 4.50779 4.59230 4.66614 4.68499 4.78166 4.80668 4.83619 4.84806 4.90069 4.93572 4.95963 4.98730 5.06405 5.14932 5.41444 5.45928 5.58602 5.71147 5.77430 5.86383 6.19853 6.63389 6.83050 6.93537 7.40674 8.91239 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.002983 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.947643 B = 9383.852482 C =10329.251651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.357 6.357 4 C 0.476 3.524 5 O -0.526 6.526 6 C -0.078 4.078 7 H 0.137 0.863 8 C 0.037 3.963 9 N -0.513 5.513 10 C 0.061 3.939 11 C 0.024 3.976 12 H 0.114 0.886 13 C 0.266 3.734 14 N -0.509 5.509 15 C 0.037 3.963 16 C -0.538 4.538 17 H 0.055 0.945 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.949 3.051 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.058 3.942 25 C -0.114 4.114 26 C 0.059 3.941 27 O -0.394 6.394 28 C 0.046 3.954 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.032 0.968 39 H 0.003 0.997 40 H 0.264 0.736 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.593 -7.194 -10.532 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.273 6.273 4 C 0.320 3.680 5 O -0.415 6.415 6 C -0.098 4.098 7 H 0.154 0.846 8 C -0.091 4.091 9 N -0.237 5.237 10 C -0.068 4.068 11 C 0.002 3.998 12 H 0.132 0.868 13 C -0.050 4.050 14 N -0.186 5.186 15 C -0.001 4.001 16 C -0.576 4.576 17 H 0.073 0.927 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.774 3.226 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.070 4.070 25 C -0.115 4.115 26 C -0.017 4.017 27 O -0.313 6.313 28 C -0.031 4.031 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.051 0.949 39 H 0.022 0.978 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.574 -5.246 -10.486 26.329 hybrid contribution 1.135 -1.355 1.008 2.035 sum -22.440 -6.600 -9.478 25.237 Atomic orbital electron populations 1.21828 0.90462 1.04341 1.03775 1.23323 0.97059 0.79098 1.02720 1.86537 1.23547 1.33832 1.83428 1.23508 0.80913 0.92242 0.71377 1.90687 1.61000 1.43708 1.46070 1.21751 0.98558 0.91235 0.98267 0.84558 1.23277 0.90758 0.96343 0.98698 1.65533 1.04720 1.48162 1.05268 1.22264 0.88538 1.01234 0.94787 1.19088 1.00524 0.81759 0.98388 0.86831 1.29209 0.90021 0.95168 0.90591 1.80981 1.12173 1.14192 1.11261 1.18994 0.88551 0.97189 0.95406 1.21539 0.96813 1.42401 0.96889 0.92722 1.25715 0.96419 0.95044 1.01605 1.70032 1.03820 1.45305 1.37205 0.85690 0.77232 0.78780 0.80865 1.19240 1.21020 1.19952 1.22835 0.91762 1.02005 0.90377 1.23677 0.97613 0.97836 0.92356 1.24135 0.99550 0.95867 0.82137 1.89747 1.93570 1.20107 1.27900 1.24052 0.99624 0.88891 0.90516 0.88349 0.91289 0.91143 0.91062 0.91366 0.88456 0.91921 0.91176 0.89638 0.94927 0.97821 0.92716 0.92005 0.88359 0.87629 0.87561 0.88320 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 71.98 0.74 -0.46 16 2 C 0.05 0.70 6.19 71.98 0.45 1.15 16 3 O -0.36 -6.15 9.80 -51.39 -0.50 -6.66 16 4 C 0.48 9.59 5.10 71.24 0.36 9.96 16 5 O -0.53 -13.56 15.51 21.96 0.34 -13.22 16 6 C -0.08 -1.41 3.32 -10.90 -0.04 -1.45 16 7 H 0.14 1.96 7.95 -2.39 -0.02 1.94 16 8 C 0.04 0.82 5.26 86.53 0.46 1.27 16 9 N -0.51 -12.32 5.07 -882.05 -4.47 -16.79 16 10 C 0.06 1.70 4.17 86.30 0.36 2.06 16 11 C 0.02 0.86 2.22 -12.60 -0.03 0.83 16 12 H 0.11 3.73 7.06 -2.39 -0.02 3.71 16 13 C 0.27 10.73 13.67 89.44 1.22 11.95 16 14 N -0.51 -22.37 18.54 20.00 0.37 -22.00 16 15 C 0.04 1.72 4.42 29.85 0.13 1.85 16 16 C -0.54 -28.45 8.60 25.60 0.22 -28.23 16 17 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 18 C 0.01 0.61 5.46 84.65 0.46 1.07 16 19 N -0.92 -53.14 13.29 21.45 0.28 -52.86 16 20 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 24 C 0.06 1.16 5.91 86.04 0.51 1.67 16 25 C -0.11 -2.00 1.19 -52.07 -0.06 -2.06 16 26 C 0.06 0.93 8.35 71.94 0.60 1.53 16 27 O -0.39 -7.98 12.46 -148.98 -1.86 -9.84 16 28 C 0.05 0.81 7.72 71.93 0.56 1.37 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.10 2.11 7.66 -2.38 -0.02 2.09 16 35 H 0.06 1.55 6.59 -2.39 -0.02 1.53 16 36 H 0.07 1.84 7.88 -2.39 -0.02 1.83 16 37 H 0.09 2.39 8.13 -2.38 -0.02 2.37 16 38 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 41 H 0.06 1.23 7.91 -2.39 -0.02 1.21 16 42 H 0.10 1.93 7.88 -2.39 -0.02 1.91 16 43 H 0.11 1.27 8.12 -2.39 -0.02 1.25 16 44 H 0.11 1.60 8.01 -2.39 -0.02 1.58 16 45 H 0.10 1.68 8.06 -2.39 -0.02 1.66 16 46 H 0.09 1.41 6.49 -2.39 -0.02 1.40 16 Total: -1.00 -67.41 382.00 3.10 -64.30 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.97 Total: 9.11 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.94 Total: 2.50 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -3.82 Total: -91.65 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -2.02 Total: -29.72 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -67.41 3.10 -64.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880004739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.327 kcal (2) G-P(sol) polarization free energy of solvation -67.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds